Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023206 Daucus carota HOM05D004946 ORTHO05D006101 3.7e-180 634.8 332 100.0
Dinv15680 Davidia involucrata HOM05D004946 ORTHO05D006101 5.9e-77 292.0 340 56.5
Hma1.2p1_0701F.1_g205890 Hydrangea macrophylla HOM05D004946 ORTHO05D006101 1.0e-76 291.2 340 56.5
Hma1.2p1_2409F.1_g321510 Hydrangea macrophylla HOM05D004946 ORTHO05D006101 2.3e-73 280.0 340 55.6
Actinidia18931 Actinidia chinensis HOM05D004946 ORTHO05D006101 3.4e-64 249.6 341 51.9
Dinv28107 Davidia involucrata HOM05D004946 ORTHO05D006101 1.3e-63 247.7 339 51.6
Cfa019764 Carpinus fangiana HOM05D004946 ORTHO05D006101 4.9e-63 245.7 342 50.0
Haze_18683 Corylus avellana HOM05D004946 ORTHO05D006101 4.9e-63 245.7 341 49.9
Atru.chr9.855 Acer truncatum HOM05D004946 ORTHO05D006101 1.4e-62 244.2 341 51.9
COL.COLO4_11303 Corchorus olitorius HOM05D004946 ORTHO05D006101 7.0e-62 241.9 340 50.9
Prupe.5G221700 Prunus persica HOM05D004946 ORTHO05D006101 1.6e-61 240.7 340 50.9
Thecc.03G035700 Theobroma cacao HOM05D004946 ORTHO05D006101 4.0e-57 226.1 338 48.8
QL10p025417 Quercus lobata HOM05D004946 ORTHO05D006101 6.8e-57 225.3 336 47.6
Potri.012G056200 Populus trichocarpa HOM05D004946 ORTHO05D006101 2.0e-56 223.8 342 48.2
MSTRG.11071 Avicennia marina HOM05D004946 ORTHO05D006101 3.4e-56 223.0 340 48.8
Cc04_g07080 Coffea canephora HOM05D004946 ORTHO05D006101 1.3e-55 221.1 337 47.2
Duzib084G0074 Durio zibethinus HOM05D004946 ORTHO05D006101 2.9e-55 219.9 341 48.7
Oeu064714.1 Olea europaea HOM05D004946 ORTHO05D006101 8.3e-55 218.4 342 48.2
CSS0004173 Camellia sinensis var. sinensis HOM05D004946 ORTHO05D006101 3.5e-53 213.0 342 48.2
MD14G1227000 Malus domestica HOM05D004946 ORTHO05D006101 1.0e-52 211.5 341 49.6
Gohir.D09G049200 Gossypium hirsutum HOM05D004946 ORTHO05D006101 3.9e-52 209.5 339 47.8
Gorai.006G060600 Gossypium raimondii HOM05D004946 ORTHO05D006101 8.6e-52 208.4 339 47.5
Rhsim12G0143100 Rhododendron simsii HOM05D004946 ORTHO05D006101 1.5e-51 207.6 345 46.1
Ciclev10020493m.g Citrus clementina HOM05D004946 ORTHO05D006101 4.3e-51 206.1 340 46.5
PGSC0003DMG401005635 Solanum tuberosum HOM05D004946 ORTHO05D006101 4.3e-51 206.1 337 47.2
Gohir.D08G105600 Gossypium hirsutum HOM05D004946 ORTHO05D006101 1.2e-50 204.5 334 47.9
Eucgr.K02226 Eucalyptus grandis HOM05D004946 ORTHO05D006101 1.6e-50 204.1 356 45.8
FAN18G2620 Fragaria x ananassa HOM05D004946 ORTHO05D006101 1.4e-49 201.1 340 49.1
ECA238G2506 Erigeron canadensis HOM05D004946 ORTHO05D006101 2.3e-49 200.3 338 44.7
Sopen03g038310 Solanum pennellii HOM05D004946 ORTHO05D006101 2.3e-49 200.3 337 46.6
FvH4_5g12080 Fragaria vesca HOM05D004946 ORTHO05D006101 4.0e-49 199.5 340 48.8
Lalb_Chr09g0331081 Lupinus albus HOM05D004946 ORTHO05D006101 4.0e-49 199.5 339 47.2
arahy.Tifrunner.gnm1.ann1.94ZJ0E Arachis hypogaea HOM05D004946 ORTHO05D006101 8.9e-49 198.4 340 46.5
arahy.Tifrunner.gnm1.ann1.G56NCJ Arachis hypogaea HOM05D004946 ORTHO05D006101 1.2e-48 198.0 340 45.3
FAN08G1246 Fragaria x ananassa HOM05D004946 ORTHO05D006101 1.2e-48 198.0 340 48.8
Gohir.A09G048000 Gossypium hirsutum HOM05D004946 ORTHO05D006101 1.2e-48 198.0 339 46.3
FAN18G3139 Fragaria x ananassa HOM05D004946 ORTHO05D006101 7.5e-48 195.3 340 48.2
Nn3g17855 Nelumbo nucifera HOM05D004946 ORTHO05D006101 2.9e-47 193.4 337 44.2
Lalb_Chr05g0222491 Lupinus albus HOM05D004946 ORTHO05D006101 4.9e-47 192.6 339 45.1
vmacro16446 Vaccinium macrocarpon HOM05D004946 ORTHO05D006101 8.3e-47 191.8 345 43.2
Gohir.A08G095000 Gossypium hirsutum HOM05D004946 ORTHO05D006101 1.4e-46 191.0 307 47.2
TWI15G0834 Tripterygium wilfordii HOM05D004946 ORTHO05D006101 1.9e-46 190.7 347 45.2
arahy.Tifrunner.gnm1.ann1.N3S6I2 Arachis hypogaea HOM05D004946 ORTHO05D006101 5.4e-46 189.1 340 44.7
Sabra12G0039900 Salix brachista HOM05D004946 ORTHO05D006101 9.2e-46 188.3 380 41.6
VMungo0720G2584 Vigna mungo HOM05D004946 ORTHO05D006101 2.1e-45 187.2 340 45.9
Oeu056801.1 Olea europaea HOM05D004946 ORTHO05D006101 2.7e-45 186.8 328 46.6
Peaxi162Scf00634g00318 Petunia axillaris HOM05D004946 ORTHO05D006101 2.7e-45 186.8 314 44.3
CAN.G1889.4 Capsicum annuum HOM05D004946 ORTHO05D006101 1.7e-44 184.1 337 44.2
AUR62008463 Chenopodium quinoa HOM05D004946 ORTHO05D006101 1.7e-44 184.1 334 43.7
arahy.Tifrunner.gnm1.ann1.X2WJJP Arachis hypogaea HOM05D004946 ORTHO05D006101 2.3e-44 183.7 337 43.9
CANSAT80G1182 Cannabis sativa HOM05D004946 ORTHO05D006101 5.0e-44 182.6 344 43.0
FAN04G0770 Fragaria x ananassa HOM05D004946 ORTHO05D006101 1.1e-43 181.4 338 47.0
AUR62021632 Chenopodium quinoa HOM05D004946 ORTHO05D006101 1.5e-43 181.0 334 43.7
AUR62038115 Chenopodium quinoa HOM05D004946 ORTHO05D006101 1.5e-43 181.0 341 44.6
Glyma.10G040800 Glycine max HOM05D004946 ORTHO05D006101 1.5e-43 181.0 336 45.8
Gorai.004G113500 Gossypium raimondii HOM05D004946 ORTHO05D006101 1.9e-43 180.6 335 43.3
RcHm_v2.0_Chr7g0185491 Rosa chinensis HOM05D004946 ORTHO05D006101 1.9e-43 180.6 340 46.5
CiPaw.16G086800 Carya illinoinensis HOM05D004946 ORTHO05D006101 9.5e-43 178.3 341 42.8
Manes.01G011100 Manihot esculenta HOM05D004946 ORTHO05D006101 2.8e-42 176.8 337 43.3
PGR044G1576 Punica granatum HOM05D004946 ORTHO05D006101 6.2e-42 175.6 345 44.1
TAR629G2125 Trochodendron aralioides HOM05D004946 ORTHO05D006101 6.2e-42 175.6 322 45.0
Aqoxy3G00287 Aquilegia oxysepala HOM05D004946 ORTHO05D006101 1.4e-41 174.5 337 42.1
Actinidia35090 Actinidia chinensis HOM05D004946 ORTHO05D006101 1.8e-41 174.1 277 46.6
Solyc03g119460.4 Solanum lycopersicum HOM05D004946 ORTHO05D006101 5.2e-41 172.6 239 50.6
Nitab4.5_0009306g0010 Nicotiana tabacum HOM05D004946 ORTHO05D006101 8.9e-41 171.8 324 44.1
CsaV3_1G006630 Cucumis sativus L. HOM05D004946 ORTHO05D006101 1.2e-40 171.4 344 43.3
Psat7g010600 Pisum sativum HOM05D004946 ORTHO05D006101 1.5e-40 171.0 339 40.4
MELO3C002087.2 Cucumis melo HOM05D004946 ORTHO05D006101 2.6e-40 170.2 344 43.3
Nitab4.5_0000974g0090 Nicotiana tabacum HOM05D004946 ORTHO05D006101 3.4e-40 169.9 336 42.9
Sc12g0007670 Simmondsia chinensis HOM05D004946 ORTHO05D006101 9.9e-40 168.3 348 42.5
Ca_25442_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 1.7e-39 167.5 302 45.7
Medtr8g104260 Medicago truncatula HOM05D004946 ORTHO05D006101 1.7e-39 167.5 339 41.9
FAN13G1851 Fragaria x ananassa HOM05D004946 ORTHO05D006101 2.2e-39 167.2 338 45.6
Nitab4.5_0000208g0330 Nicotiana tabacum HOM05D004946 ORTHO05D006101 8.3e-39 165.2 337 41.2
Phvul.007G154000 Phaseolus vulgaris HOM05D004946 ORTHO05D006101 3.2e-38 163.3 302 45.7
Nn4g23854 Nelumbo nucifera HOM05D004946 ORTHO05D006101 4.1e-38 162.9 338 41.1
Nitab4.5_0012710g0020 Nicotiana tabacum HOM05D004946 ORTHO05D006101 5.4e-38 162.5 337 40.9
Glyma.08G041600 Glycine max HOM05D004946 ORTHO05D006101 4.6e-37 159.5 340 42.1
GSVIVG01008294001 Vitis vinifera HOM05D004946 ORTHO05D006101 1.3e-36 157.9 320 42.2
Migut.I00881 Erythranthe guttata HOM05D004946 ORTHO05D006101 3.9e-36 156.4 362 40.3
Lj4g0022250 Lotus japonicus HOM05D004946 ORTHO05D006101 8.6e-36 155.2 340 41.8
HanXRQChr06g0184711 Helianthus annuus HOM05D004946 ORTHO05D006101 1.9e-35 154.1 341 40.2
Gohir.D11G132850 Gossypium hirsutum HOM05D004946 ORTHO05D006101 1.6e-34 151.0 186 55.9
Gohir.D05G109701 Gossypium hirsutum HOM05D004946 ORTHO05D006101 4.7e-34 149.4 186 55.4
unitig_8.g3895 Utricularia gibba HOM05D004946 ORTHO05D006101 6.2e-34 149.1 299 42.8
TPR.G32702 Trifolium pratense HOM05D004946 ORTHO05D006101 1.4e-33 147.9 338 39.3
PSO478G0599 Papaver somniferum HOM05D004946 ORTHO05D006101 4.0e-33 146.4 344 41.3
CDE02G4219 Ceratophyllum demersum HOM05D004946 ORTHO05D006101 8.9e-33 145.2 344 41.3
Peaxi162Scf00015g01034 Petunia axillaris HOM05D004946 ORTHO05D006101 8.9e-33 145.2 307 40.1
Aa31LG4G4160 Aethionema arabicum HOM05D004946 ORTHO05D006101 1.2e-32 144.8 377 39.5
CARHR066930 Cardamine hirsuta HOM05D004946 ORTHO05D006101 2.6e-32 143.7 340 40.9
GSVIVG01008293001 Vitis vinifera HOM05D004946 ORTHO05D006101 2.6e-32 143.7 322 41.0
BcaC08g45619 Brassica carinata HOM05D004946 ORTHO05D006101 3.4e-32 143.3 343 41.7
HPP92_004811 Vanilla planifolia HOM05D004946 ORTHO05D006101 3.4e-32 143.3 341 41.1
Glyma.05G234300 Glycine max HOM05D004946 ORTHO05D006101 9.9e-32 141.7 337 40.9
A07p29630 Brassica napus HOM05D004946 ORTHO05D006101 1.7e-31 141.0 340 41.2
BcaB03g15098 Brassica carinata HOM05D004946 ORTHO05D006101 2.9e-31 140.2 345 39.4
Carub.0002s2060 Capsella rubella HOM05D004946 ORTHO05D006101 3.8e-31 139.8 346 39.6
BcaB03g15093 Brassica carinata HOM05D004946 ORTHO05D006101 1.1e-30 138.3 340 40.3
C06p47990 Brassica napus HOM05D004946 ORTHO05D006101 1.1e-30 138.3 340 40.3
PSO017G0469 Papaver somniferum HOM05D004946 ORTHO05D006101 3.2e-30 136.7 342 41.2
Sp5g29040 Schrenkiella parvula HOM05D004946 ORTHO05D006101 5.4e-30 136.0 346 40.8
AL2G33660 Arabidopsis lyrata HOM05D004946 ORTHO05D006101 2.7e-29 133.7 360 37.8
C06p33810 Brassica napus HOM05D004946 ORTHO05D006101 3.5e-29 133.3 340 40.6
AT1G73840 Arabidopsis thaliana HOM05D004946 ORTHO05D006101 4.6e-29 132.9 346 39.3
BcaB03g15090 Brassica carinata HOM05D004946 ORTHO05D006101 6.0e-29 132.5 336 38.4
Lsat_1_v5_gn_2_12261 Lactuca sativa HOM05D004946 ORTHO05D006101 1.3e-28 131.3 195 48.2
Cpa.g.sc3.508 Carica papaya HOM05D004946 ORTHO05D006101 3.9e-28 129.8 203 47.8
BolC6t38494H Brassica oleracea HOM05D004946 ORTHO05D006101 5.1e-28 129.4 340 40.3
Gohir.D08G202000 Gossypium hirsutum HOM05D004946 ORTHO05D006101 8.7e-28 128.6 159 56.0
BcaB03g15731 Brassica carinata HOM05D004946 ORTHO05D006101 7.3e-27 125.6 364 39.0
BraA07t31519Z Brassica rapa HOM05D004946 ORTHO05D006101 2.1e-26 124.0 343 39.1
ClCG04G011130 Citrullus lanatus HOM05D004946 ORTHO05D006101 2.1e-26 124.0 329 38.9
DCAR_015143 Daucus carota HOM05D004946 ORTHO05D006101 2.6e-24 117.1 335 35.5
ATR1125G052 Amborella trichopoda HOM05D004946 ORTHO05D006101 4.4e-24 116.3 335 38.5
SGA_v2.0_scaffold5G02571 Striga asiatica HOM05D004946 ORTHO05D006101 4.4e-24 116.3 342 36.8
A07p39700 Brassica napus HOM05D004946 ORTHO05D006101 5.8e-24 115.9 343 37.9
BraA07t30604Z Brassica rapa HOM05D004946 ORTHO05D006101 9.9e-24 115.2 364 36.8
Ca_15108_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 1.7e-23 114.4 157 49.0
BcaNung06927 Brassica carinata HOM05D004946 ORTHO05D006101 2.9e-23 113.6 180 50.0
THA.LOC104812144 Tarenaya hassleriana HOM05D004946 ORTHO05D006101 2.9e-23 113.6 338 37.3
Thhalv10018702m.g Eutrema salsugineum HOM05D004946 ORTHO05D006101 3.2e-22 110.2 351 35.6
HPP92_004808 Vanilla planifolia HOM05D004946 ORTHO05D006101 2.7e-21 107.1 318 38.1
Ah.11g048200 Amaranthus hybridus HOM05D004946 ORTHO05D006101 3.5e-21 106.7 326 35.0
Gohir.A11G277050 Gossypium hirsutum HOM05D004946 ORTHO05D006101 1.8e-17 94.4 86 64.0
Sed0008793 Sechium edule HOM05D004946 ORTHO05D006101 2.4e-17 94.0 250 36.8
Glyma.13G127700 Glycine max HOM05D004946 ORTHO05D006101 4.5e-16 89.7 103 57.3
Zm00001eb292700 Zea mays HOM05D004946 ORTHO05D006101 4.9e-15 86.3 314 33.4
EL10Ac5g11063 Beta vulgaris HOM05D004946 ORTHO05D006101 4.6e-13 79.7 205 37.1
CDE06G2845 Ceratophyllum demersum HOM05D004946 ORTHO05D006101 7.9e-13 79.0 91 56.0
BcaB03g15096 Brassica carinata HOM05D004946 ORTHO05D006101 1.1e-11 75.1 290 34.1
Lsat_1_v5_gn_8_63781 Lactuca sativa HOM05D003883 ORTHO05D004605 9.9e-08 62.0 79 48.1
CAN.G1166.27 Capsicum annuum HOM05D004266 ORTHO05D005151 3.8e-07 60.1 41 75.6
Peaxi162Scf00089g01727 Petunia axillaris HOM05D004266 ORTHO05D005151 1.4e-06 58.2 89 42.7
Lsat_1_v5_gn_9_93500 Lactuca sativa HOM05D001433 ORTHO05D013129 4.2e-06 56.6 35 82.9
Ca_25456_v3 Cicer arietinum L. HOM05D004946 ORTHO05D006101 7.1e-06 55.8 247 31.6


User provided reference genes

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