Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023195 Daucus carota HOM05D005957 ORTHO05D007318 4.2e-113 411.4 210 100.0
Psat2g052120 Pisum sativum HOM05D005957 ORTHO05D007318 5.0e-29 132.1 81 75.3
ClCG02G019100 Citrullus lanatus HOM05D005957 ORTHO05D007318 2.1e-27 126.7 76 73.7
MELO3C026874.2 Cucumis melo HOM05D005957 ORTHO05D007318 4.6e-27 125.6 77 71.4
CsaV3_6G019090 Cucumis sativus L. HOM05D005957 ORTHO05D007318 6.1e-27 125.2 72 73.6
Glyma.02G235500 Glycine max HOM05D005957 ORTHO05D007318 6.1e-27 125.2 80 76.2
Duzib168G0649 Durio zibethinus HOM05D005957 ORTHO05D007318 1.0e-26 124.4 204 39.2
Medtr5g075190 Medicago truncatula HOM05D005957 ORTHO05D007318 1.0e-26 124.4 79 72.2
Glyma.14G203500 Glycine max HOM05D005957 ORTHO05D007318 1.8e-26 123.6 62 87.1
Ca_05700_v3 Cicer arietinum L. HOM05D005957 ORTHO05D007318 3.0e-26 122.9 82 69.5
Ca_30026_v3 Cicer arietinum L. HOM05D005957 ORTHO05D007318 3.0e-26 122.9 82 69.5
LjContig00141g0008224 Lotus japonicus HOM05D005957 ORTHO05D007318 3.0e-26 122.9 65 81.5
Cpa.g.sc2.317 Carica papaya HOM05D005957 ORTHO05D007318 3.9e-26 122.5 64 82.8
VMungo0647G0754 Vigna mungo HOM05D005957 ORTHO05D007318 3.9e-26 122.5 62 85.5
Sed0019639 Sechium edule HOM05D005957 ORTHO05D007318 6.7e-26 121.7 73 72.6
TPR.G25771 Trifolium pratense HOM05D005957 ORTHO05D007318 1.1e-25 120.9 75 76.0
GSVIVG01024580001 Vitis vinifera HOM05D005957 ORTHO05D007318 1.5e-25 120.6 209 39.7
COL.COLO4_11196 Corchorus olitorius HOM05D005957 ORTHO05D007318 3.3e-25 119.4 203 38.9
Phvul.008G248400 Phaseolus vulgaris HOM05D005957 ORTHO05D007318 3.3e-25 119.4 62 82.3
Haze_24453 Corylus avellana HOM05D005957 ORTHO05D007318 4.3e-25 119.0 205 40.5
Gohir.D05G134050 Gossypium hirsutum HOM05D005957 ORTHO05D007318 7.4e-25 118.2 127 49.6
Thecc.09G362300 Theobroma cacao HOM05D005957 ORTHO05D007318 7.4e-25 118.2 126 50.0
Atru.chr1.2524 Acer truncatum HOM05D005957 ORTHO05D007318 9.7e-25 117.9 205 38.5
Cfa011817 Carpinus fangiana HOM05D005957 ORTHO05D007318 1.3e-24 117.5 205 40.0
Lalb_Chr17g0345591 Lupinus albus HOM05D005957 ORTHO05D007318 2.2e-24 116.7 65 76.9
Solyc06g082450.1 Solanum lycopersicum HOM05D005957 ORTHO05D007318 2.2e-24 116.7 207 42.5
CANSAT54G0691 Cannabis sativa HOM05D005957 ORTHO05D007318 3.7e-24 115.9 78 65.4
MD11G1055300 Malus domestica HOM05D005957 ORTHO05D007318 3.7e-24 115.9 202 37.6
FAN21G1009 Fragaria x ananassa HOM05D005957 ORTHO05D007318 4.8e-24 115.5 208 39.9
Gohir.A05G129400 Gossypium hirsutum HOM05D005957 ORTHO05D007318 4.8e-24 115.5 203 39.9
Gorai.009G137600 Gossypium raimondii HOM05D005957 ORTHO05D007318 4.8e-24 115.5 203 40.4
Hma1.2p1_0119F.1_g056870 Hydrangea macrophylla HOM05D005957 ORTHO05D007318 6.3e-24 115.2 203 40.9
TWI79G1455 Tripterygium wilfordii HOM05D005957 ORTHO05D007318 6.3e-24 115.2 63 79.4
FAN11G2330 Fragaria x ananassa HOM05D005957 ORTHO05D007318 1.1e-23 114.4 167 43.1
FAN16G3236 Fragaria x ananassa HOM05D005957 ORTHO05D007318 1.1e-23 114.4 166 43.4
FvH4_3g40300 Fragaria vesca HOM05D005957 ORTHO05D007318 1.4e-23 114.0 205 40.5
Sopen06g033830 Solanum pennellii HOM05D005957 ORTHO05D007318 1.8e-23 113.6 62 79.0
Oeu064677.1 Olea europaea HOM05D005957 ORTHO05D007318 2.4e-23 113.2 215 37.7
Potri.019G128400 Populus trichocarpa HOM05D005957 ORTHO05D007318 2.4e-23 113.2 203 39.4
RcHm_v2.0_Chr5g0072641 Rosa chinensis HOM05D005957 ORTHO05D007318 2.4e-23 113.2 208 41.3
CSS0038993 Camellia sinensis var. sinensis HOM05D005957 ORTHO05D007318 3.1e-23 112.8 64 71.9
Dinv04837 Davidia involucrata HOM05D005957 ORTHO05D007318 3.1e-23 112.8 62 77.4
TAR623G0423 Trochodendron aralioides HOM05D005957 ORTHO05D007318 3.1e-23 112.8 79 70.9
MBI03_g02190_MAGBIO Magnolia biondii HOM05D005957 ORTHO05D007318 4.1e-23 112.5 73 69.9
Prupe.6G042800 Prunus persica HOM05D005957 ORTHO05D007318 4.1e-23 112.5 207 37.2
PGR119G2032 Punica granatum HOM05D005957 ORTHO05D007318 5.3e-23 112.1 60 76.7
QL01p025125 Quercus lobata HOM05D005957 ORTHO05D007318 5.3e-23 112.1 205 37.6
ECA236G1285 Erigeron canadensis HOM05D005957 ORTHO05D007318 9.0e-23 111.3 126 46.8
Nitab4.5_0002759g0020 Nicotiana tabacum HOM05D005957 ORTHO05D007318 9.0e-23 111.3 203 38.4
FAN25G1085 Fragaria x ananassa HOM05D005957 ORTHO05D007318 1.2e-22 110.9 167 42.5
Lsat_1_v5_gn_0_40840 Lactuca sativa HOM05D005957 ORTHO05D007318 1.2e-22 110.9 126 48.4
CiPaw.13G065100 Carya illinoinensis HOM05D005957 ORTHO05D007318 2.6e-22 109.8 204 38.2
Eucgr.J01842 Eucalyptus grandis HOM05D005957 ORTHO05D007318 2.6e-22 109.8 62 75.8
Sabra19G0126000 Salix brachista HOM05D005957 ORTHO05D007318 2.6e-22 109.8 203 36.5
PGSC0003DMG400046061 Solanum tuberosum HOM05D005957 ORTHO05D007318 2.6e-22 109.8 162 42.6
Nitab4.5_0000002g0080 Nicotiana tabacum HOM05D005957 ORTHO05D007318 3.4e-22 109.4 204 37.7
MSTRG.17909 Avicennia marina HOM05D005957 ORTHO05D007318 4.5e-22 109.0 61 73.8
Peaxi162Scf01692g00003 Petunia axillaris HOM05D005957 ORTHO05D007318 4.5e-22 109.0 171 40.4
Aqoxy2G00718 Aquilegia oxysepala HOM05D005957 ORTHO05D007318 5.9e-22 108.6 70 71.4
Cc01_g15210 Coffea canephora HOM05D005957 ORTHO05D007318 5.9e-22 108.6 64 68.8
Nitab4.5_0002091g0020 Nicotiana tabacum HOM05D005957 ORTHO05D007318 5.9e-22 108.6 203 36.9
Potri.013G155300 Populus trichocarpa HOM05D005957 ORTHO05D007318 5.9e-22 108.6 202 38.6
Sabra13G0125100 Salix brachista HOM05D005957 ORTHO05D007318 7.7e-22 108.2 62 71.0
PSO170G5428 Papaver somniferum HOM05D005957 ORTHO05D007318 1.0e-21 107.8 74 64.9
THA.LOC104800785 Tarenaya hassleriana HOM05D005957 ORTHO05D007318 1.0e-21 107.8 60 73.3
Rhsim13G0060900 Rhododendron simsii HOM05D005957 ORTHO05D007318 1.3e-21 107.5 126 46.8
PSO017G7297 Papaver somniferum HOM05D005957 ORTHO05D007318 1.7e-21 107.1 74 64.9
EL10Ac7g16454 Beta vulgaris HOM05D005957 ORTHO05D007318 2.2e-21 106.7 62 71.0
Carub.0004s1155 Capsella rubella HOM05D005957 ORTHO05D007318 2.2e-21 106.7 63 73.0
CARHR123750 Cardamine hirsuta HOM05D005957 ORTHO05D007318 2.2e-21 106.7 63 73.0
MD03G1053700 Malus domestica HOM05D005957 ORTHO05D007318 2.2e-21 106.7 203 37.9
Nitab4.5_0007927g0010 Nicotiana tabacum HOM05D005957 ORTHO05D007318 2.9e-21 106.3 204 37.7
CAN.G1872.4 Capsicum annuum HOM05D005957 ORTHO05D007318 5.0e-21 105.5 63 69.8
Manes.18G139500 Manihot esculenta HOM05D005957 ORTHO05D007318 5.0e-21 105.5 200 38.0
Nn5g26879 Nelumbo nucifera HOM05D005957 ORTHO05D007318 5.0e-21 105.5 67 68.7
Peaxi162Scf00390g00049 Petunia axillaris HOM05D005957 ORTHO05D007318 5.0e-21 105.5 200 40.0
AL4G25260 Arabidopsis lyrata HOM05D005957 ORTHO05D007318 6.5e-21 105.1 63 71.4
AT2G30395 Arabidopsis thaliana HOM05D005957 ORTHO05D007318 6.5e-21 105.1 63 71.4
Aa31LG5G6330 Aethionema arabicum HOM05D005957 ORTHO05D007318 1.1e-20 104.4 63 71.4
Phvul.006G076900 Phaseolus vulgaris HOM05D005957 ORTHO05D007318 1.1e-20 104.4 65 67.7
BcaC02g11133 Brassica carinata HOM05D005957 ORTHO05D007318 1.4e-20 104.0 63 71.4
Thhalv10017867m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 1.9e-20 103.6 63 69.8
A05p15090 Brassica napus HOM05D005957 ORTHO05D007318 3.2e-20 102.8 63 69.8
BolC4t23551H Brassica oleracea HOM05D005957 ORTHO05D007318 3.2e-20 102.8 63 69.8
CiPaw.14G051700 Carya illinoinensis HOM05D005957 ORTHO05D007318 3.2e-20 102.8 209 37.3
Sp4g12950 Schrenkiella parvula HOM05D005957 ORTHO05D007318 3.2e-20 102.8 63 68.3
C04p20120 Brassica napus HOM05D005957 ORTHO05D007318 4.2e-20 102.4 63 69.8
HanXRQChr01g0028631 Helianthus annuus HOM05D005957 ORTHO05D007318 4.2e-20 102.4 61 70.5
SGA_v2.0_scaffold77G25368 Striga asiatica HOM05D005957 ORTHO05D007318 5.5e-20 102.1 204 36.8
BcaB02g10322 Brassica carinata HOM05D005957 ORTHO05D007318 7.2e-20 101.7 73 63.0
Ah.08g217120 Amaranthus hybridus HOM05D005957 ORTHO05D007318 9.4e-20 101.3 207 37.7
ATR0681G143 Amborella trichopoda HOM05D005957 ORTHO05D007318 9.4e-20 101.3 59 71.2
HanXRQChr17g0565391 Helianthus annuus HOM05D005957 ORTHO05D007318 9.4e-20 101.3 170 37.1
Solyc01g090870.1 Solanum lycopersicum HOM05D005957 ORTHO05D007318 9.4e-20 101.3 206 36.9
Sopen01g036610 Solanum pennellii HOM05D005957 ORTHO05D007318 1.2e-19 100.9 204 36.3
SalBow6G3501 Salvia bowleyana HOM05D005957 ORTHO05D007318 1.6e-19 100.5 126 45.2
vmacro02888 Vaccinium macrocarpon HOM05D005957 ORTHO05D007318 1.6e-19 100.5 64 67.2
BcaB06g28364 Brassica carinata HOM05D005957 ORTHO05D007318 2.1e-19 100.1 63 66.7
BraA05t20430Z Brassica rapa HOM05D005957 ORTHO05D007318 2.1e-19 100.1 63 69.8
Ciclev10003853m.g Citrus clementina HOM05D005957 ORTHO05D007318 2.1e-19 100.1 201 37.8
Thhalv10009633m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 3.6e-19 99.4 62 71.0
Carub.0001s0622 Capsella rubella HOM05D005957 ORTHO05D007318 4.6e-19 99.0 62 67.7
BraA04t17844Z Brassica rapa HOM05D005957 ORTHO05D007318 6.1e-19 98.6 63 68.3
A04p23170 Brassica napus HOM05D005957 ORTHO05D007318 1.0e-18 97.8 63 68.3
Thhalv10017852m.g Eutrema salsugineum HOM05D005957 ORTHO05D007318 1.4e-18 97.4 63 68.3
Os07g0679100 Oryza sativa ssp. japonica HOM05D005957 ORTHO05D007318 2.3e-18 96.7 60 70.0
Sp1g05630 Schrenkiella parvula HOM05D005957 ORTHO05D007318 2.3e-18 96.7 62 66.1
Oeu011373.1 Olea europaea HOM05D005957 ORTHO05D007318 3.0e-18 96.3 125 45.6
AL1G16950 Arabidopsis lyrata HOM05D005957 ORTHO05D007318 3.9e-18 95.9 62 66.1
AT1G06923 Arabidopsis thaliana HOM05D005957 ORTHO05D007318 3.9e-18 95.9 62 66.1
CARHR006600 Cardamine hirsuta HOM05D005957 ORTHO05D007318 6.7e-18 95.1 62 67.7
Sc21g0004870 Simmondsia chinensis HOM05D005957 ORTHO05D007318 6.7e-18 95.1 60 66.7
BcaC02g08022 Brassica carinata HOM05D005957 ORTHO05D007318 8.8e-18 94.7 63 66.7
C04p59320 Brassica napus HOM05D005957 ORTHO05D007318 8.8e-18 94.7 63 66.7
BolC4t27440H Brassica oleracea HOM05D005957 ORTHO05D007318 8.8e-18 94.7 63 66.7
Zm00001eb350230 Zea mays HOM05D005957 ORTHO05D007318 1.1e-17 94.4 57 71.9
BcaC07g42550 Brassica carinata HOM05D005957 ORTHO05D007318 2.0e-17 93.6 63 61.9
Migut.D00827 Erythranthe guttata HOM05D005957 ORTHO05D007318 2.0e-17 93.6 209 33.0
Migut.N00743 Erythranthe guttata HOM05D005957 ORTHO05D007318 2.5e-17 93.2 209 34.4
Os05g0328300 Oryza sativa ssp. japonica HOM05D005957 ORTHO05D007318 2.2e-16 90.1 62 61.3
A09p66670 Brassica napus HOM05D005957 ORTHO05D007318 2.8e-16 89.7 63 61.9
BraA09t42007Z Brassica rapa HOM05D005957 ORTHO05D007318 2.8e-16 89.7 63 61.9
Dinv28722 Davidia involucrata HOM05D005957 ORTHO05D007318 4.8e-16 89.0 56 73.2
Zm00001eb330630 Zea mays HOM05D005957 ORTHO05D007318 8.2e-16 88.2 69 58.0
BcaC07g42036 Brassica carinata HOM05D005957 ORTHO05D007318 2.4e-15 86.7 62 59.7
BcaC07g42037 Brassica carinata HOM05D005957 ORTHO05D007318 2.4e-15 86.7 62 59.7
C08p50900 Brassica napus HOM05D005957 ORTHO05D007318 2.4e-15 86.7 62 59.7
BolC8t52618H Brassica oleracea HOM05D005957 ORTHO05D007318 2.4e-15 86.7 62 59.7
AUR62007156 Chenopodium quinoa HOM05D003140 ORTHO05D003851 9.1e-15 84.7 52 67.3
Dinv12270 Davidia involucrata HOM05D005957 ORTHO05D007318 4.5e-14 82.4 46 76.1
Ah.15g095100 Amaranthus hybridus HOM05D005957 ORTHO05D007318 5.0e-13 79.0 220 35.0
SEGI_34718 Sequoiadendron giganteum HOM05D005957 ORTHO05D007318 3.7e-08 62.8 60 43.3


User provided reference genes

Program Settings