Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023080 Daucus carota HOM05D002451 ORTHO05D005601 0.0e+00 1904.0 989 100.0
Dinv37977 Davidia involucrata HOM05D002451 ORTHO05D005601 2.5e-296 1022.3 1153 51.6
Lj9C513G3 Lonicera japonica HOM05D002451 ORTHO05D005601 1.4e-288 996.5 1134 50.5
GSVIVG01016980001 Vitis vinifera HOM05D002451 ORTHO05D005601 1.2e-269 933.7 1146 48.3
Rhsim08G0227600 Rhododendron simsii HOM05D002451 ORTHO05D005601 1.6e-263 913.3 924 52.9
TAR636G2911 Trochodendron aralioides HOM05D002451 ORTHO05D005601 6.8e-254 881.3 1151 45.4
Cc04_g02550 Coffea canephora HOM05D002451 ORTHO05D005601 1.7e-252 876.7 1150 44.8
Actinidia32098 Actinidia chinensis HOM05D002451 ORTHO05D005601 4.4e-245 852.0 1156 44.6
Sopen03g039860 Solanum pennellii HOM05D002451 ORTHO05D005601 1.7e-244 850.1 1140 45.3
Nn8g39071 Nelumbo nucifera HOM05D002451 ORTHO05D005601 2.2e-244 849.7 1155 43.5
Solyc03g121030.2 Solanum lycopersicum HOM05D002451 ORTHO05D005601 1.1e-243 847.4 1140 44.9
QL05p020031 Quercus lobata HOM05D002451 ORTHO05D005601 2.4e-243 846.3 918 50.8
CiPaw.01G231400 Carya illinoinensis HOM05D002451 ORTHO05D005601 2.0e-242 843.2 1154 44.4
Atru.chr1.3524 Acer truncatum HOM05D002451 ORTHO05D005601 1.0e-241 840.9 1153 44.7
TWI75G1452 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 1.7e-241 840.1 1089 44.9
Ciclev10024743m.g Citrus clementina HOM05D002451 ORTHO05D005601 1.5e-240 837.0 1151 44.1
Potri.003G048800 Populus trichocarpa HOM05D002451 ORTHO05D005601 1.2e-239 833.9 1149 43.0
Cfa003647 Carpinus fangiana HOM05D002451 ORTHO05D005601 2.1e-239 833.2 1146 44.2
Haze_15848 Corylus avellana HOM05D002451 ORTHO05D005601 3.6e-239 832.4 933 50.4
Prupe.3G059000 Prunus persica HOM05D002451 ORTHO05D005601 5.2e-238 828.6 1164 44.1
MSTRG.11027 Avicennia marina HOM05D002451 ORTHO05D005601 2.0e-237 826.6 1151 44.1
TWI12G0408 Tripterygium wilfordii HOM05D002451 ORTHO05D005601 5.8e-237 825.1 1154 42.7
CANSAT56G2471 Cannabis sativa HOM05D002451 ORTHO05D005601 4.9e-236 822.0 1137 44.0
CAN.G1143.14 Capsicum annuum HOM05D002451 ORTHO05D005601 1.4e-235 820.5 912 50.9
RcHm_v2.0_Chr2g0140541 Rosa chinensis HOM05D002451 ORTHO05D005601 1.9e-235 820.1 922 49.2
MD09G1202800 Malus domestica HOM05D002451 ORTHO05D005601 3.5e-234 815.8 1150 43.3
Migut.I00897 Erythranthe guttata HOM05D002451 ORTHO05D005601 4.3e-232 808.9 1146 43.5
Thecc.06G100100 Theobroma cacao HOM05D002451 ORTHO05D005601 9.5e-232 807.7 1155 42.7
Duzib192G0210 Durio zibethinus HOM05D002451 ORTHO05D005601 6.8e-230 801.6 1150 43.0
Manes.11G033500 Manihot esculenta HOM05D002451 ORTHO05D005601 1.3e-228 797.3 1152 42.8
Gorai.010G230600 Gossypium raimondii HOM05D002451 ORTHO05D005601 2.1e-226 790.0 1158 41.8
CsaV3_7G035270 Cucumis sativus L. HOM05D002451 ORTHO05D005601 6.0e-226 788.5 1144 42.6
Gohir.D06G197800 Gossypium hirsutum HOM05D002451 ORTHO05D005601 5.6e-224 781.9 1158 41.6
Sed0021872 Sechium edule HOM05D002451 ORTHO05D005601 1.2e-223 780.8 1141 42.4
TPR.G6596 Trifolium pratense HOM05D002451 ORTHO05D005601 4.0e-222 775.8 1152 41.8
PSO063G3373 Papaver somniferum HOM05D002451 ORTHO05D005601 5.2e-222 775.4 1152 41.9
Phvul.005G166100 Phaseolus vulgaris HOM05D002451 ORTHO05D005601 1.2e-221 774.2 1152 41.8
PSO832G2466 Papaver somniferum HOM05D002451 ORTHO05D005601 1.5e-221 773.9 1151 42.1
FAN05G4332 Fragaria x ananassa HOM05D002451 ORTHO05D005601 2.6e-221 773.1 1155 41.6
Medtr2g100870 Medicago truncatula HOM05D002451 ORTHO05D005601 3.4e-221 772.7 1154 41.8
Aqoxy7G01406 Aquilegia oxysepala HOM05D002451 ORTHO05D005601 9.9e-221 771.2 1144 40.7
MELO3C024437.2 Cucumis melo HOM05D002451 ORTHO05D005601 2.2e-220 770.0 917 48.5
ClCG09G000210 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.4e-219 767.3 922 47.3
Glyma.13G354600 Glycine max HOM05D002451 ORTHO05D005601 9.3e-219 764.6 1142 42.0
Ca_01165_v3 Cicer arietinum L. HOM05D002451 ORTHO05D005601 2.7e-218 763.1 1148 41.1
vmacro18852 Vaccinium macrocarpon HOM05D002451 ORTHO05D005601 2.5e-216 756.5 1005 43.9
COL.COLO4_30513 Corchorus olitorius HOM05D002451 ORTHO05D005601 3.1e-214 749.6 1137 41.8
PGR102G3176 Punica granatum HOM05D002451 ORTHO05D005601 2.0e-213 746.9 1144 39.9
Lj1g0009957 Lotus japonicus HOM05D002451 ORTHO05D005601 2.6e-213 746.5 1147 40.2
Eucgr.F03079 Eucalyptus grandis HOM05D002451 ORTHO05D005601 2.1e-210 736.9 916 45.5
Lalb_Chr14g0373021 Lupinus albus HOM05D002451 ORTHO05D005601 3.5e-210 736.1 1146 40.4
FAN02G1073 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.1e-208 731.1 1140 40.7
ECA232G2699 Erigeron canadensis HOM05D002451 ORTHO05D005601 2.5e-208 729.9 1136 41.0
Lsat_1_v5_gn_4_97440 Lactuca sativa HOM05D002451 ORTHO05D005601 5.6e-208 728.8 1129 40.8
MBI04_g20307_MAGBIO Magnolia biondii HOM05D002451 ORTHO05D005601 2.1e-207 726.9 1008 43.2
HanXRQChr09g0276251 Helianthus annuus HOM05D002451 ORTHO05D005601 2.8e-207 726.5 1131 40.6
SGA_v2.0_scaffold66G22528 Striga asiatica HOM05D002451 ORTHO05D005601 4.8e-207 725.7 902 45.9
Psat5g295800 Pisum sativum HOM05D002451 ORTHO05D005601 1.4e-206 724.2 954 44.7
Peaxi162Scf00038g01032 Petunia axillaris HOM05D002451 ORTHO05D005601 2.4e-206 723.4 930 45.3
Glyma.15G019600 Glycine max HOM05D002451 ORTHO05D005601 5.3e-206 722.2 1147 40.3
Sc10g0007590 Simmondsia chinensis HOM05D002451 ORTHO05D005601 9.0e-206 721.5 1156 39.5
AUR62031915 Chenopodium quinoa HOM05D002451 ORTHO05D005601 9.9e-205 718.0 1148 39.5
Medtr5g085950 Medicago truncatula HOM05D002451 ORTHO05D005601 1.3e-204 717.6 917 45.3
arahy.Tifrunner.gnm1.ann1.65X03I Arachis hypogaea HOM05D002451 ORTHO05D005601 4.2e-203 712.6 1143 39.0
arahy.Tifrunner.gnm1.ann1.T566S8 Arachis hypogaea HOM05D002451 ORTHO05D005601 5.1e-201 705.7 1140 38.9
AUR62022206 Chenopodium quinoa HOM05D002451 ORTHO05D005601 8.2e-199 698.4 917 43.8
Gohir.A06G189400 Gossypium hirsutum HOM05D002451 ORTHO05D005601 1.8e-198 697.2 1100 39.5
Hund07601 Selenicereus undatus HOM05D002451 ORTHO05D005601 2.5e-195 686.8 978 41.6
FvH4_6g32400 Fragaria vesca HOM05D002451 ORTHO05D005601 1.6e-194 684.1 1070 40.7
Oeu017119.1 Olea europaea HOM05D002451 ORTHO05D005601 4.8e-191 672.5 863 46.5
Nitab4.5_0006902g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 9.0e-190 668.3 1133 39.5
ATR0705G185 Amborella trichopoda HOM05D002451 ORTHO05D005601 5.1e-185 652.5 936 42.3
Carub.0008s0769 Capsella rubella HOM05D002451 ORTHO05D005601 2.6e-181 640.2 909 40.7
THA.LOC104809828 Tarenaya hassleriana HOM05D002451 ORTHO05D005601 2.2e-180 637.1 1148 37.8
Aa31LG11G5160 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.6e-178 630.9 907 40.7
Thhalv10003552m.g Eutrema salsugineum HOM05D002451 ORTHO05D005601 4.7e-178 629.4 905 41.3
BraA02t08709Z Brassica rapa HOM05D002451 ORTHO05D005601 3.9e-177 626.3 914 40.8
AT5G48120 Arabidopsis thaliana HOM05D002451 ORTHO05D005601 5.1e-177 625.9 915 40.9
Sp2g18530 Schrenkiella parvula HOM05D002451 ORTHO05D005601 3.3e-176 623.2 909 40.4
AL8G20730 Arabidopsis lyrata HOM05D002451 ORTHO05D005601 4.4e-176 622.9 909 40.3
BcaB07g30001 Brassica carinata HOM05D002451 ORTHO05D005601 2.2e-175 620.5 905 40.3
BcaC03g17628 Brassica carinata HOM05D002451 ORTHO05D005601 2.2e-175 620.5 907 40.9
BolC2t11683H Brassica oleracea HOM05D002451 ORTHO05D005601 2.2e-175 620.5 907 40.9
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 3.7e-175 619.8 836 44.7
Nitab4.5_0006467g0020 Nicotiana tabacum HOM05D002451 ORTHO05D005601 1.2e-173 614.8 1128 37.9
C02p56250 Brassica napus HOM05D002451 ORTHO05D005601 1.3e-172 611.3 905 40.4
Ah.01g022090 Amaranthus hybridus HOM05D002451 ORTHO05D005601 3.8e-172 609.8 865 41.3
A02p37220 Brassica napus HOM05D002451 ORTHO05D005601 2.5e-171 607.1 910 39.9
CARHR259290 Cardamine hirsuta HOM05D002451 ORTHO05D005601 8.0e-170 602.1 921 39.2
Sabra03G0029300 Salix brachista HOM05D002451 ORTHO05D005601 3.0e-169 600.1 753 43.8
HPP92_007690 Vanilla planifolia HOM05D002451 ORTHO05D005601 8.2e-167 592.0 1151 34.6
Zm00001eb301230 Zea mays HOM05D002451 ORTHO05D005601 3.5e-157 560.1 913 37.6
EL10Ac9g21204 Beta vulgaris HOM05D002451 ORTHO05D005601 6.1e-146 522.7 1070 34.8
FAN14G4820 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.5e-144 518.1 957 36.7
CSS0036196 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.8e-129 468.0 440 56.4
Cpa.g.sc25.8 Carica papaya HOM05D002451 ORTHO05D005601 1.9e-99 368.2 510 43.1
SEGI_26537 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 7.1e-94 349.7 836 31.8
CDE05G1834 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 5.1e-92 343.6 429 46.9
unitig_88.g27601 Utricularia gibba HOM05D002451 ORTHO05D005601 6.7e-92 343.2 631 36.1
Aa31LG11G5130 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.4e-88 330.9 434 43.8
Aa31sc1931G10 Aethionema arabicum HOM05D002451 ORTHO05D005601 1.8e-84 318.5 458 39.5
Pp3c9_4950 Physcomitrium patens HOM05D002451 ORTHO05D005601 9.6e-83 312.8 938 28.1
Mapoly0036s0119 Marchantia polymorpha HOM05D002451 ORTHO05D005601 1.9e-75 288.5 961 25.9
TAR624G0206 Trochodendron aralioides HOM05D002451 ORTHO05D005601 6.1e-69 266.9 351 43.9
CSS0044368 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 3.4e-64 251.1 195 66.2
Os07g0177100 Oryza sativa ssp. japonica HOM05D002451 ORTHO05D005601 1.8e-60 238.8 415 38.8
TAR624G0246 Trochodendron aralioides HOM05D002451 ORTHO05D005601 6.7e-60 236.9 195 63.1
SMO111G0185 Selaginella moellendorffii HOM05D002451 ORTHO05D005601 8.5e-55 219.9 885 26.1
Cpa.g.sc25.5 Carica papaya HOM05D002451 ORTHO05D005601 1.7e-50 205.7 258 46.5
Aa31LG9G10330 Aethionema arabicum HOM05D002451 ORTHO05D005601 2.4e-49 201.8 315 39.7
TAR624G0921 Trochodendron aralioides HOM05D002451 ORTHO05D005601 5.9e-48 197.2 247 43.3
Sabra03G0029200 Salix brachista HOM05D002451 ORTHO05D005601 6.3e-42 177.2 194 51.5
HPP92_007773 Vanilla planifolia HOM05D002451 ORTHO05D005601 6.5e-39 167.2 159 53.5
CBR_g26190 Chara braunii HOM05D002451 ORTHO05D005601 6.8e-36 157.1 465 29.5
Psat3g036640 Pisum sativum HOM05D002451 ORTHO05D005601 1.0e-28 133.3 172 46.5
HPP92_007804 Vanilla planifolia HOM05D002451 ORTHO05D005601 3.4e-27 128.3 163 47.2
EL10Ac9g21205 Beta vulgaris HOM05D002451 ORTHO05D005601 1.3e-26 126.3 180 42.8
unitig_88.g27602 Utricularia gibba HOM05D002451 ORTHO05D005601 1.7e-26 125.9 134 52.2
Zm00001eb320400 Zea mays HOM05D002451 ORTHO05D005601 1.1e-25 123.2 269 33.1
Psat4g171400 Pisum sativum HOM05D002451 ORTHO05D005601 1.4e-25 122.9 123 56.9
Sc17g0002930 Simmondsia chinensis HOM05D002451 ORTHO05D005601 7.0e-25 120.6 118 56.8
Aa31LG9G10320 Aethionema arabicum HOM05D002451 ORTHO05D005601 3.5e-24 118.2 121 49.6
CSS0023144 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.7e-23 115.9 132 47.7
SEGI_23779 Sequoiadendron giganteum HOM05D002451 ORTHO05D005601 9.5e-22 110.2 116 48.3
SHI11092 Sapria himalayana HOM05D002451 ORTHO05D005601 2.3e-20 105.5 127 45.7
Lj1g0017121 Lotus japonicus HOM05D002451 ORTHO05D005601 1.1e-17 96.7 94 52.1
Peaxi162Scf00038g01031 Petunia axillaris HOM05D002451 ORTHO05D005601 5.4e-17 94.4 55 87.3
CSS0026050 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.2e-16 93.2 63 76.2
CSS0028178 Camellia sinensis var. sinensis HOM05D002451 ORTHO05D005601 1.2e-16 93.2 63 76.2
Zm00001eb029900 Zea mays HOM05D002451 ORTHO05D005601 5.6e-14 84.3 96 46.9
MCO12G207 Micromonas commoda HOM05D002451 ORTHO05D005601 2.8e-13 82.0 281 25.6
Hund28869 Selenicereus undatus HOM05D002451 ORTHO05D005601 3.1e-12 78.6 59 69.5
TPR.G18837 Trifolium pratense HOM05D002451 ORTHO05D005601 6.8e-12 77.4 73 57.5
Hund28828 Selenicereus undatus HOM05D002451 ORTHO05D005601 3.4e-11 75.1 59 66.1
TPR.G18835 Trifolium pratense HOM05D002451 ORTHO05D005601 2.2e-10 72.4 60 60.0
Cpa.g.sc25.3 Carica papaya HOM05D002451 ORTHO05D005601 2.9e-10 72.0 63 58.7
ClCG09G000220 Citrullus lanatus HOM05D002451 ORTHO05D005601 1.4e-09 69.7 63 57.1
TPR.G18859 Trifolium pratense HOM05D002451 ORTHO05D005601 4.1e-09 68.2 101 39.6
TAR624G0431 Trochodendron aralioides HOM05D002451 ORTHO05D005601 5.4e-09 67.8 63 57.1
QL05p020001 Quercus lobata HOM05D002451 ORTHO05D005601 1.0e-07 63.5 91 45.1
CDE05G2530 Ceratophyllum demersum HOM05D002451 ORTHO05D005601 1.9e-06 59.3 63 54.0
vmacro17797 Vaccinium macrocarpon HOM05D000003 ORTHO05D000007 9.5e-06 57.0 59 47.5


User provided reference genes

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