Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 9.3e-135 483.8 290 100.0
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 1.5e-36 157.5 304 39.8
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 9.8e-36 154.8 290 37.9
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 1.7e-35 154.1 259 39.0
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 3.7e-35 152.9 286 38.5
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 1.9e-34 150.6 314 33.8
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 2.4e-34 150.2 298 37.9
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 3.2e-34 149.8 307 36.5
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 5.4e-34 149.1 340 35.9
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 9.2e-34 148.3 321 38.3
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 1.2e-33 147.9 320 35.9
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 1.6e-33 147.5 279 37.6
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 2.1e-33 147.1 320 35.9
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 2.7e-33 146.7 317 35.3
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 7.8e-33 145.2 293 36.9
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 2.3e-32 143.7 273 37.4
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 5.1e-32 142.5 316 33.5
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 6.6e-32 142.1 293 34.8
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 2.5e-31 140.2 300 35.7
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 9.5e-31 138.3 312 33.7
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 1.2e-30 137.9 300 33.7
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 1.6e-30 137.5 304 34.5
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 2.8e-30 136.7 274 35.0
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 2.8e-30 136.7 301 35.5
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 2.8e-30 136.7 320 31.9
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 3.6e-30 136.3 335 34.9
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 3.6e-30 136.3 319 32.9
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 4.7e-30 136.0 309 32.4
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 8.1e-30 135.2 299 34.1
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 8.1e-30 135.2 310 33.2
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 8.1e-30 135.2 326 32.8
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 8.1e-30 135.2 316 35.4
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 1.4e-29 134.4 307 36.8
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 1.4e-29 134.4 307 37.1
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 1.8e-29 134.0 282 35.8
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 2.3e-29 133.7 320 32.5
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 4.0e-29 132.9 306 32.7
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 5.2e-29 132.5 334 31.7
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 8.9e-29 131.7 325 34.5
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 1.2e-28 131.3 313 32.3
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 1.2e-28 131.3 325 34.2
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 2.0e-28 130.6 324 34.0
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 2.6e-28 130.2 280 32.9
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 2.6e-28 130.2 311 34.4
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 3.4e-28 129.8 314 32.2
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 3.4e-28 129.8 325 33.8
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 3.4e-28 129.8 325 34.2
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 7.6e-28 128.6 320 30.6
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 9.9e-28 128.3 292 37.3
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 1.3e-27 127.9 282 34.8
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.3e-27 127.9 280 32.5
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 1.3e-27 127.9 323 31.3
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 4.9e-27 125.9 290 34.5
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 4.9e-27 125.9 272 32.7
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 4.9e-27 125.9 299 36.8
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 6.4e-27 125.6 235 35.7
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 8.4e-27 125.2 280 33.2
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 1.1e-26 124.8 300 40.7
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 1.9e-26 124.0 291 41.6
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 1.9e-26 124.0 301 37.2
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 2.4e-26 123.6 314 32.2
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 4.1e-26 122.9 290 40.7
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 5.4e-26 122.5 337 38.0
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 5.4e-26 122.5 282 40.1
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 7.1e-26 122.1 291 32.3
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 9.2e-26 121.7 300 31.3
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 1.2e-25 121.3 301 34.2
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 1.2e-25 121.3 290 40.3
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.6e-25 120.9 320 30.6
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 2.1e-25 120.6 311 31.8
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 2.1e-25 120.6 323 33.7
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 2.7e-25 120.2 291 36.8
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 2.7e-25 120.2 319 35.4
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 6.0e-25 119.0 320 29.7
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 7.8e-25 118.6 288 31.9
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 7.8e-25 118.6 281 36.7
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 1.0e-24 118.2 300 34.3
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 1.0e-24 118.2 280 36.1
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 1.7e-24 117.5 320 29.4
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 1.7e-24 117.5 313 31.3
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 2.3e-24 117.1 309 36.2
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 3.0e-24 116.7 300 31.3
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 3.0e-24 116.7 295 31.5
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 5.1e-24 115.9 319 32.0
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 8.6e-24 115.2 333 37.2
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 1.9e-23 114.0 290 31.7
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 2.5e-23 113.6 294 32.3
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 3.3e-23 113.2 313 36.1
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 4.3e-23 112.8 298 32.6
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 7.3e-23 112.1 314 37.9
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 1.2e-22 111.3 296 32.4
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 1.2e-22 111.3 331 28.1
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 1.6e-22 110.9 324 30.2
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 2.1e-22 110.5 309 30.7
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 2.8e-22 110.2 196 38.8
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 3.6e-22 109.8 301 29.6
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 3.6e-22 109.8 279 36.2
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 1.8e-21 107.5 317 36.0
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 1.8e-21 107.5 296 32.4
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 3.1e-21 106.7 317 30.3
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 3.1e-21 106.7 296 29.4
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 1.5e-20 104.4 314 29.6
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 2.0e-20 104.0 278 30.6
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 4.4e-20 102.8 279 36.6
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 1.7e-19 100.9 315 30.2
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 1.7e-19 100.9 209 34.4
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 1.7e-19 100.9 324 27.8
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 2.2e-19 100.5 244 31.6
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 3.8e-19 99.8 303 32.3
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 3.8e-19 99.8 244 31.6
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 6.4e-19 99.0 203 33.5
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 1.1e-18 98.2 288 30.2
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 2.4e-18 97.1 200 35.0
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 4.2e-18 96.3 212 34.4
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 4.6e-17 92.8 183 35.5
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 1.7e-16 90.9 305 33.8
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 3.0e-16 90.1 216 31.9
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 3.0e-16 90.1 222 32.0
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 6.6e-16 89.0 306 32.7
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 7.3e-15 85.5 302 26.5
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 7.3e-15 85.5 316 27.8
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 2.1e-14 84.0 314 34.1
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 3.6e-14 83.2 230 33.0
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 8.1e-14 82.0 158 36.7
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 1.8e-13 80.9 176 34.7
Zm00001eb121210 Zea mays HOM05D005472 ORTHO05D005897 1.5e-12 77.8 211 31.3
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 1.3e-11 74.7 282 35.5
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 8.4e-11 72.0 231 26.8
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 4.2e-10 69.7 352 26.7
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 3.5e-09 66.6 216 29.6
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 6.0e-09 65.9 214 30.4
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 5.1e-08 62.8 135 37.0
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 8.7e-08 62.0 224 28.1
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 8.7e-08 62.0 186 31.2
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 2.1e-06 57.4 295 30.2


User provided reference genes

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