Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 7.7e-48 194.9 260 100.0
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 2.7e-32 143.3 243 87.2
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 7.7e-32 141.7 250 85.2
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 2.5e-30 136.7 243 86.0
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 8.0e-29 131.7 261 81.2
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 8.0e-29 131.7 243 86.0
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 1.0e-28 131.3 260 83.5
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.8e-28 130.6 262 84.0
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 2.3e-28 130.2 251 77.3
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 3.0e-28 129.8 249 83.1
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 3.0e-28 129.8 270 79.6
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 4.0e-28 129.4 260 76.5
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 6.8e-28 128.6 233 86.7
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 8.9e-28 128.3 271 78.6
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 1.2e-27 127.9 265 78.9
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 1.2e-27 127.9 272 78.3
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 9.8e-27 124.8 260 80.8
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 2.8e-26 123.2 249 77.1
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 3.7e-26 122.9 259 74.1
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 4.9e-26 122.5 246 82.5
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 4.9e-26 122.5 268 73.1
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 8.3e-26 121.7 260 82.7
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 1.4e-25 120.9 249 83.1
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 2.4e-25 120.2 260 79.2
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 3.1e-25 119.8 263 77.2
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 5.4e-25 119.0 255 74.5
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 9.2e-25 118.2 256 75.4
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 2.0e-24 117.1 253 79.4
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 2.7e-24 116.7 249 76.7
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 3.5e-24 116.3 256 74.2
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 5.9e-24 115.5 250 81.6
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 7.8e-24 115.2 258 73.3
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 7.8e-24 115.2 254 73.6
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 1.3e-23 114.4 250 75.2
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 1.3e-23 114.4 250 75.2
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 1.7e-23 114.0 256 73.4
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.7e-23 114.0 231 86.1
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 2.3e-23 113.6 259 73.0
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 2.3e-23 113.6 268 76.5
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 2.9e-23 113.2 258 73.3
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 2.9e-23 113.2 240 80.4
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 6.6e-23 112.1 259 64.5
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 1.1e-22 111.3 256 73.8
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 1.1e-22 111.3 256 73.8
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 1.1e-22 111.3 268 73.1
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 2.5e-22 110.2 243 77.4
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 3.3e-22 109.8 265 77.7
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 3.3e-22 109.8 247 77.7
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 4.3e-22 109.4 243 76.5
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 5.6e-22 109.0 229 74.2
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 7.3e-22 108.6 150 88.0
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 7.3e-22 108.6 274 73.4
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 1.6e-21 107.5 256 73.8
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 3.6e-21 106.3 254 74.4
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 3.6e-21 106.3 274 70.8
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 6.8e-20 102.1 229 86.0
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 5.8e-19 99.0 51 86.3
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 9.8e-19 98.2 189 82.0
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 1.3e-18 97.8 276 80.1
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 1.7e-18 97.4 273 70.0
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 1.7e-18 97.4 254 81.5
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 2.2e-18 97.1 178 89.3
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 2.9e-18 96.7 256 71.5
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 4.9e-18 95.9 182 86.3
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.1e-17 94.7 193 83.4
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 4.1e-17 92.8 240 73.3
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 5.4e-17 92.4 277 75.5
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 1.6e-16 90.9 274 76.3
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 1.6e-16 90.9 256 62.9
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 2.7e-16 90.1 115 84.3
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.6e-16 89.4 273 76.6
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 4.6e-16 89.4 67 76.1
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.0e-15 88.2 276 75.0
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 2.3e-15 87.0 50 74.0
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 2.3e-15 87.0 67 64.2
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 3.9e-15 86.3 232 79.7
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 5.0e-15 85.9 186 81.7
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 1.1e-14 84.7 257 75.9
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 1.5e-14 84.3 190 82.6
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.5e-14 84.3 63 69.8
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 3.3e-14 83.2 67 71.6
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 4.3e-14 82.8 134 80.6
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 4.3e-14 82.8 134 80.6
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 4.3e-14 82.8 134 80.6
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 7.3e-14 82.0 51 72.5
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 9.5e-14 81.6 49 73.5
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 9.5e-14 81.6 49 73.5
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.6e-13 80.9 50 70.0
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 2.8e-13 80.1 52 71.2
Duzib132G0628 Durio zibethinus HOM05D004463 ORTHO05D004724 3.6e-13 79.7 224 81.7
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 3.6e-13 79.7 51 74.5
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 1.1e-12 78.2 135 80.0
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 1.1e-12 78.2 236 74.2
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 1.4e-12 77.8 67 67.2
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 1.8e-12 77.4 52 69.2
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 1.8e-12 77.4 52 69.2
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 2.3e-12 77.0 233 69.5
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 2.3e-12 77.0 44 72.7
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 2.3e-12 77.0 50 68.0
Haze_03437 Corylus avellana HOM05D004463 ORTHO05D004724 5.2e-12 75.9 226 77.0
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 6.8e-12 75.5 51 68.6
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 6.8e-12 75.5 51 60.8
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 1.2e-11 74.7 48 72.9
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 1.5e-11 74.3 249 76.7
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 2.0e-11 73.9 52 65.4
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 3.4e-11 73.2 236 72.9
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 3.4e-11 73.2 51 66.7
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 3.4e-11 73.2 48 66.7
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 4.4e-11 72.8 47 72.3
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 9.8e-11 71.6 50 62.0
CSS0016875 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 2.2e-10 70.5 219 82.2
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 1.4e-09 67.8 50 58.0
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 1.4e-09 67.8 50 58.0
SGA_v2.0_scaffold32G13220 Striga asiatica HOM05D039287 ORTHO05D004724 1.4e-09 67.8 142 81.0
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 1.4e-09 67.8 51 60.8
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.9e-09 67.4 58 53.4
Lj9P382T32 Lonicera japonica HOM05D004463 ORTHO05D004724 1.6e-08 64.3 147 79.6
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 2.1e-08 63.9 48 60.4
EL10Ac1g00556 Beta vulgaris HOM05D004463 ORTHO05D004724 3.5e-08 63.2 93 38.7
Nn6g32238 Nelumbo nucifera HOM05D004463 ORTHO05D004724 4.6e-08 62.8 34 82.4
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 6.0e-08 62.4 247 69.2
MBI19_g03564_MAGBIO Magnolia biondii HOM05D004463 ORTHO05D004724 1.3e-07 61.2 218 81.7
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 1.3e-07 61.2 51 56.9
Nitab4.5_0001370g0080 Nicotiana tabacum HOM05D004463 ORTHO05D004724 1.7e-07 60.8 47 63.8
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 1.7e-07 60.8 226 79.6
TWI75G1243 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 2.3e-07 60.5 266 52.3
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 3.0e-07 60.1 48 58.3
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 5.0e-07 59.3 51 54.9
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 5.0e-07 59.3 43 62.8
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 6.6e-07 58.9 51 54.9
Lsat_1_v5_gn_4_67220 Lactuca sativa HOM05D039287 ORTHO05D004724 6.6e-07 58.9 149 81.2
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 1.1e-06 58.2 51 54.9
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 1.1e-06 58.2 43 58.1
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 1.9e-06 57.4 42 59.5
ATR0998G002 Amborella trichopoda HOM05D004463 ORTHO05D004724 3.3e-06 56.6 207 82.6
AUR62010398 Chenopodium quinoa HOM05D004463 ORTHO05D004724 3.3e-06 56.6 109 89.0
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 4.3e-06 56.2 51 52.9
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 4.3e-06 56.2 50 52.0
Sc20g0004810 Simmondsia chinensis HOM05D004463 ORTHO05D004724 4.3e-06 56.2 42 66.7
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 4.3e-06 56.2 51 52.9
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 5.6e-06 55.8 42 59.5
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 5.6e-06 55.8 52 51.9
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 9.5e-06 55.1 46 50.0


User provided reference genes

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