Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_022883 Daucus carota HOM05D064377 ORTHO05D003917 1.1e-182 643.3 345 100.0
DCAR_022884 Daucus carota HOM05D064377 ORTHO05D174937 4.1e-129 465.3 261 95.4
DCAR_006771 Daucus carota HOM05D000526 ORTHO05D003917 6.4e-26 122.5 121 54.5
CSS0044016 Camellia sinensis var. sinensis HOM05D003389 ORTHO05D003917 1.1e-20 105.1 121 46.3
Medtr5g011090 Medicago truncatula HOM05D003389 ORTHO05D003917 2.4e-20 104.0 143 44.8
Ca_06667_v3 Cicer arietinum L. HOM05D003389 ORTHO05D003917 4.0e-20 103.2 128 46.9
Dinv37703 Davidia involucrata HOM05D003389 ORTHO05D003917 4.0e-20 103.2 120 47.5
Cpa.g.sc29.32 Carica papaya HOM05D003389 ORTHO05D003917 2.6e-19 100.5 127 42.5
Manes.01G069600 Manihot esculenta HOM05D003389 ORTHO05D003917 2.6e-19 100.5 123 44.7
DCAR_008431 Daucus carota HOM05D003389 ORTHO05D003917 3.4e-19 100.1 126 46.8
Duzib068G0926 Durio zibethinus HOM05D003389 ORTHO05D003917 4.5e-19 99.8 137 40.1
Actinidia05234 Actinidia chinensis HOM05D003389 ORTHO05D003917 5.8e-19 99.4 121 45.5
arahy.Tifrunner.gnm1.ann1.18T4MA Arachis hypogaea HOM05D003389 ORTHO05D003917 5.8e-19 99.4 122 46.7
arahy.Tifrunner.gnm1.ann1.HGX6IC Arachis hypogaea HOM05D003389 ORTHO05D003917 5.8e-19 99.4 122 46.7
COL.COLO4_23793 Corchorus olitorius HOM05D003389 ORTHO05D003917 5.8e-19 99.4 122 45.9
Lj2C200G2 Lonicera japonica HOM05D003389 ORTHO05D003917 7.6e-19 99.0 121 45.5
Lalb_Chr09g0324691 Lupinus albus HOM05D003389 ORTHO05D003917 7.6e-19 99.0 124 46.0
Thecc.03G268500 Theobroma cacao HOM05D003389 ORTHO05D003917 7.6e-19 99.0 122 45.1
Actinidia14499 Actinidia chinensis HOM05D003389 ORTHO05D003917 1.0e-18 98.6 124 45.2
Psat2g181120 Pisum sativum HOM05D003389 ORTHO05D003917 1.3e-18 98.2 122 46.7
CiPaw.11G142600 Carya illinoinensis HOM05D003389 ORTHO05D003917 1.7e-18 97.8 99 52.5
Cc08_g13790 Coffea canephora HOM05D003389 ORTHO05D003917 1.7e-18 97.8 123 43.9
MD04G1069800 Malus domestica HOM05D003389 ORTHO05D003917 1.7e-18 97.8 124 45.2
Duzib205G0992 Durio zibethinus HOM05D003389 ORTHO05D003917 2.2e-18 97.4 137 40.9
Lj2C201G3 Lonicera japonica HOM05D003389 ORTHO05D003917 2.2e-18 97.4 121 44.6
Lj2g0004762 Lotus japonicus HOM05D003389 ORTHO05D003917 2.2e-18 97.4 122 46.7
Gorai.007G022100 Gossypium raimondii HOM05D003389 ORTHO05D003917 4.9e-18 96.3 97 48.5
MD06G1071200 Malus domestica HOM05D003389 ORTHO05D003917 4.9e-18 96.3 100 50.0
Gohir.A11G021100 Gossypium hirsutum HOM05D003389 ORTHO05D003917 6.5e-18 95.9 97 47.4
Glyma.01G214700 Glycine max HOM05D003389 ORTHO05D003917 8.4e-18 95.5 124 45.2
Phvul.002G153200 Phaseolus vulgaris HOM05D003389 ORTHO05D003917 8.4e-18 95.5 137 41.6
CDE12G0302 Ceratophyllum demersum HOM05D003389 ORTHO05D003917 1.1e-17 95.1 124 44.4
Gohir.A08G177400 Gossypium hirsutum HOM05D003389 ORTHO05D003917 1.1e-17 95.1 121 43.8
CiPaw.12G100200 Carya illinoinensis HOM05D003389 ORTHO05D003917 1.4e-17 94.7 123 46.3
Gorai.004G206500 Gossypium raimondii HOM05D003389 ORTHO05D003917 1.4e-17 94.7 121 43.8
ECA233G2019 Erigeron canadensis HOM05D003389 ORTHO05D003917 1.9e-17 94.4 141 36.9
Gohir.D08G195800 Gossypium hirsutum HOM05D003389 ORTHO05D003917 1.9e-17 94.4 121 43.8
Sc07g0009480 Simmondsia chinensis HOM05D003389 ORTHO05D003917 1.9e-17 94.4 122 44.3
Dinv39033 Davidia involucrata HOM05D003389 ORTHO05D003917 4.2e-17 93.2 127 42.5
Sabra01G0085800 Salix brachista HOM05D003389 ORTHO05D003917 4.2e-17 93.2 99 49.5
Atru.chr9.1507 Acer truncatum HOM05D003389 ORTHO05D003917 7.1e-17 92.4 124 41.1
QL12p016621 Quercus lobata HOM05D003389 ORTHO05D003917 7.1e-17 92.4 123 44.7
SalBow1G6995 Salvia bowleyana HOM05D003262 ORTHO05D003917 9.3e-17 92.0 121 41.3
Cfa012079 Carpinus fangiana HOM05D003389 ORTHO05D003917 1.2e-16 91.7 121 43.8
Gohir.D09G187700 Gossypium hirsutum HOM05D003389 ORTHO05D003917 1.2e-16 91.7 120 42.5
Gorai.006G210500 Gossypium raimondii HOM05D003389 ORTHO05D003917 1.2e-16 91.7 120 42.5
FAN13G0159 Fragaria x ananassa HOM05D003389 ORTHO05D003917 1.6e-16 91.3 127 42.5
Glyma.11G027200 Glycine max HOM05D003389 ORTHO05D003917 1.6e-16 91.3 124 43.5
MBI11_g05095_MAGBIO Magnolia biondii HOM05D003389 ORTHO05D003917 1.6e-16 91.3 148 37.8
Oeu001902.1 Olea europaea HOM05D003389 ORTHO05D003917 1.6e-16 91.3 99 47.5
Aqoxy5G03952 Aquilegia oxysepala HOM05D003389 ORTHO05D003917 2.1e-16 90.9 123 43.9
Nn6g34315 Nelumbo nucifera HOM05D003389 ORTHO05D003917 2.1e-16 90.9 139 38.8
Lsat_1_v5_gn_6_10400 Lactuca sativa HOM05D003389 ORTHO05D003917 2.7e-16 90.5 97 50.5
Potri.001G112300 Populus trichocarpa HOM05D003389 ORTHO05D003917 3.5e-16 90.1 98 49.0
Rhsim11G0008000 Rhododendron simsii HOM05D003389 ORTHO05D003917 3.5e-16 90.1 135 40.0
Sed0009929 Sechium edule HOM05D003389 ORTHO05D003917 3.5e-16 90.1 122 44.3
FAN04G3242 Fragaria x ananassa HOM05D003389 ORTHO05D003917 4.6e-16 89.7 127 41.7
FAN08G2451 Fragaria x ananassa HOM05D003389 ORTHO05D003917 4.6e-16 89.7 127 41.7
Duzib084G0706 Durio zibethinus HOM05D003389 ORTHO05D003917 6.0e-16 89.4 139 38.1
Gohir.A09G193500 Gossypium hirsutum HOM05D003389 ORTHO05D003917 6.0e-16 89.4 120 41.7
Peaxi162Scf00620g00617 Petunia axillaris HOM05D003389 ORTHO05D003917 6.0e-16 89.4 126 41.3
VMungo1215G1985 Vigna mungo HOM05D003389 ORTHO05D003917 6.0e-16 89.4 99 47.5
GSVIVG01019881001 Vitis vinifera HOM05D003389 ORTHO05D003917 6.0e-16 89.4 123 43.1
TAR636G0614 Trochodendron aralioides HOM05D003389 ORTHO05D003917 7.9e-16 89.0 125 42.4
Aa31LG9G10590 Aethionema arabicum HOM05D003389 ORTHO05D003917 1.0e-15 88.6 127 41.7
CANSAT21G1884 Cannabis sativa HOM05D003389 ORTHO05D003917 1.0e-15 88.6 128 41.4
Lj8A241G19 Lonicera japonica HOM05D003389 ORTHO05D003917 1.0e-15 88.6 120 41.7
Nn1g01292 Nelumbo nucifera HOM05D003389 ORTHO05D003917 1.0e-15 88.6 134 41.8
PSO782G1906 Papaver somniferum HOM05D003389 ORTHO05D003917 1.0e-15 88.6 97 48.5
PSO478G1498 Papaver somniferum HOM05D003389 ORTHO05D003917 1.3e-15 88.2 97 48.5
unitig_699.g19759 Utricularia gibba HOM05D003389 ORTHO05D003917 1.8e-15 87.8 124 40.3
Eucgr.D01938 Eucalyptus grandis HOM05D003389 ORTHO05D003917 2.3e-15 87.4 122 41.8
Sed0023838 Sechium edule HOM05D003389 ORTHO05D003917 2.3e-15 87.4 123 43.1
MELO3C005619.2 Cucumis melo HOM05D003389 ORTHO05D003917 3.0e-15 87.0 137 40.1
CsaV3_5G003350 Cucumis sativus L. HOM05D003389 ORTHO05D003917 5.1e-15 86.3 122 42.6
BcaC04g21168 Brassica carinata HOM05D003389 ORTHO05D003917 6.7e-15 85.9 123 42.3
C09p34580 Brassica napus HOM05D003389 ORTHO05D003917 6.7e-15 85.9 123 42.3
BolC9t56305H Brassica oleracea HOM05D003389 ORTHO05D003917 6.7e-15 85.9 123 42.3
CSS0021110 Camellia sinensis var. sinensis HOM05D003389 ORTHO05D003917 6.7e-15 85.9 134 38.8
THA.LOC104806361 Tarenaya hassleriana HOM05D003389 ORTHO05D003917 6.7e-15 85.9 125 40.0
TPR.G19581 Trifolium pratense HOM05D003389 ORTHO05D003917 6.7e-15 85.9 131 41.2
TWI81G0612 Tripterygium wilfordii HOM05D003389 ORTHO05D003917 6.7e-15 85.9 123 40.7
BcaB01g01683 Brassica carinata HOM05D003389 ORTHO05D003917 8.7e-15 85.5 123 42.3
A09p27250 Brassica napus HOM05D003389 ORTHO05D003917 8.7e-15 85.5 123 42.3
BraA09t38293Z Brassica rapa HOM05D003389 ORTHO05D003917 8.7e-15 85.5 123 42.3
Manes.02G030300 Manihot esculenta HOM05D003389 ORTHO05D003917 8.7e-15 85.5 126 41.3
TWI15G1193 Tripterygium wilfordii HOM05D003389 ORTHO05D003917 8.7e-15 85.5 123 40.7
CARHR254440 Cardamine hirsuta HOM05D003389 ORTHO05D003917 1.1e-14 85.1 128 39.1
ClCG01G003270 Citrullus lanatus HOM05D003389 ORTHO05D003917 1.1e-14 85.1 138 39.1
Migut.E01161 Erythranthe guttata HOM05D003389 ORTHO05D003917 1.1e-14 85.1 146 35.6
Thhalv10028490m.g Eutrema salsugineum HOM05D003389 ORTHO05D003917 1.1e-14 85.1 125 40.0
vmacro00214 Vaccinium macrocarpon HOM05D003389 ORTHO05D003917 1.5e-14 84.7 140 37.1
EL10Ac5g12710 Beta vulgaris HOM05D003389 ORTHO05D003917 1.9e-14 84.3 131 39.7
Carub.0006s3095 Capsella rubella HOM05D003389 ORTHO05D003917 1.9e-14 84.3 125 40.0
Potri.003G119800 Populus trichocarpa HOM05D003389 ORTHO05D003917 1.9e-14 84.3 128 39.1
FAN18G0817 Fragaria x ananassa HOM05D003389 ORTHO05D003917 2.5e-14 84.0 127 40.2
Sp6g05610 Schrenkiella parvula HOM05D003389 ORTHO05D003917 2.5e-14 84.0 125 40.0
THA.LOC104814202 Tarenaya hassleriana HOM05D003389 ORTHO05D003917 2.5e-14 84.0 126 39.7
Nitab4.5_0008362g0010 Nicotiana tabacum HOM05D003389 ORTHO05D003917 3.3e-14 83.6 100 45.0
RcHm_v2.0_Chr7g0199771 Rosa chinensis HOM05D003389 ORTHO05D003917 3.3e-14 83.6 127 39.4
SEGI_34401 Sequoiadendron giganteum HOM05D003389 ORTHO05D003917 3.3e-14 83.6 143 35.7
AT4G11860 Arabidopsis thaliana HOM05D003389 ORTHO05D003917 4.3e-14 83.2 125 40.0
Hund11535 Selenicereus undatus HOM05D003389 ORTHO05D003917 4.3e-14 83.2 124 39.5
Ciclev10019075m.g Citrus clementina HOM05D003389 ORTHO05D003917 5.7e-14 82.8 131 38.9
FvH4_5g01250 Fragaria vesca HOM05D003389 ORTHO05D003917 7.4e-14 82.4 127 39.4
PGR031G2775 Punica granatum HOM05D003389 ORTHO05D003917 9.7e-14 82.0 93 46.2
Lalb_Chr05g0214741 Lupinus albus HOM05D003389 ORTHO05D003917 1.3e-13 81.6 64 59.4
Sabra03G0084000 Salix brachista HOM05D003389 ORTHO05D003917 1.6e-13 81.3 94 44.7
SGA_v2.0_scaffold144G35980 Striga asiatica HOM05D003389 ORTHO05D003917 1.6e-13 81.3 100 43.0
CAN.G981.56 Capsicum annuum HOM05D003389 ORTHO05D003917 2.2e-13 80.9 126 40.5
FAN09G1540 Fragaria x ananassa HOM05D003389 ORTHO05D003917 2.2e-13 80.9 48 72.9
HPP92_022000 Vanilla planifolia HOM05D003389 ORTHO05D003917 2.2e-13 80.9 89 47.2
Gohir.D11G020800 Gossypium hirsutum HOM05D003389 ORTHO05D003917 3.7e-13 80.1 60 56.7
Lsat_1_v5_gn_6_79100 Lactuca sativa HOM05D003389 ORTHO05D003917 3.7e-13 80.1 140 36.4
Sopen08g028470 Solanum pennellii HOM05D003389 ORTHO05D003917 3.7e-13 80.1 98 40.8
CDE04G0877 Ceratophyllum demersum HOM05D003389 ORTHO05D003917 4.8e-13 79.7 125 40.8
Prupe.5G088000 Prunus persica HOM05D003389 ORTHO05D003917 4.8e-13 79.7 60 60.0
Ah.12g057800 Amaranthus hybridus HOM05D003389 ORTHO05D003917 6.3e-13 79.3 98 43.9
ECA240G1577 Erigeron canadensis HOM05D003389 ORTHO05D003917 6.3e-13 79.3 98 41.8
Migut.A00906 Erythranthe guttata HOM05D003389 ORTHO05D003917 6.3e-13 79.3 98 41.8
TAR636G1874 Trochodendron aralioides HOM05D003389 ORTHO05D003917 8.2e-13 79.0 60 58.3
RcHm_v2.0_Chr1g0379891 Rosa chinensis HOM05D003389 ORTHO05D003917 1.1e-12 78.6 139 36.0
PGSC0003DMG400022735 Solanum tuberosum HOM05D003389 ORTHO05D003917 1.4e-12 78.2 138 37.0
HanXRQChr11g0336621 Helianthus annuus HOM05D003389 ORTHO05D003917 2.4e-12 77.4 133 36.1
SHI13491 Sapria himalayana HOM05D003389 ORTHO05D003917 2.4e-12 77.4 134 36.6
SalBow6G3358 Salvia bowleyana HOM05D003389 ORTHO05D003917 3.1e-12 77.0 60 55.0
AUR62010575 Chenopodium quinoa HOM05D003389 ORTHO05D003917 2.0e-11 74.3 48 64.6
Migut.A00905 Erythranthe guttata HOM05D003389 ORTHO05D003917 2.0e-11 74.3 96 40.6
SGA_v2.0_scaffold286G47125 Striga asiatica HOM05D003389 ORTHO05D003917 2.6e-11 73.9 60 53.3
ATR0661G488 Amborella trichopoda HOM05D003389 ORTHO05D003917 3.4e-11 73.6 93 46.2
Haze_08980 Corylus avellana HOM05D003389 ORTHO05D003917 5.9e-11 72.8 122 39.3
Nitab4.5_0001714g0090 Nicotiana tabacum HOM05D003389 ORTHO05D003917 1.0e-10 72.0 75 52.0
SMO367G0360 Selaginella moellendorffii HOM05D003389 ORTHO05D003917 1.3e-10 71.6 103 39.8
FAN09G4798 Fragaria x ananassa HOM05D003389 ORTHO05D003917 6.5e-10 69.3 67 52.2
AUR62017315 Chenopodium quinoa HOM05D003389 ORTHO05D003917 8.5e-10 68.9 43 67.4
MBI04_g06622_MAGBIO Magnolia biondii HOM05D003389 ORTHO05D003917 1.4e-09 68.2 82 41.5
PSO302G0081 Papaver somniferum HOM05D003389 ORTHO05D003917 5.5e-09 66.2 95 42.1
FAN09G0964 Fragaria x ananassa HOM05D003389 ORTHO05D003917 7.2e-09 65.9 65 50.8
TAR636G1472 Trochodendron aralioides HOM05D003389 ORTHO05D003917 7.2e-09 65.9 55 52.7
A01p14230 Brassica napus HOM05D003389 ORTHO05D003917 1.2e-08 65.1 95 33.7
PSO170G2389 Papaver somniferum HOM05D003389 ORTHO05D003917 1.6e-08 64.7 95 41.1
Zm00001eb272510 Zea mays HOM05D003389 ORTHO05D003917 1.6e-08 64.7 95 36.8
BraA01t01370Z Brassica rapa HOM05D003389 ORTHO05D003917 2.1e-08 64.3 95 33.7
CBR_g38139 Chara braunii HOM05D003389 ORTHO05D003917 2.1e-08 64.3 53 47.2
C01p17500 Brassica napus HOM05D003389 ORTHO05D003917 3.6e-08 63.5 114 31.6
Eucgr.D01937 Eucalyptus grandis HOM05D003389 ORTHO05D003917 3.6e-08 63.5 91 38.5
BcaC09g51049 Brassica carinata HOM05D003389 ORTHO05D003917 6.1e-08 62.8 95 33.7
BolC1t01690H Brassica oleracea HOM05D003389 ORTHO05D003917 6.1e-08 62.8 95 33.7
Mapoly0108s0010 Marchantia polymorpha HOM05D003389 ORTHO05D003917 6.1e-08 62.8 97 36.1
Os06g0712400 Oryza sativa ssp. japonica HOM05D003389 ORTHO05D003917 1.0e-07 62.0 99 36.4
AagrBONN_evm.TU.Sc2ySwM_228.3893 Anthoceros agrestis HOM05D003389 ORTHO05D003917 2.3e-07 60.8 53 49.1
AL7G30560 Arabidopsis lyrata HOM05D003389 ORTHO05D003917 8.8e-07 58.9 100 34.0
Zm00001eb227790 Zea mays HOM05D003389 ORTHO05D003917 1.1e-06 58.5 48 50.0
BcaNung01008 Brassica carinata HOM05D003389 ORTHO05D003917 1.5e-06 58.2 50 48.0
VMungo1383G1658 Vigna mungo HOM05D003389 ORTHO05D003917 1.5e-06 58.2 81 42.0
HanXRQChr02g0043491 Helianthus annuus HOM05D003389 ORTHO05D003917 3.3e-06 57.0 50 52.0
Pp3c12_2860 Physcomitrium patens HOM05D003389 ORTHO05D003917 7.4e-06 55.8 106 32.1
Sp7g21050 Schrenkiella parvula HOM05D003389 ORTHO05D003917 9.7e-06 55.5 48 45.8


User provided reference genes

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