Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_022863 Daucus carota HOM05D006008 ORTHO05D007334 1.2e-179 634.8 833 100.0
Actinidia23109 Actinidia chinensis HOM05D006008 ORTHO05D007334 3.4e-84 317.8 255 66.3
Dinv08184 Davidia involucrata HOM05D006008 ORTHO05D007334 2.4e-82 311.6 251 67.7
CSS0033722 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.2e-81 309.3 250 68.0
Atru.chr7.2558 Acer truncatum HOM05D006008 ORTHO05D007334 1.0e-77 296.2 259 64.1
Migut.A00359 Erythranthe guttata HOM05D006008 ORTHO05D007334 2.3e-77 295.0 252 62.7
Cfa013044 Carpinus fangiana HOM05D006008 ORTHO05D007334 6.8e-77 293.5 247 64.0
vmacro05220 Vaccinium macrocarpon HOM05D006008 ORTHO05D007334 4.9e-75 287.3 257 61.1
Rhsim07G0155900 Rhododendron simsii HOM05D006008 ORTHO05D007334 4.5e-73 280.8 255 61.2
Haze_21405 Corylus avellana HOM05D006008 ORTHO05D007334 5.0e-72 277.3 239 63.2
Potri.006G264800 Populus trichocarpa HOM05D006008 ORTHO05D007334 1.9e-71 275.4 254 57.9
Manes.08G047700 Manihot esculenta HOM05D006008 ORTHO05D007334 4.3e-71 274.2 256 57.4
Sabra06G0206900 Salix brachista HOM05D006008 ORTHO05D007334 1.2e-70 272.7 250 58.0
Lsat_1_v5_gn_2_36140 Lactuca sativa HOM05D006008 ORTHO05D007334 2.1e-70 271.9 257 58.4
Cpa.g.sc148.18 Carica papaya HOM05D006008 ORTHO05D007334 3.1e-69 268.1 258 56.2
Nitab4.5_0000147g0080 Nicotiana tabacum HOM05D006008 ORTHO05D007334 5.2e-69 267.3 269 56.5
SalBow4G1429 Salvia bowleyana HOM05D006008 ORTHO05D007334 6.8e-69 266.9 258 55.8
Duzib187G0883 Durio zibethinus HOM05D006008 ORTHO05D007334 1.2e-68 266.2 243 59.3
Thecc.09G015100 Theobroma cacao HOM05D006008 ORTHO05D007334 2.6e-68 265.0 253 57.7
Sc09g0010690 Simmondsia chinensis HOM05D006008 ORTHO05D007334 7.5e-68 263.5 249 57.4
Hund20025 Selenicereus undatus HOM05D006008 ORTHO05D007334 1.7e-67 262.3 243 56.8
Lj7P735T18 Lonicera japonica HOM05D006008 ORTHO05D007334 2.2e-67 261.9 759 81.6
Phvul.009G086500 Phaseolus vulgaris HOM05D006008 ORTHO05D007334 2.2e-67 261.9 247 56.7
VMungo1309G2388 Vigna mungo HOM05D006008 ORTHO05D007334 3.7e-67 261.2 247 56.7
RcHm_v2.0_Chr6g0299351 Rosa chinensis HOM05D006008 ORTHO05D007334 8.3e-67 260.0 216 61.6
CANSAT54G1994 Cannabis sativa HOM05D006008 ORTHO05D007334 2.0e-65 255.4 258 54.7
Peaxi162Scf01286g00125 Petunia axillaris HOM05D006008 ORTHO05D007334 2.7e-65 255.0 881 72.4
Gorai.009G063400 Gossypium raimondii HOM05D006008 ORTHO05D007334 3.5e-65 254.6 252 56.3
TAR362G1189 Trochodendron aralioides HOM05D006008 ORTHO05D007334 3.5e-65 254.6 249 58.2
Gohir.D05G062300 Gossypium hirsutum HOM05D006008 ORTHO05D007334 4.6e-65 254.2 252 56.3
CSS0011965 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.0e-64 253.1 741 86.0
CSS0032373 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.0e-64 253.1 741 86.0
SGA_v2.0_scaffold147G36344 Striga asiatica HOM05D006008 ORTHO05D007334 5.0e-64 250.8 244 54.1
CSS0025914 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.5e-63 249.2 188 70.7
Solyc04g015440.4 Solanum lycopersicum HOM05D006008 ORTHO05D007334 1.6e-62 245.7 288 51.4
ECA234G3283 Erigeron canadensis HOM05D006008 ORTHO05D007334 2.8e-62 245.0 195 64.6
TWI63G1661 Tripterygium wilfordii HOM05D006008 ORTHO05D007334 3.6e-62 244.6 252 54.4
Gohir.A05G060100 Gossypium hirsutum HOM05D006008 ORTHO05D007334 6.2e-62 243.8 251 54.2
Glyma.06G061000 Glycine max HOM05D006008 ORTHO05D007334 1.8e-61 242.3 247 53.4
PGR142G1849 Punica granatum HOM05D006008 ORTHO05D007334 1.8e-61 242.3 258 55.0
PGSC0003DMG400027232 Solanum tuberosum HOM05D006008 ORTHO05D007334 4.0e-61 241.1 187 67.4
CSS0046362 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.2e-60 239.6 205 63.9
Sopen04g007490 Solanum pennellii HOM05D006008 ORTHO05D007334 2.6e-60 238.4 178 69.1
CSS0002096 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.4e-60 238.0 231 59.3
CSS0018849 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.4e-60 238.0 206 65.5
MELO3C032315.2 Cucumis melo HOM05D006008 ORTHO05D007334 3.4e-60 238.0 199 60.8
ClCG05G016190 Citrullus lanatus HOM05D006008 ORTHO05D007334 4.4e-60 237.7 197 59.9
arahy.Tifrunner.gnm1.ann1.HZWF25 Arachis hypogaea HOM05D006008 ORTHO05D007334 5.8e-60 237.3 238 54.6
Ca_15782_v3 Cicer arietinum L. HOM05D006008 ORTHO05D007334 5.8e-60 237.3 263 51.7
CANSAT56G1562 Cannabis sativa HOM05D006008 ORTHO05D007334 1.7e-59 235.7 245 53.5
CANSAT21G0760 Cannabis sativa HOM05D006008 ORTHO05D007334 2.9e-59 235.0 227 56.4
TPR.G1871 Trifolium pratense HOM05D006008 ORTHO05D007334 3.7e-59 234.6 263 51.3
arahy.Tifrunner.gnm1.ann1.E59C1E Arachis hypogaea HOM05D006008 ORTHO05D007334 4.9e-59 234.2 239 54.8
PSO384G1678 Papaver somniferum HOM05D006008 ORTHO05D007334 8.3e-59 233.4 237 54.9
MD08G1055800 Malus domestica HOM05D006008 ORTHO05D007334 1.1e-58 233.0 226 56.6
CANSAT80G2648 Cannabis sativa HOM05D006008 ORTHO05D007334 4.1e-58 231.1 224 57.1
Lj1g0008194 Lotus japonicus HOM05D006008 ORTHO05D007334 4.1e-58 231.1 261 49.8
AUR62041936 Chenopodium quinoa HOM05D006008 ORTHO05D007334 5.4e-58 230.7 212 56.1
Psat5g033520 Pisum sativum HOM05D006008 ORTHO05D007334 5.4e-58 230.7 258 50.0
CAN.G676.42 Capsicum annuum HOM05D006008 ORTHO05D007334 7.0e-58 230.3 178 66.3
FAN27G1628 Fragaria x ananassa HOM05D006008 ORTHO05D007334 7.0e-58 230.3 173 65.3
FAN20G2406 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.2e-57 229.6 173 65.3
QL02p018792 Quercus lobata HOM05D006008 ORTHO05D007334 2.1e-57 228.8 165 70.3
CSS0030467 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 3.5e-57 228.0 195 63.6
CANSAT21G2303 Cannabis sativa HOM05D006008 ORTHO05D007334 3.5e-57 228.0 225 56.0
CANSAT80G0905 Cannabis sativa HOM05D006008 ORTHO05D007334 6.0e-57 227.3 249 51.4
Ah.04g163370 Amaranthus hybridus HOM05D002153 ORTHO05D002137 1.0e-56 226.5 225 54.2
ATR0580G290 Amborella trichopoda HOM05D006008 ORTHO05D007334 1.3e-56 226.1 232 54.7
Lalb_Chr23g0268201 Lupinus albus HOM05D006008 ORTHO05D007334 1.3e-56 226.1 214 56.1
FvH4_2g41180 Fragaria vesca HOM05D006008 ORTHO05D007334 3.9e-56 224.6 169 64.5
Medtr3g105900 Medicago truncatula HOM05D006008 ORTHO05D007334 8.6e-56 223.4 259 48.6
Sed0007713 Sechium edule HOM05D006008 ORTHO05D007334 1.5e-55 222.6 200 56.5
Aqoxy7G02519 Aquilegia oxysepala HOM05D006008 ORTHO05D007334 3.3e-55 221.5 242 53.3
CANSAT54G0183 Cannabis sativa HOM05D006008 ORTHO05D007334 3.3e-55 221.5 263 50.2
Cc08_g07210 Coffea canephora HOM05D006008 ORTHO05D007334 2.1e-54 218.8 217 57.6
FAN15G1576 Fragaria x ananassa HOM05D006008 ORTHO05D007334 2.8e-54 218.4 173 61.8
BraA03t15143Z Brassica rapa HOM05D006008 ORTHO05D007334 8.1e-54 216.9 241 52.7
arahy.Tifrunner.gnm1.ann1.6M8E1A Arachis hypogaea HOM05D006008 ORTHO05D007334 1.8e-53 215.7 217 53.9
THA.LOC104803618 Tarenaya hassleriana HOM05D006008 ORTHO05D007334 2.3e-53 215.3 256 48.0
arahy.Tifrunner.gnm1.ann1.83E5X5 Arachis hypogaea HOM05D006008 ORTHO05D007334 3.7e-51 208.0 229 52.4
GSVIVG01035975001 Vitis vinifera HOM05D006008 ORTHO05D007334 6.4e-51 207.2 200 57.0
Oeu001622.3 Olea europaea HOM05D006008 ORTHO05D007334 1.9e-50 205.7 712 82.4
Prupe.1G394600 Prunus persica HOM05D006008 ORTHO05D007334 4.6e-49 201.1 217 52.5
Carub.0007s0870 Capsella rubella HOM05D006008 ORTHO05D007334 9.5e-47 193.4 213 52.6
Nitab4.5_0001663g0180 Nicotiana tabacum HOM05D006008 ORTHO05D007334 1.6e-46 192.6 129 75.2
A03p61020 Brassica napus HOM05D006008 ORTHO05D007334 2.4e-45 188.7 218 51.4
Aa31LG2G18380 Aethionema arabicum HOM05D006008 ORTHO05D007334 4.0e-45 188.0 232 47.0
CSS0013958 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 5.2e-45 187.6 139 70.5
BcaNung01494 Brassica carinata HOM05D006008 ORTHO05D007334 9.9e-44 183.3 221 50.2
HanXRQChr09g0270581 Helianthus annuus HOM05D006008 ORTHO05D007334 1.4e-42 179.5 178 53.4
CARHR239780 Cardamine hirsuta HOM05D006008 ORTHO05D007334 2.4e-42 178.7 222 50.9
Thhalv10024264m.g Eutrema salsugineum HOM05D006008 ORTHO05D007334 2.4e-42 178.7 214 48.6
CiPaw.08G005700 Carya illinoinensis HOM05D006008 ORTHO05D007334 5.4e-42 177.6 120 72.5
AL7G20130 Arabidopsis lyrata HOM05D006008 ORTHO05D007334 7.1e-42 177.2 214 49.1
C07p58920 Brassica napus HOM05D006008 ORTHO05D007334 1.2e-41 176.4 216 48.6
BolC7t46339H Brassica oleracea HOM05D006008 ORTHO05D007334 1.2e-41 176.4 216 48.6
Nn7g36097 Nelumbo nucifera HOM05D006008 ORTHO05D007334 7.8e-41 173.7 181 53.0
Ciclev10007356m.g Citrus clementina HOM05D006008 ORTHO05D007334 1.0e-40 173.3 116 74.1
CSS0039067 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 1.3e-40 172.9 188 56.4
EL10Ac4g08536 Beta vulgaris HOM05D006008 ORTHO05D007334 1.7e-40 172.6 173 52.0
CDE02G3851 Ceratophyllum demersum HOM05D006008 ORTHO05D007334 4.3e-39 167.9 254 41.3
Sp7g29660 Schrenkiella parvula HOM05D006008 ORTHO05D007334 1.4e-37 162.9 225 47.1
BcaC09g51977 Brassica carinata HOM05D006008 ORTHO05D007334 1.8e-37 162.5 220 45.9
AT4G31850 Arabidopsis thaliana HOM05D006008 ORTHO05D007334 6.9e-37 160.6 213 48.4
MSTRG.11782 Avicennia marina HOM05D006008 ORTHO05D007334 6.9e-37 160.6 178 51.1
Eucgr.C01897 Eucalyptus grandis HOM05D006008 ORTHO05D007334 6.9e-37 160.6 108 72.2
MBI15_g18236_MAGBIO Magnolia biondii HOM05D006008 ORTHO05D007334 1.5e-36 159.5 195 48.2
C01p07070 Brassica napus HOM05D006008 ORTHO05D007334 4.4e-36 157.9 217 45.6
A01p06430 Brassica napus HOM05D006008 ORTHO05D007334 1.7e-35 156.0 223 45.7
BraA01t00604Z Brassica rapa HOM05D006008 ORTHO05D007334 3.8e-35 154.8 221 44.8
CSS0031354 Camellia sinensis var. sinensis HOM05D006008 ORTHO05D007334 2.1e-33 149.1 129 54.3
Nn7g37618 Nelumbo nucifera HOM05D006008 ORTHO05D007334 1.3e-30 139.8 149 51.0
Zm00001eb393290 Zea mays HOM05D006008 ORTHO05D007334 1.2e-28 133.3 138 44.9
ATR0180G020 Amborella trichopoda HOM05D006008 ORTHO05D007334 1.3e-27 129.8 189 42.9
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 2.2e-27 129.0 128 48.4
COL.COLO4_18956 Corchorus olitorius HOM05D006008 ORTHO05D007334 1.4e-26 126.3 155 40.0
BolC1t00699H Brassica oleracea HOM05D006008 ORTHO05D007334 4.2e-26 124.8 219 42.0
AUR62041257 Chenopodium quinoa HOM05D006008 ORTHO05D007334 1.0e-24 120.2 124 52.4
SEGI_41266 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 1.0e-24 120.2 176 40.3
FAN20G1003 Fragaria x ananassa HOM05D006008 ORTHO05D007334 1.8e-24 119.4 155 41.3
Glyma.04G060500 Glycine max HOM05D006008 ORTHO05D007334 1.6e-22 112.8 158 37.3
CANSAT21G2219 Cannabis sativa HOM05D006008 ORTHO05D007334 4.8e-22 111.3 141 51.1
CsaV3_4G036480 Cucumis sativus L. HOM05D006008 ORTHO05D007334 8.1e-22 110.5 151 36.4
Lalb_Chr23g0268191 Lupinus albus HOM05D006008 ORTHO05D007334 5.3e-21 107.8 152 37.5
Nn7g36096 Nelumbo nucifera HOM05D006008 ORTHO05D007334 1.3e-19 103.2 152 34.9
BcaNung03118 Brassica carinata HOM05D006008 ORTHO05D007334 4.9e-19 101.3 173 33.5
SEGI_02316 Sequoiadendron giganteum HOM05D006008 ORTHO05D007334 1.4e-18 99.8 131 42.7
BcaNung03117 Brassica carinata HOM05D006008 ORTHO05D007334 1.6e-14 86.3 152 44.1
QL04p089735 Quercus lobata HOM05D022192 ORTHO05D009908 2.2e-11 75.9 46 82.6
GSVIVG01019040001 Vitis vinifera HOM05D006999 ORTHO05D008936 4.3e-07 61.6 209 22.5
THA.LOC104807228 Tarenaya hassleriana HOM05D003056 ORTHO05D003422 2.2e-06 59.3 154 28.6


User provided reference genes

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