Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 2.1e-109 399.1 204 100.0
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 6.8e-76 287.7 201 69.2
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 2.4e-73 279.3 199 71.9
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 2.1e-72 276.2 199 70.4
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 2.3e-71 272.7 191 71.2
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 2.3e-71 272.7 191 71.2
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 2.3e-71 272.7 200 67.5
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 3.0e-71 272.3 193 69.9
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 5.6e-70 268.1 196 67.9
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 7.3e-70 267.7 198 68.7
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 2.1e-69 266.2 202 68.3
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 4.8e-69 265.0 198 68.2
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 1.4e-68 263.5 197 66.5
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 3.1e-68 262.3 196 67.9
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 4.0e-68 261.9 197 66.0
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 6.9e-68 261.2 198 65.7
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 9.0e-68 260.8 190 68.9
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 1.5e-67 260.0 201 66.7
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 3.4e-67 258.8 190 69.5
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 3.4e-67 258.8 200 68.0
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 7.6e-67 257.7 175 73.1
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 1.3e-66 256.9 197 65.5
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 2.9e-66 255.8 200 67.5
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 1.1e-65 253.8 198 64.6
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 2.4e-65 252.7 201 63.2
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 4.2e-65 251.9 199 63.8
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 9.3e-65 250.8 193 65.8
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 9.3e-65 250.8 190 65.3
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 9.3e-65 250.8 196 63.3
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.2e-64 250.4 193 65.8
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 1.6e-64 250.0 196 64.3
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 2.7e-64 249.2 200 65.5
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 2.7e-64 249.2 191 67.0
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 3.5e-64 248.8 195 65.1
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 4.6e-64 248.4 200 63.0
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 7.9e-64 247.7 198 65.7
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 1.3e-63 246.9 198 66.2
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 1.3e-63 246.9 201 62.2
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 1.3e-63 246.9 190 65.3
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 1.3e-63 246.9 189 66.1
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 1.7e-63 246.5 196 60.2
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 3.9e-63 245.4 196 64.8
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 5.1e-63 245.0 198 62.6
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 6.6e-63 244.6 204 61.3
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 6.6e-63 244.6 199 62.8
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 8.7e-63 244.2 193 63.7
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.9e-62 243.0 211 60.7
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 2.5e-62 242.7 200 61.5
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 2.5e-62 242.7 196 60.2
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 2.5e-62 242.7 198 61.1
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 3.3e-62 242.3 199 63.3
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 3.3e-62 242.3 200 61.0
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 4.3e-62 241.9 200 60.5
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 7.4e-62 241.1 200 63.5
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 1.6e-61 240.0 202 61.9
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 1.6e-61 240.0 201 59.7
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 3.6e-61 238.8 197 61.9
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 4.8e-61 238.4 189 64.6
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 8.1e-61 237.7 201 59.2
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 8.1e-61 237.7 197 61.9
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 8.1e-61 237.7 202 61.4
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 1.1e-60 237.3 200 61.0
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 3.1e-60 235.7 189 63.5
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 3.1e-60 235.7 198 61.1
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 5.3e-60 235.0 200 61.0
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 3.4e-59 232.3 199 62.3
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 3.4e-59 232.3 202 60.9
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 7.6e-59 231.1 181 65.2
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 9.9e-59 230.7 202 59.9
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 3.8e-58 228.8 199 60.8
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 6.4e-58 228.0 196 60.2
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 8.4e-58 227.6 202 59.4
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 1.1e-57 227.3 199 58.8
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 1.6e-56 223.4 189 61.4
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 7.9e-56 221.1 189 60.8
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 7.9e-56 221.1 198 57.1
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 1.8e-55 219.9 196 58.7
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 2.3e-55 219.5 191 57.6
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 3.9e-55 218.8 191 57.6
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 2.5e-54 216.1 202 58.9
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 2.5e-54 216.1 204 56.4
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 2.1e-53 213.0 190 55.8
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 1.4e-52 210.3 190 55.3
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 1.4e-52 210.3 190 55.3
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 4.0e-52 208.8 191 56.5
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 9.0e-52 207.6 200 52.5
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 2.0e-51 206.5 189 53.4
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 2.6e-51 206.1 167 62.9
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 3.4e-51 205.7 190 54.2
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 3.4e-51 205.7 140 72.9
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 1.0e-50 204.1 204 53.9
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 2.9e-50 202.6 198 54.0
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 8.4e-50 201.1 192 54.2
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 8.4e-50 201.1 192 54.2
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 8.4e-50 201.1 192 55.2
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 7.1e-49 198.0 192 54.7
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 1.6e-48 196.8 223 47.5
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 1.6e-48 196.8 199 55.3
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 4.6e-48 195.3 190 51.1
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 7.9e-48 194.5 223 47.1
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 1.8e-47 193.4 189 50.3
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 2.3e-47 193.0 200 54.0
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 2.3e-47 193.0 190 52.1
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 1.9e-46 189.9 191 51.8
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 5.7e-46 188.3 190 52.1
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 2.1e-45 186.4 173 53.8
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 2.8e-45 186.0 127 70.9
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 4.8e-45 185.3 198 51.0
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 6.9e-44 181.4 190 51.1
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 1.5e-43 180.3 217 48.8
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 2.2e-42 176.4 205 48.3
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 7.2e-41 171.4 199 46.7
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 1.8e-39 166.8 199 47.7
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 1.3e-37 160.6 119 68.9
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 2.4e-36 156.4 119 66.4
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 9.0e-36 154.5 200 47.5
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 1.0e-34 151.0 195 45.6
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 6.5e-34 148.3 192 46.9
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 1.1e-30 137.5 197 39.6
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 1.1e-30 137.5 197 39.6
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 1.1e-30 137.5 83 80.7
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 7.4e-30 134.8 197 38.6
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 1.3e-29 134.0 197 38.6
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 4.1e-28 129.0 190 41.1
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 2.6e-27 126.3 204 39.2
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 5.9e-27 125.2 195 41.0
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 2.5e-25 119.8 202 38.1
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 9.4e-25 117.9 177 39.0
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 1.8e-23 113.6 189 37.0
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 2.3e-23 113.2 195 35.9
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 5.2e-23 112.1 178 36.5
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 4.8e-21 105.5 188 38.3
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 1.8e-20 103.6 182 33.0
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 1.9e-17 93.6 175 36.0
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 1.4e-12 77.4 95 40.0
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 1.8e-12 77.0 87 41.4
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 2.4e-12 76.6 69 58.0
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 1.2e-11 74.3 141 31.9
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 2.7e-11 73.2 72 58.3
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 3.5e-11 72.8 69 55.1
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 3.5e-11 72.8 69 55.1
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 7.7e-11 71.6 63 55.6
Sopen07g029020 Solanum pennellii HOM05D004800 ORTHO05D005842 7.7e-11 71.6 61 60.7
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 2.2e-10 70.1 127 36.2
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 1.6e-08 63.9 47 61.7
MCO11G643 Micromonas commoda HOM05D004800 ORTHO05D005842 1.8e-07 60.5 114 30.7
arahy.Tifrunner.gnm1.ann1.Y76JQK Arachis hypogaea HOM05D004800 ORTHO05D005842 1.5e-06 57.4 188 26.6
SMO356G0121 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 9.8e-06 54.7 172 27.3


User provided reference genes

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