Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_022834 Daucus carota HOM05D006992 ORTHO05D008752 6.5e-114 414.1 210 100.0
Actinidia33837 Actinidia chinensis HOM05D006992 ORTHO05D008752 7.5e-78 294.3 213 71.4
Lsat_1_v5_gn_2_67081 Lactuca sativa HOM05D006992 ORTHO05D008752 2.2e-77 292.7 204 73.5
Thecc.05G291400 Theobroma cacao HOM05D006992 ORTHO05D008752 7.1e-76 287.7 202 72.3
QL03p000176 Quercus lobata HOM05D006992 ORTHO05D008752 2.1e-75 286.2 206 70.4
vmacro19674 Vaccinium macrocarpon HOM05D006992 ORTHO05D008752 4.6e-75 285.0 217 69.1
Rhsim05G0148900 Rhododendron simsii HOM05D006992 ORTHO05D008752 6.0e-75 284.6 220 70.0
CSS0031345 Camellia sinensis var. sinensis HOM05D006992 ORTHO05D008752 7.8e-75 284.3 213 71.8
MELO3C015384.2 Cucumis melo HOM05D006992 ORTHO05D008752 1.3e-74 283.5 184 78.3
Oeu012474.1 Olea europaea HOM05D006992 ORTHO05D008752 1.7e-74 283.1 200 72.5
Eucgr.B01740 Eucalyptus grandis HOM05D006992 ORTHO05D008752 2.3e-74 282.7 201 70.6
Nn3g21348 Nelumbo nucifera HOM05D006992 ORTHO05D008752 6.6e-74 281.2 184 77.7
ClCG03G016340 Citrullus lanatus HOM05D006992 ORTHO05D008752 1.9e-73 279.6 184 77.2
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 1.9e-73 279.6 199 72.9
CsaV3_1G039620 Cucumis sativus L. HOM05D006992 ORTHO05D008752 1.9e-73 279.6 184 76.6
Cfa006481 Carpinus fangiana HOM05D006992 ORTHO05D008752 3.3e-73 278.9 188 75.5
CiPaw.08G178000 Carya illinoinensis HOM05D006992 ORTHO05D008752 3.3e-73 278.9 188 75.0
Atru.chr2.657 Acer truncatum HOM05D006992 ORTHO05D008752 4.3e-73 278.5 209 69.4
CiPaw.07G008900 Carya illinoinensis HOM05D006992 ORTHO05D008752 5.6e-73 278.1 204 70.1
MD12G1234200 Malus domestica HOM05D006992 ORTHO05D008752 7.3e-73 277.7 208 69.7
Glyma.19G241400 Glycine max HOM05D006992 ORTHO05D008752 3.6e-72 275.4 198 69.7
RcHm_v2.0_Chr3g0452481 Rosa chinensis HOM05D006992 ORTHO05D008752 3.6e-72 275.4 202 69.8
TWI36G0139 Tripterygium wilfordii HOM05D006992 ORTHO05D008752 8.1e-72 274.2 199 70.9
FAN09G1577 Fragaria x ananassa HOM05D000167 ORTHO05D000640 1.1e-71 273.9 204 71.1
HanXRQChr14g0445751 Helianthus annuus HOM05D006992 ORTHO05D008752 1.1e-71 273.9 185 72.4
TAR633G1762 Trochodendron aralioides HOM05D006992 ORTHO05D008752 1.1e-71 273.9 218 68.3
FAN14G0596 Fragaria x ananassa HOM05D006992 ORTHO05D008752 1.8e-71 273.1 202 69.8
FvH4_6g03930 Fragaria vesca HOM05D006992 ORTHO05D008752 3.1e-71 272.3 204 70.6
Prupe.6G337300 Prunus persica HOM05D006992 ORTHO05D008752 4.0e-71 271.9 205 69.8
Hund06999 Selenicereus undatus HOM05D006992 ORTHO05D008752 4.0e-71 271.9 207 69.1
FAN05G0877 Fragaria x ananassa HOM05D000167 ORTHO05D000640 6.8e-71 271.2 204 70.1
PGR083G1999 Punica granatum HOM05D006992 ORTHO05D008752 6.8e-71 271.2 193 71.5
ATR0706G207 Amborella trichopoda HOM05D006992 ORTHO05D008752 1.2e-70 270.4 183 73.2
Ciclev10002483m.g Citrus clementina HOM05D006992 ORTHO05D008752 1.5e-70 270.0 196 70.4
QL03p000513 Quercus lobata HOM05D006992 ORTHO05D008752 1.5e-70 270.0 229 62.9
AT3G04950 Arabidopsis thaliana HOM05D006992 ORTHO05D008752 2.6e-70 269.2 208 67.3
Sc09g0003710 Simmondsia chinensis HOM05D006992 ORTHO05D008752 2.6e-70 269.2 206 68.0
Solyc02g079130.3 Solanum lycopersicum HOM05D006992 ORTHO05D008752 2.6e-70 269.2 185 71.4
Sopen02g023930 Solanum pennellii HOM05D006992 ORTHO05D008752 3.4e-70 268.9 185 71.4
CAN.G424.13 Capsicum annuum HOM05D006992 ORTHO05D008752 4.4e-70 268.5 200 67.0
FAN05G5181 Fragaria x ananassa HOM05D006992 ORTHO05D008752 5.8e-70 268.1 203 69.5
CANSAT54G1892 Cannabis sativa HOM05D006992 ORTHO05D008752 9.9e-70 267.3 202 67.3
Gohir.A13G106100 Gossypium hirsutum HOM05D006992 ORTHO05D008752 9.9e-70 267.3 184 71.7
Gohir.D13G108900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 9.9e-70 267.3 202 67.3
Gorai.013G122400 Gossypium raimondii HOM05D006992 ORTHO05D008752 9.9e-70 267.3 202 67.8
THA.LOC104818652 Tarenaya hassleriana HOM05D006992 ORTHO05D008752 9.9e-70 267.3 193 71.0
PGSC0003DMG400022358 Solanum tuberosum HOM05D006992 ORTHO05D008752 1.3e-69 266.9 185 71.4
Sabra13G0033300 Salix brachista HOM05D006992 ORTHO05D008752 2.9e-69 265.8 207 67.6
AL3G15290 Arabidopsis lyrata HOM05D006992 ORTHO05D008752 3.7e-69 265.4 205 67.3
Sed0003148 Sechium edule HOM05D006992 ORTHO05D008752 4.9e-69 265.0 184 72.3
Nitab4.5_0001410g0140 Nicotiana tabacum HOM05D006992 ORTHO05D008752 8.3e-69 264.2 203 67.0
Nitab4.5_0004284g0080 Nicotiana tabacum HOM05D006992 ORTHO05D008752 8.3e-69 264.2 190 70.0
EL10Ac4g09207 Beta vulgaris HOM05D006992 ORTHO05D008752 2.4e-68 262.7 204 68.1
Phvul.006G097900 Phaseolus vulgaris HOM05D006992 ORTHO05D008752 2.4e-68 262.7 191 70.2
Manes.09G157800 Manihot esculenta HOM05D006992 ORTHO05D008752 3.2e-68 262.3 186 71.0
Carub.0003s0417 Capsella rubella HOM05D006992 ORTHO05D008752 4.1e-68 261.9 190 70.5
CARHR079260 Cardamine hirsuta HOM05D006992 ORTHO05D008752 5.4e-68 261.5 190 70.0
Cc02_g31290 Coffea canephora HOM05D006992 ORTHO05D008752 7.1e-68 261.2 171 76.0
CDE02G3150 Ceratophyllum demersum HOM05D006992 ORTHO05D008752 9.2e-68 260.8 184 69.6
Migut.N01946 Erythranthe guttata HOM05D006992 ORTHO05D008752 1.2e-67 260.4 187 69.5
FAN02G1922 Fragaria x ananassa HOM05D000167 ORTHO05D000640 2.1e-67 259.6 211 67.3
Lj1g0025869 Lotus japonicus HOM05D006992 ORTHO05D008752 2.1e-67 259.6 211 64.9
TPR.G6916 Trifolium pratense HOM05D006992 ORTHO05D008752 2.7e-67 259.2 201 67.2
Potri.013G034100 Populus trichocarpa HOM05D006992 ORTHO05D008752 6.0e-67 258.1 207 67.1
Thhalv10021439m.g Eutrema salsugineum HOM05D006992 ORTHO05D008752 1.0e-66 257.3 190 69.5
Gorai.007G286500 Gossypium raimondii HOM05D006992 ORTHO05D008752 1.3e-66 256.9 197 66.5
Sp3g03770 Schrenkiella parvula HOM05D006992 ORTHO05D008752 2.3e-66 256.1 191 68.1
A03p33950 Brassica napus HOM05D003164 ORTHO05D003575 3.0e-66 255.8 189 69.3
BraA03t12570Z Brassica rapa HOM05D006992 ORTHO05D008752 3.0e-66 255.8 190 69.5
GSVIVG01021889001 Vitis vinifera HOM05D006992 ORTHO05D008752 8.6e-66 254.2 171 74.9
PSO210G3204 Papaver somniferum HOM05D006992 ORTHO05D008752 1.1e-65 253.8 188 68.6
PSO832G0773 Papaver somniferum HOM05D006992 ORTHO05D008752 1.9e-65 253.1 197 66.5
ECA238G1326 Erigeron canadensis HOM05D006992 ORTHO05D008752 2.5e-65 252.7 172 75.0
BcaB04g19286 Brassica carinata HOM05D006992 ORTHO05D008752 4.3e-65 251.9 190 68.4
BolC3t16415H Brassica oleracea HOM05D006992 ORTHO05D008752 5.6e-65 251.5 189 68.8
BcaC01g04339 Brassica carinata HOM05D006992 ORTHO05D008752 7.3e-65 251.1 189 68.8
Ca_09397_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 7.3e-65 251.1 195 65.1
Peaxi162Scf00103g00035 Petunia axillaris HOM05D006992 ORTHO05D008752 1.2e-64 250.4 172 69.8
Psat0s2796g0040 Pisum sativum HOM05D006992 ORTHO05D008752 1.2e-64 250.4 193 65.3
SGA_v2.0_scaffold80G25908 Striga asiatica HOM05D006992 ORTHO05D008752 1.6e-64 250.0 208 62.0
Gohir.A11G256900 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.1e-64 249.6 197 65.0
Lj7A478T92 Lonicera japonica HOM05D006992 ORTHO05D008752 2.1e-64 249.6 266 54.5
C03p41330 Brassica napus HOM05D003164 ORTHO05D003575 2.8e-64 249.2 188 68.6
AUR62000954 Chenopodium quinoa HOM05D006992 ORTHO05D008752 8.1e-64 247.7 189 68.3
Lalb_Chr18g0045231 Lupinus albus HOM05D006992 ORTHO05D008752 1.4e-63 246.9 195 63.6
SalBow3G4063 Salvia bowleyana HOM05D006992 ORTHO05D008752 6.8e-63 244.6 204 62.3
arahy.Tifrunner.gnm1.ann1.ZZK2AU Arachis hypogaea HOM05D006992 ORTHO05D008752 5.8e-62 241.5 207 62.3
arahy.Tifrunner.gnm1.ann1.26USVU Arachis hypogaea HOM05D006992 ORTHO05D008752 7.6e-62 241.1 207 62.3
Aqoxy5G00680 Aquilegia oxysepala HOM05D006992 ORTHO05D008752 9.9e-62 240.7 208 61.5
Medtr7g114390 Medicago truncatula HOM05D006992 ORTHO05D008752 2.9e-61 239.2 199 58.8
Haze_04310 Corylus avellana HOM05D006992 ORTHO05D008752 1.4e-60 236.9 283 50.9
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 1.2e-59 233.8 139 82.0
Migut.N01944 Erythranthe guttata HOM05D006992 ORTHO05D008752 1.0e-58 230.7 188 62.2
Os06g0298500 Oryza sativa ssp. japonica HOM05D006992 ORTHO05D008752 5.6e-57 224.9 185 61.6
Zm00001eb381040 Zea mays HOM05D006992 ORTHO05D008752 2.4e-55 219.5 185 61.6
AUR62005014 Chenopodium quinoa HOM05D006992 ORTHO05D008752 3.4e-54 215.7 171 66.7
HPP92_017993 Vanilla planifolia HOM05D006992 ORTHO05D008752 5.4e-52 208.4 185 58.4
SEGI_08689 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 1.2e-51 207.2 182 58.2
HPP92_026697 Vanilla planifolia HOM05D006992 ORTHO05D008752 1.6e-51 206.8 185 58.4
unitig_746.g26840 Utricularia gibba HOM05D006992 ORTHO05D008752 2.7e-51 206.1 135 74.1
Glyma.03G244000 Glycine max HOM05D006992 ORTHO05D008752 3.0e-50 202.6 168 62.5
VMungo0540G1333 Vigna mungo HOM05D006992 ORTHO05D008752 1.1e-49 200.7 151 68.9
Gohir.D11G266700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 8.1e-48 194.5 159 61.6
Ca_30169_v3 Cicer arietinum L. HOM05D006992 ORTHO05D008752 4.5e-46 188.7 156 62.2
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 6.5e-37 158.3 92 85.9
PSO339G2351 Papaver somniferum HOM05D006992 ORTHO05D008752 1.9e-36 156.8 177 49.7
PSO210G4341 Papaver somniferum HOM05D006992 ORTHO05D008752 2.5e-36 156.4 177 50.8
PSO384G0024 Papaver somniferum HOM05D006992 ORTHO05D008752 6.0e-35 151.8 177 48.6
SEGI_13740 Sequoiadendron giganteum HOM05D006992 ORTHO05D008752 1.3e-32 144.1 164 50.6
FAN05G0951 Fragaria x ananassa HOM05D000167 ORTHO05D000640 3.1e-31 139.4 134 58.2
Gohir.D03G094700 Gossypium hirsutum HOM05D006992 ORTHO05D008752 2.6e-30 136.3 93 71.0
Gohir.D07G141600 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.0e-26 124.4 79 77.2
Gorai.001G169400 Gossypium raimondii HOM05D006992 ORTHO05D008752 2.3e-26 123.2 79 75.9
Gohir.D12G044200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 4.3e-25 119.0 79 73.4
Aa31LG5G15340 Aethionema arabicum HOM05D006992 ORTHO05D008752 1.3e-24 117.5 74 75.7
RcHm_v2.0_Chr3g0452521 Rosa chinensis HOM05D006992 ORTHO05D008752 5.0e-21 105.5 102 58.8
SMO361G0250 Selaginella moellendorffii HOM05D006992 ORTHO05D008752 4.3e-17 92.4 220 33.6
RcHm_v2.0_Chr1g0321781 Rosa chinensis HOM05D006992 ORTHO05D008752 9.7e-17 91.3 61 68.9
RcHm_v2.0_Chr6g0246461 Rosa chinensis HOM05D006992 ORTHO05D008752 2.8e-16 89.7 61 67.2
VMungo0331G0785 Vigna mungo HOM05D006992 ORTHO05D008752 4.8e-16 89.0 77 57.1
Gohir.D03G082200 Gossypium hirsutum HOM05D006992 ORTHO05D008752 1.5e-14 84.0 55 76.4
Gorai.010G111000 Gossypium raimondii HOM05D001408 ORTHO05D001312 6.7e-10 68.6 41 80.5
Sp3g03780 Schrenkiella parvula HOM05D000160 ORTHO05D000914 1.1e-09 67.8 36 83.3
Gohir.D06G096300 Gossypium hirsutum HOM05D001408 ORTHO05D001312 5.7e-09 65.5 41 75.6
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 5.7e-09 65.5 40 80.0
RcHm_v2.0_Chr3g0452531 Rosa chinensis HOM05D006992 ORTHO05D008752 9.7e-09 64.7 35 91.4
SGA_v2.0_scaffold243G44307 Striga asiatica HOM05D060893 ORTHO05D008752 1.1e-07 61.2 105 43.8


User provided reference genes

Program Settings