Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_022605 Daucus carota HOM05D007725 ORTHO05D009774 1.6e-194 682.9 460 100.0
Peaxi162Scf00955g00014 Petunia axillaris HOM05D007725 ORTHO05D009774 4.8e-85 319.3 437 60.6
Nitab4.5_0002517g0030 Nicotiana tabacum HOM05D007725 ORTHO05D009774 1.5e-83 314.3 447 59.5
PGSC0003DMG402029798 Solanum tuberosum HOM05D007725 ORTHO05D009774 2.6e-83 313.5 447 60.0
Sopen12g007550 Solanum pennellii HOM05D007725 ORTHO05D009774 5.9e-83 312.4 447 59.3
CSS0027076 Camellia sinensis var. sinensis HOM05D007725 ORTHO05D009774 1.0e-82 311.6 449 56.8
Lj1P886T16 Lonicera japonica HOM05D007725 ORTHO05D009774 1.0e-82 311.6 452 60.8
Solyc12g015650.3 Solanum lycopersicum HOM05D007725 ORTHO05D009774 1.1e-81 308.1 447 59.5
HanXRQChr11g0333971 Helianthus annuus HOM05D007725 ORTHO05D009774 9.1e-76 288.5 443 55.1
Nn1g07446 Nelumbo nucifera HOM05D007725 ORTHO05D009774 1.2e-75 288.1 437 57.9
Gohir.D11G287700 Gossypium hirsutum HOM05D007725 ORTHO05D009774 1.9e-73 280.8 434 51.4
Gohir.A11G277300 Gossypium hirsutum HOM05D007725 ORTHO05D009774 7.4e-70 268.9 434 50.0
Gorai.007G311000 Gossypium raimondii HOM05D007725 ORTHO05D009774 3.7e-69 266.5 434 47.2
Duzib170G0716 Durio zibethinus HOM05D007725 ORTHO05D009774 4.8e-69 266.2 433 54.5
Glyma.08G326100 Glycine max HOM05D007725 ORTHO05D009774 9.1e-68 261.9 438 52.3
VMungo0540G1375 Vigna mungo HOM05D007725 ORTHO05D009774 1.3e-66 258.1 438 51.4
Nitab4.5_0000163g0300 Nicotiana tabacum HOM05D007725 ORTHO05D009774 1.9e-65 254.2 447 54.8
Dinv10315 Davidia involucrata HOM05D007725 ORTHO05D009774 3.2e-65 253.4 453 53.4
GSVIVG01037783001 Vitis vinifera HOM05D007725 ORTHO05D009774 1.6e-64 251.1 440 53.2
Nn1g03245 Nelumbo nucifera HOM05D007725 ORTHO05D009774 3.6e-64 250.0 451 51.9
COL.COLO4_09791 Corchorus olitorius HOM05D007725 ORTHO05D009774 1.1e-62 245.0 438 52.1
Ciclev10008214m.g Citrus clementina HOM05D007725 ORTHO05D009774 9.7e-62 241.9 436 53.2
Medtr3g056580 Medicago truncatula HOM05D007725 ORTHO05D009774 1.7e-61 241.1 434 41.0
GSVIVG01037784001 Vitis vinifera HOM05D007725 ORTHO05D009774 8.2e-61 238.8 444 50.2
TPR.G1953 Trifolium pratense HOM05D007725 ORTHO05D009774 3.1e-60 236.9 435 36.3
Cc05_g14730 Coffea canephora HOM05D007725 ORTHO05D009774 9.1e-60 235.3 446 50.9
ClCG09G021110 Citrullus lanatus HOM05D007725 ORTHO05D009774 2.0e-59 234.2 449 50.1
MSTRG.15782 Avicennia marina HOM05D007725 ORTHO05D009774 5.9e-59 232.6 439 52.2
SGA_v2.0_scaffold168G38532 Striga asiatica HOM05D007725 ORTHO05D009774 5.0e-58 229.6 442 34.6
Hma1.2p1_2796F.1_g328670 Hydrangea macrophylla HOM05D007725 ORTHO05D009774 1.6e-56 224.6 452 49.1
TAR624G0507 Trochodendron aralioides HOM05D007725 ORTHO05D009774 8.0e-56 222.2 347 58.2
Cfa020227 Carpinus fangiana HOM05D007725 ORTHO05D009774 3.0e-55 220.3 450 49.8
Migut.M01753 Erythranthe guttata HOM05D007725 ORTHO05D009774 1.5e-54 218.0 450 50.2
Ca_26464_v3 Cicer arietinum L. HOM05D007725 ORTHO05D009774 8.2e-53 212.2 431 40.4
MELO3C024908.2 Cucumis melo HOM05D007725 ORTHO05D009774 9.1e-52 208.8 449 46.1
PSO478G1598 Papaver somniferum HOM05D007725 ORTHO05D009774 1.6e-51 208.0 446 47.5
CsaV3_7G018510 Cucumis sativus L. HOM05D007725 ORTHO05D009774 2.0e-51 207.6 433 49.9
Manes.03G138100 Manihot esculenta HOM05D007725 ORTHO05D009774 1.2e-48 198.4 440 50.9
Psat5g175640 Pisum sativum HOM05D007725 ORTHO05D009774 4.7e-48 196.4 353 54.1
Nn1g03425 Nelumbo nucifera HOM05D007725 ORTHO05D009774 8.0e-48 195.7 449 46.1
arahy.Tifrunner.gnm1.ann1.Q8DMES Arachis hypogaea HOM05D007725 ORTHO05D009774 2.0e-46 191.0 438 47.5
Phvul.006G053700 Phaseolus vulgaris HOM05D007725 ORTHO05D009774 2.0e-46 191.0 344 54.7
QL08p005480 Quercus lobata HOM05D007725 ORTHO05D009774 2.0e-46 191.0 449 48.6
arahy.Tifrunner.gnm1.ann1.TWJV4J Arachis hypogaea HOM05D007725 ORTHO05D009774 7.5e-46 189.1 438 43.8
Oeu005490.1 Olea europaea HOM05D007725 ORTHO05D009774 7.5e-46 189.1 205 51.7
arahy.Tifrunner.gnm1.ann1.LCTM2T Arachis hypogaea HOM05D007725 ORTHO05D009774 2.8e-45 187.2 438 43.6
PGR031G2940 Punica granatum HOM05D007725 ORTHO05D009774 3.7e-45 186.8 441 43.8
COL.COLO4_09793 Corchorus olitorius HOM05D007725 ORTHO05D009774 4.8e-45 186.4 166 59.6
Sed0002917 Sechium edule HOM05D007725 ORTHO05D009774 1.1e-44 185.3 449 45.7
Cpa.g.sc12.189 Carica papaya HOM05D007725 ORTHO05D009774 2.7e-43 180.6 433 44.6
SalBow8G2031 Salvia bowleyana HOM05D007725 ORTHO05D009774 5.9e-43 179.5 418 52.4
EL10Ac4g07611 Beta vulgaris HOM05D007725 ORTHO05D009774 7.7e-43 179.1 349 52.7
Haze_09790 Corylus avellana HOM05D007725 ORTHO05D009774 1.3e-42 178.3 449 46.1
AT3G20170 Arabidopsis thaliana HOM05D007725 ORTHO05D009774 1.0e-39 168.7 437 46.2
SEGI_22467 Sequoiadendron giganteum HOM05D007725 ORTHO05D009774 6.8e-39 166.0 440 44.5
Carub.0003s2010 Capsella rubella HOM05D007725 ORTHO05D009774 7.5e-38 162.5 438 45.7
Thhalv10020642m.g Eutrema salsugineum HOM05D007725 ORTHO05D009774 2.2e-37 161.0 447 45.4
AL3G33870 Arabidopsis lyrata HOM05D007725 ORTHO05D009774 6.3e-37 159.5 446 42.6
Lj6g0016094 Lotus japonicus HOM05D007725 ORTHO05D009774 6.3e-37 159.5 437 45.1
Sp3g18200 Schrenkiella parvula HOM05D007725 ORTHO05D009774 6.3e-37 159.5 447 45.2
CARHR095760 Cardamine hirsuta HOM05D007725 ORTHO05D009774 5.4e-36 156.4 446 42.8
Lj6g0024671 Lotus japonicus HOM05D007725 ORTHO05D009774 9.2e-36 155.6 436 44.5
AUR62040655 Chenopodium quinoa HOM05D007725 ORTHO05D009774 1.6e-35 154.8 340 52.1
Aa31LG8G7000 Aethionema arabicum HOM05D007725 ORTHO05D009774 2.0e-35 154.5 438 45.7
BolC5t33143H Brassica oleracea HOM05D007725 ORTHO05D009774 3.5e-35 153.7 436 45.2
C05p44210 Brassica napus HOM05D007725 ORTHO05D009774 5.9e-35 152.9 436 45.2
AUR62017062 Chenopodium quinoa HOM05D007725 ORTHO05D009774 1.3e-34 151.8 340 50.9
ATR1149G149 Amborella trichopoda HOM05D007725 ORTHO05D009774 5.0e-34 149.8 337 52.5
A05p28800 Brassica napus HOM05D007725 ORTHO05D009774 8.6e-34 149.1 436 44.7
BcaB04g19094 Brassica carinata HOM05D007725 ORTHO05D009774 1.9e-33 147.9 451 43.9
BolC3t17381H Brassica oleracea HOM05D007725 ORTHO05D009774 4.3e-33 146.7 450 42.9
A03p41610 Brassica napus HOM05D007725 ORTHO05D009774 2.1e-32 144.4 450 42.2
BraA03t13314Z Brassica rapa HOM05D007725 ORTHO05D009774 2.1e-32 144.4 450 42.2
C03p50970 Brassica napus HOM05D007725 ORTHO05D009774 4.7e-32 143.3 450 42.4
Lj6g0003901 Lotus japonicus HOM05D007725 ORTHO05D009774 1.5e-30 138.3 409 44.5
Lj2g0017250 Lotus japonicus HOM05D007725 ORTHO05D009774 7.5e-30 136.0 435 28.3
Thecc.07G022000 Theobroma cacao HOM05D007725 ORTHO05D009774 9.2e-28 129.0 173 43.9
HPP92_006089 Vanilla planifolia HOM05D007725 ORTHO05D009774 6.4e-21 106.3 368 46.2
BraA05t21757Z Brassica rapa HOM05D007725 ORTHO05D009774 1.0e-18 99.0 200 33.5
CDE04G3331 Ceratophyllum demersum HOM05D000050 ORTHO05D009774 1.4e-15 88.6 156 35.3
TPR.G1910 Trifolium pratense HOM05D007725 ORTHO05D009774 8.9e-15 85.9 87 54.0
HanXRQChr06g0184751 Helianthus annuus HOM05D007725 ORTHO05D009774 1.2e-14 85.5 137 37.2
BcaC01g03576 Brassica carinata HOM05D007725 ORTHO05D009774 2.7e-11 74.3 142 36.6
BcaC02g11617 Brassica carinata HOM05D007725 ORTHO05D009774 6.8e-07 59.7 49 57.1
Ciclev10014242m.g Citrus clementina HOM05D006947 ORTHO05D008818 5.8e-06 56.6 117 34.2


User provided reference genes

Program Settings