Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_022556 Daucus carota HOM05D007003 ORTHO05D008499 8.6e-165 583.6 290 100.0
Lj1P870T43 Lonicera japonica HOM05D007003 ORTHO05D008499 1.6e-94 350.1 283 64.7
Actinidia36944 Actinidia chinensis HOM05D001273 ORTHO05D000023 3.4e-89 332.4 291 63.2
Migut.M01775 Erythranthe guttata HOM05D007003 ORTHO05D008499 3.4e-89 332.4 294 58.5
CSS0047719 Camellia sinensis var. sinensis HOM05D007003 ORTHO05D008499 1.7e-88 330.1 354 52.5
Nitab4.5_0001913g0010 Nicotiana tabacum HOM05D007003 ORTHO05D008499 2.2e-88 329.7 295 61.4
vmacro11731 Vaccinium macrocarpon HOM05D007003 ORTHO05D008499 6.5e-88 328.2 303 58.1
Oeu007586.1 Olea europaea HOM05D007003 ORTHO05D008499 1.9e-87 326.6 294 60.5
Sopen07g032680 Solanum pennellii HOM05D007003 ORTHO05D008499 7.2e-87 324.7 305 58.7
Solyc07g064480.1 Solanum lycopersicum HOM05D007003 ORTHO05D008499 2.7e-86 322.8 310 58.4
Nitab4.5_0003812g0060 Nicotiana tabacum HOM05D007003 ORTHO05D008499 1.0e-85 320.9 286 61.2
PGSC0003DMG400042605 Solanum tuberosum HOM05D007003 ORTHO05D008499 1.0e-85 320.9 303 60.1
Cc05_g13800 Coffea canephora HOM05D007003 ORTHO05D008499 5.3e-82 308.5 294 59.9
Dinv40746 Davidia involucrata HOM05D007003 ORTHO05D008499 5.3e-82 308.5 349 51.0
Ciclev10008359m.g Citrus clementina HOM05D007003 ORTHO05D008499 9.1e-82 307.8 388 47.9
CsaV3_3G044430 Cucumis sativus L. HOM05D007003 ORTHO05D008499 7.7e-81 304.7 320 50.9
Manes.03G124400 Manihot esculenta HOM05D007003 ORTHO05D008499 1.7e-80 303.5 322 52.5
Rhsim06G0216400 Rhododendron simsii HOM05D000561 ORTHO05D000514 2.9e-80 302.8 299 57.2
Lalb_Chr04g0248491 Lupinus albus HOM05D007003 ORTHO05D008499 3.8e-80 302.4 362 48.3
Medtr5g092280 Medicago truncatula HOM05D007003 ORTHO05D008499 1.1e-79 300.8 346 50.0
Peaxi162Scf00964g00113 Petunia axillaris HOM05D007003 ORTHO05D008499 1.1e-79 300.8 321 53.6
MELO3C018208.2 Cucumis melo HOM05D007003 ORTHO05D008499 1.9e-79 300.1 320 50.0
Atru.chr2.3373 Acer truncatum HOM05D007003 ORTHO05D008499 1.2e-78 297.4 375 48.3
GSVIVG01037627001 Vitis vinifera HOM05D007003 ORTHO05D008499 1.6e-78 297.0 355 49.3
Gohir.A04G018400 Gossypium hirsutum HOM05D007003 ORTHO05D008499 4.0e-77 292.4 341 49.0
Lsat_1_v5_gn_5_6061 Lactuca sativa HOM05D007003 ORTHO05D008499 5.2e-77 292.0 291 55.0
Potri.001G423900 Populus trichocarpa HOM05D007003 ORTHO05D008499 1.5e-76 290.4 315 52.4
Gohir.D05G367600 Gossypium hirsutum HOM05D007003 ORTHO05D008499 2.0e-76 290.0 340 47.6
Sabra16G0288900 Salix brachista HOM05D007003 ORTHO05D008499 2.0e-76 290.0 315 52.4
Gorai.009G435200 Gossypium raimondii HOM05D007003 ORTHO05D008499 2.6e-76 289.7 340 47.6
TPR.G22251 Trifolium pratense HOM05D007003 ORTHO05D008499 2.6e-76 289.7 318 52.2
TWI39G0907 Tripterygium wilfordii HOM05D007003 ORTHO05D008499 6.3e-75 285.0 285 56.8
VMungo0647G1301 Vigna mungo HOM05D007003 ORTHO05D008499 6.3e-75 285.0 377 45.6
Sed0008518 Sechium edule HOM05D007003 ORTHO05D008499 1.1e-74 284.3 308 49.7
PSO675G0160 Papaver somniferum HOM05D007003 ORTHO05D008499 1.8e-74 283.5 290 51.4
ECA246G4814 Erigeron canadensis HOM05D001273 ORTHO05D000023 2.4e-74 283.1 315 50.5
Phvul.008G266200 Phaseolus vulgaris HOM05D007003 ORTHO05D008499 3.1e-74 282.7 376 45.5
CiPaw.12G128900 Carya illinoinensis HOM05D007003 ORTHO05D008499 2.2e-72 276.6 363 45.7
Glyma.14G024800 Glycine max HOM05D007003 ORTHO05D008499 5.0e-72 275.4 376 46.0
Eucgr.F00779 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.5e-71 273.1 354 46.0
TAR627G0793 Trochodendron aralioides HOM05D007003 ORTHO05D008499 2.5e-71 273.1 402 43.0
BolC2t07756H Brassica oleracea HOM05D001404 ORTHO05D002309 9.4e-71 271.2 305 52.8
A02p10000 Brassica napus HOM05D001404 ORTHO05D008499 1.6e-70 270.4 305 52.8
C02p16580 Brassica napus HOM05D001404 ORTHO05D002309 1.6e-70 270.4 305 52.8
BraA02t06064Z Brassica rapa HOM05D001404 ORTHO05D002309 1.6e-70 270.4 305 52.8
BcaB05g22167 Brassica carinata HOM05D007003 ORTHO05D008499 3.6e-70 269.2 315 50.8
Thecc.07G042400 Theobroma cacao HOM05D007003 ORTHO05D008499 4.7e-70 268.9 424 41.3
LjContig00272g0003747 Lotus japonicus HOM05D007003 ORTHO05D008499 8.0e-70 268.1 373 44.8
RcHm_v2.0_Chr5g0039141 Rosa chinensis HOM05D007003 ORTHO05D008499 3.0e-69 266.2 425 41.2
Prupe.4G211300 Prunus persica HOM05D007003 ORTHO05D008499 8.8e-69 264.6 423 42.3
Nn1g03566 Nelumbo nucifera HOM05D007003 ORTHO05D008499 1.5e-68 263.8 440 41.1
unitig_578.g16000 Utricularia gibba HOM05D007003 ORTHO05D008499 1.5e-68 263.8 305 49.2
Cpa.g.sc97.17 Carica papaya HOM05D007003 ORTHO05D008499 2.0e-68 263.5 437 39.1
arahy.Tifrunner.gnm1.ann1.422Z41 Arachis hypogaea HOM05D007003 ORTHO05D008499 2.6e-68 263.1 411 41.1
Psat2g013360 Pisum sativum HOM05D007003 ORTHO05D008499 5.7e-68 261.9 309 48.5
Ah.04g165820 Amaranthus hybridus HOM05D007003 ORTHO05D008499 7.5e-68 261.5 365 43.3
MD11G1220900 Malus domestica HOM05D001273 ORTHO05D008499 7.5e-68 261.5 420 41.0
arahy.Tifrunner.gnm1.ann1.6A6QM9 Arachis hypogaea HOM05D007003 ORTHO05D008499 1.3e-67 260.8 420 40.5
AUR62020466 Chenopodium quinoa HOM05D007003 ORTHO05D008499 8.3e-67 258.1 381 41.7
FvH4_3g22471 Fragaria vesca HOM05D007003 ORTHO05D008499 8.3e-67 258.1 420 41.9
Eucgr.F00790 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.4e-66 257.3 326 46.3
PGR119G0071 Punica granatum HOM05D007003 ORTHO05D008499 7.0e-66 255.0 371 43.1
CARHR268220 Cardamine hirsuta HOM05D007003 ORTHO05D008499 1.2e-65 254.2 355 44.5
Thhalv10013739m.g Eutrema salsugineum HOM05D007003 ORTHO05D008499 2.0e-65 253.4 358 44.4
EL10Ac4g07838 Beta vulgaris HOM05D007003 ORTHO05D008499 2.7e-65 253.1 372 41.9
FAN21G0080 Fragaria x ananassa HOM05D007003 ORTHO05D008499 3.5e-65 252.7 419 40.6
Sp6g16850 Schrenkiella parvula HOM05D007003 ORTHO05D008499 4.5e-65 252.3 359 44.6
AT5G54880 Arabidopsis thaliana HOM05D007003 ORTHO05D008499 5.9e-65 251.9 360 43.6
THA.LOC104817663 Tarenaya hassleriana HOM05D007003 ORTHO05D008499 1.0e-64 251.1 373 41.8
SGA_v2.0_scaffold424G51477 Striga asiatica HOM05D007003 ORTHO05D008499 3.8e-64 249.2 328 47.3
Eucgr.F00955 Eucalyptus grandis HOM05D007003 ORTHO05D008499 6.5e-64 248.4 329 43.8
Eucgr.F00879 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.1e-63 247.7 306 48.0
Haze_09661 Corylus avellana HOM05D007003 ORTHO05D008499 1.5e-63 247.3 437 39.8
AL8G30340 Arabidopsis lyrata HOM05D007003 ORTHO05D008499 1.9e-63 246.9 363 42.7
CANSAT21G1622 Cannabis sativa HOM05D007003 ORTHO05D008499 1.9e-63 246.9 434 38.2
Cfa020358 Carpinus fangiana HOM05D007003 ORTHO05D008499 1.9e-63 246.9 429 39.9
AUR62015746 Chenopodium quinoa HOM05D007003 ORTHO05D008499 2.5e-63 246.5 381 40.4
Duzib213G0769 Durio zibethinus HOM05D007003 ORTHO05D008499 1.8e-61 240.4 481 36.6
QL03p009927 Quercus lobata HOM05D007003 ORTHO05D008499 2.3e-61 240.0 452 38.1
QL08p011145 Quercus lobata HOM05D007003 ORTHO05D008499 3.0e-61 239.6 453 39.1
Aqoxy7G03837 Aquilegia oxysepala HOM05D007003 ORTHO05D008499 6.8e-61 238.4 386 40.4
Cfa020360 Carpinus fangiana HOM05D007003 ORTHO05D008499 2.6e-60 236.5 416 41.1
Aa31LG3G10810 Aethionema arabicum HOM05D007003 ORTHO05D008499 3.4e-60 236.1 350 40.9
HPP92_012320 Vanilla planifolia HOM05D007003 ORTHO05D008499 2.2e-59 233.4 356 42.1
Eucgr.F00922 Eucalyptus grandis HOM05D007003 ORTHO05D008499 2.8e-59 233.0 322 43.8
HPP92_012396 Vanilla planifolia HOM05D007003 ORTHO05D008499 3.7e-59 232.6 356 42.4
SalBow8G3099 Salvia bowleyana HOM05D007003 ORTHO05D008499 2.4e-58 229.9 187 65.8
ATR0752G213 Amborella trichopoda HOM05D007003 ORTHO05D008499 3.1e-58 229.6 427 36.8
Eucgr.L01323 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.0e-56 224.6 312 43.6
Actinidia05100 Actinidia chinensis HOM05D007003 ORTHO05D008499 1.2e-54 217.6 184 63.6
Ca_26481_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 3.4e-52 209.5 200 54.5
MBI02_g22102_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 2.7e-49 199.9 191 55.5
SEGI_36701 Sequoiadendron giganteum HOM05D007003 ORTHO05D008499 2.7e-49 199.9 286 41.3
Eucgr.F00913 Eucalyptus grandis HOM05D007003 ORTHO05D008499 6.6e-48 195.3 334 39.5
Carub.0008s1518 Capsella rubella HOM05D007003 ORTHO05D008499 1.6e-46 190.7 188 54.3
TPR.G17434 Trifolium pratense HOM05D007003 ORTHO05D008499 3.6e-46 189.5 189 50.8
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 6.2e-46 188.7 169 60.4
Zm00001eb219850 Zea mays HOM05D007003 ORTHO05D008499 8.0e-46 188.3 474 30.2
Os03g0568600 Oryza sativa ssp. japonica HOM05D007003 ORTHO05D008499 1.4e-45 187.6 475 30.3
CDE11G0477 Ceratophyllum demersum HOM05D007003 ORTHO05D008499 3.1e-45 186.4 234 45.3
Eucgr.F00897 Eucalyptus grandis HOM05D007003 ORTHO05D008499 1.2e-44 184.5 297 40.4
Sc16g0006140 Simmondsia chinensis HOM05D007003 ORTHO05D008499 1.3e-43 181.0 362 33.7
Eucgr.F00928 Eucalyptus grandis HOM05D007003 ORTHO05D008499 3.7e-43 179.5 305 38.0
BcaC03g14277 Brassica carinata HOM05D007003 ORTHO05D008499 3.5e-41 172.9 149 61.7
AagrBONN_evm.TU.Sc2ySwM_362.2079 Anthoceros agrestis HOM05D007003 ORTHO05D008499 3.3e-39 166.4 307 37.5
Zm00001eb026290 Zea mays HOM05D007003 ORTHO05D008499 7.3e-39 165.2 148 54.1
Pp3c4_4830 Physcomitrium patens HOM05D007003 ORTHO05D008499 6.4e-35 152.1 279 36.9
Ca_03331_v3 Cicer arietinum L. HOM05D007003 ORTHO05D008499 6.6e-32 142.1 93 69.9
Mapoly0032s0131 Marchantia polymorpha HOM05D007003 ORTHO05D008499 2.1e-30 137.1 313 34.2
TPR.G22255 Trifolium pratense HOM05D005190 ORTHO05D006183 3.1e-29 133.3 246 37.0
CAN.G337.122 Capsicum annuum HOM05D007003 ORTHO05D008499 2.4e-26 123.6 77 77.9
SMO339G0013 Selaginella moellendorffii HOM05D007003 ORTHO05D008499 3.0e-24 116.7 287 31.4
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 6.6e-24 115.5 89 61.8
CAN.G337.121 Capsicum annuum HOM05D007003 ORTHO05D008499 1.4e-21 107.8 75 69.3
TPR.G1180 Trifolium pratense HOM05D007003 ORTHO05D008499 1.8e-21 107.5 77 67.5
MD03G1204100 Malus domestica HOM05D007003 ORTHO05D008499 8.9e-21 105.1 76 67.1
TPR.G1231 Trifolium pratense HOM05D007003 ORTHO05D008499 2.6e-20 103.6 102 55.9
ClCG05G014280 Citrullus lanatus HOM05D007003 ORTHO05D008499 1.1e-18 98.2 243 29.2
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 2.1e-17 94.0 71 59.2
Actinidia05099 Actinidia chinensis HOM05D001273 ORTHO05D000023 4.0e-13 79.7 58 63.8
Medtr0590s0020 Medicago truncatula HOM05D007003 ORTHO05D263438 8.4e-11 72.0 166 29.5


User provided reference genes

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