Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_022352 Daucus carota HOM05D005646 ORTHO05D006828 5.1e-282 973.8 503 100.0
Hma1.2p1_0902F.1_g234850 Hydrangea macrophylla HOM05D005646 ORTHO05D006828 5.0e-128 462.2 544 52.0
Dinv32048 Davidia involucrata HOM05D005646 ORTHO05D006828 2.3e-125 453.4 532 51.9
QL04p013757 Quercus lobata HOM05D005646 ORTHO05D006828 1.3e-120 437.6 485 52.4
CiPaw.13G011000 Carya illinoinensis HOM05D005646 ORTHO05D006828 5.0e-120 435.6 482 53.5
PGR142G3067 Punica granatum HOM05D005646 ORTHO05D006828 6.5e-120 435.3 462 53.7
Duzib128G0351 Durio zibethinus HOM05D005646 ORTHO05D006828 2.1e-118 430.3 405 58.0
CSS0034883 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 1.3e-115 421.0 482 51.5
Cc02_g29140 Coffea canephora HOM05D005646 ORTHO05D006828 1.7e-115 420.6 486 51.4
CSS0050243 Camellia sinensis var. sinensis HOM05D005646 ORTHO05D006828 8.3e-115 418.3 481 51.4
SalBow5G2332 Salvia bowleyana HOM05D005646 ORTHO05D006828 8.3e-115 418.3 494 50.6
GSVIVG01000839001 Vitis vinifera HOM05D005646 ORTHO05D006828 3.5e-113 412.9 485 50.1
Gorai.011G293500 Gossypium raimondii HOM05D005646 ORTHO05D006828 4.5e-113 412.5 505 49.7
Manes.11G002900 Manihot esculenta HOM05D005646 ORTHO05D006828 4.5e-113 412.5 405 56.8
MSTRG.20533 Avicennia marina HOM05D005646 ORTHO05D006828 7.8e-113 411.8 544 49.1
Gohir.D10G253200 Gossypium hirsutum HOM05D005646 ORTHO05D006828 7.8e-113 411.8 412 53.6
Eucgr.J01194 Eucalyptus grandis HOM05D005646 ORTHO05D006828 1.3e-112 411.0 427 55.3
Solyc01g068470.4 Solanum lycopersicum HOM05D005646 ORTHO05D006828 1.7e-112 410.6 440 54.3
Migut.B01206 Erythranthe guttata HOM05D005646 ORTHO05D006828 2.3e-112 410.2 500 49.4
Gohir.A10G241000 Gossypium hirsutum HOM05D005646 ORTHO05D006828 1.6e-110 404.1 399 54.6
Peaxi162Scf00309g00328 Petunia axillaris HOM05D005646 ORTHO05D006828 2.1e-110 403.7 454 51.5
CAN.G1571.4 Capsicum annuum HOM05D005646 ORTHO05D006828 2.8e-110 403.3 461 52.7
CDE08G1053 Ceratophyllum demersum HOM05D005646 ORTHO05D006828 3.6e-110 402.9 436 54.1
Ca_20909_v3 Cicer arietinum L. HOM05D005646 ORTHO05D006828 1.8e-109 400.6 403 55.6
Thecc.10G006200 Theobroma cacao HOM05D005646 ORTHO05D006828 3.0e-109 399.8 393 56.2
SGA_v2.0_scaffold249G44948 Striga asiatica HOM05D005646 ORTHO05D006828 1.5e-108 397.5 529 47.6
Lj9A646T48 Lonicera japonica HOM05D005646 ORTHO05D006828 2.0e-108 397.1 357 60.8
Sopen01g030430 Solanum pennellii HOM05D005646 ORTHO05D006828 3.4e-108 396.4 464 51.9
Lj3g0019487 Lotus japonicus HOM05D005646 ORTHO05D006828 4.4e-108 396.0 423 53.2
Potri.001G024200 Populus trichocarpa HOM05D005646 ORTHO05D006828 4.4e-108 396.0 404 53.7
MD02G1293900 Malus domestica HOM05D005646 ORTHO05D006828 5.8e-108 395.6 481 48.9
VMungo1127G2196 Vigna mungo HOM05D005646 ORTHO05D006828 9.8e-108 394.8 440 51.8
Lsat_1_v5_gn_4_30541 Lactuca sativa HOM05D005646 ORTHO05D006828 1.7e-107 394.0 417 54.9
Nitab4.5_0000316g0120 Nicotiana tabacum HOM05D005646 ORTHO05D006828 8.3e-107 391.7 414 53.6
Sed0017230 Sechium edule HOM05D005646 ORTHO05D006828 1.1e-106 391.3 404 54.7
Ciclev10031582m.g Citrus clementina HOM05D005646 ORTHO05D006828 1.8e-106 390.6 475 48.4
THA.LOC104824183 Tarenaya hassleriana HOM05D005646 ORTHO05D006828 2.4e-106 390.2 426 51.9
COL.COLO4_33459 Corchorus olitorius HOM05D005646 ORTHO05D006828 1.2e-105 387.9 439 50.6
Glyma.11G113800 Glycine max HOM05D005646 ORTHO05D006828 1.6e-105 387.5 399 53.9
Sc17g0003830 Simmondsia chinensis HOM05D005646 ORTHO05D006828 1.6e-105 387.5 432 50.2
Hund13332 Selenicereus undatus HOM05D005646 ORTHO05D006828 4.6e-105 386.0 568 44.5
MBI19_g40603_MAGBIO Magnolia biondii HOM05D005646 ORTHO05D006828 6.0e-105 385.6 479 49.7
Sabra01G0018200 Salix brachista HOM05D005646 ORTHO05D000112 1.3e-104 384.4 514 46.7
arahy.Tifrunner.gnm1.ann1.HJ7TPY Arachis hypogaea HOM05D005646 ORTHO05D006828 3.0e-104 383.3 422 52.4
MELO3C005130.2 Cucumis melo HOM05D005646 ORTHO05D006828 3.0e-104 383.3 422 54.0
HanXRQChr16g0525351 Helianthus annuus HOM05D005646 ORTHO05D006828 3.0e-104 383.3 411 53.5
Atru.chr11.2492 Acer truncatum HOM05D005646 ORTHO05D006828 3.9e-104 382.9 442 48.9
ClCG01G007660 Citrullus lanatus HOM05D005646 ORTHO05D006828 3.9e-104 382.9 455 50.1
TWI63G1320 Tripterygium wilfordii HOM05D005646 ORTHO05D006828 5.0e-104 382.5 442 50.5
Aqoxy1G00222 Aquilegia oxysepala HOM05D005646 ORTHO05D006828 6.6e-104 382.1 360 57.8
Ah.10g030810 Amaranthus hybridus HOM05D005646 ORTHO05D006828 1.1e-103 381.3 566 43.6
TPR.G30507 Trifolium pratense HOM05D005646 ORTHO05D006828 1.1e-103 381.3 480 48.1
Medtr4g071010 Medicago truncatula HOM05D005646 ORTHO05D006828 1.9e-103 380.6 417 51.1
CsaV3_5G024710 Cucumis sativus L. HOM05D005646 ORTHO05D006828 9.5e-103 378.3 421 52.5
Carub.0004s2080 Capsella rubella HOM05D005646 ORTHO05D006828 1.2e-102 377.9 426 50.2
ECA234G1046 Erigeron canadensis HOM05D005646 ORTHO05D006828 1.2e-102 377.9 398 53.5
SalBow5G2661 Salvia bowleyana HOM05D005646 ORTHO05D006828 1.2e-102 377.9 493 47.9
EL10Ac2g02850 Beta vulgaris HOM05D005646 ORTHO05D006828 2.1e-102 377.1 567 43.4
CANSAT54G2531 Cannabis sativa HOM05D005646 ORTHO05D006828 2.8e-102 376.7 420 51.2
Lalb_Chr03g0025471 Lupinus albus HOM05D005646 ORTHO05D006828 8.0e-102 375.2 360 57.2
Atru.chr11.2464 Acer truncatum HOM05D005646 ORTHO05D006828 5.2e-101 372.5 390 52.1
ATR0217G018 Amborella trichopoda HOM05D005646 ORTHO05D006828 2.0e-100 370.5 454 49.1
AUR62032557 Chenopodium quinoa HOM05D005646 ORTHO05D006828 5.8e-100 369.0 578 41.5
arahy.Tifrunner.gnm1.ann1.2P0PPD Arachis hypogaea HOM05D005646 ORTHO05D006828 1.3e-99 367.9 405 51.9
FAN18G3275 Fragaria x ananassa HOM05D005646 ORTHO05D006828 1.3e-99 367.9 387 52.2
FvH4_5g29000 Fragaria vesca HOM05D005646 ORTHO05D006828 2.2e-99 367.1 390 51.8
RcHm_v2.0_Chr7g0221681 Rosa chinensis HOM05D005646 ORTHO05D006828 3.7e-99 366.3 342 56.4
FAN13G1025 Fragaria x ananassa HOM05D005646 ORTHO05D006828 5.4e-98 362.5 361 54.6
Sp4g21170 Schrenkiella parvula HOM05D005646 ORTHO05D006828 5.4e-98 362.5 411 50.1
FAN08G2254 Fragaria x ananassa HOM05D005646 ORTHO05D006828 7.0e-98 362.1 391 52.9
AUR62031673 Chenopodium quinoa HOM05D005646 ORTHO05D006828 1.0e-96 358.2 612 39.4
CARHR133490 Cardamine hirsuta HOM05D005646 ORTHO05D006828 3.0e-96 356.7 344 54.9
Haze_03084 Corylus avellana HOM05D005646 ORTHO05D006828 6.6e-96 355.5 413 51.3
Actinidia19445 Actinidia chinensis HOM05D005646 ORTHO05D006828 1.1e-95 354.8 326 56.7
A03p21590 Brassica napus HOM05D005646 ORTHO05D006828 1.1e-95 354.8 417 48.9
AL4G36080 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 1.9e-95 354.0 412 49.0
C03p25580 Brassica napus HOM05D005646 ORTHO05D006828 1.9e-95 354.0 414 49.0
unitig_746.g26627 Utricularia gibba HOM05D005646 ORTHO05D006828 1.9e-95 354.0 500 46.8
BraA03t11395Z Brassica rapa HOM05D005646 ORTHO05D006828 4.0e-93 346.3 436 47.2
Prupe.2G029800 Prunus persica HOM05D005646 ORTHO05D006828 1.2e-92 344.7 483 46.4
AT2G38780 Arabidopsis thaliana HOM05D005646 ORTHO05D006828 2.0e-92 344.0 450 46.2
Nn7g36491 Nelumbo nucifera HOM05D005646 ORTHO05D006828 3.4e-92 343.2 422 51.2
Aa31LG5G20900 Aethionema arabicum HOM05D005646 ORTHO05D006828 2.9e-91 340.1 455 45.7
BolC3t14946H Brassica oleracea HOM05D005646 ORTHO05D006828 2.9e-91 340.1 436 46.6
PSO341G0002 Papaver somniferum HOM05D005646 ORTHO05D006828 1.9e-90 337.4 294 58.5
PSO063G6839 Papaver somniferum HOM05D005646 ORTHO05D006828 9.2e-90 335.1 411 48.9
Thhalv10016593m.g Eutrema salsugineum HOM05D005646 ORTHO05D006828 1.6e-89 334.3 358 52.2
Cpa.g.sc197.4 Carica papaya HOM05D005646 ORTHO05D006828 4.6e-89 332.8 345 52.5
Nitab4.5_0013777g0020 Nicotiana tabacum HOM05D005646 ORTHO05D006828 3.1e-85 320.1 413 48.4
TAR053G0001 Trochodendron aralioides HOM05D005646 ORTHO05D006828 5.2e-85 319.3 495 44.0
SEGI_25656 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 7.1e-82 308.9 419 45.6
Rhsim07G0062900 Rhododendron simsii HOM05D005646 ORTHO05D006828 1.0e-80 305.1 280 55.7
HPP92_001013 Vanilla planifolia HOM05D005646 ORTHO05D006828 5.1e-80 302.8 328 50.6
vmacro13731 Vaccinium macrocarpon HOM05D005646 ORTHO05D006828 1.2e-73 281.6 839 29.6
Dinv31492 Davidia involucrata HOM05D005646 ORTHO05D006828 2.5e-71 273.9 396 46.0
Phvul.011G041800 Phaseolus vulgaris HOM05D005646 ORTHO05D006828 6.2e-70 269.2 337 50.7
Zm00001eb347150 Zea mays HOM05D005646 ORTHO05D006828 4.0e-69 266.5 414 41.3
Mapoly0066s0082 Marchantia polymorpha HOM05D005646 ORTHO05D006828 8.4e-67 258.8 303 47.9
Psat7g183120 Pisum sativum HOM05D005646 ORTHO05D006828 1.6e-62 244.6 379 44.3
Sc15g0003140 Simmondsia chinensis HOM05D005646 ORTHO05D006828 5.3e-61 239.6 285 46.0
Pp3c21_7940 Physcomitrium patens HOM05D005646 ORTHO05D006828 9.0e-61 238.8 318 43.4
SMO145G0178 Selaginella moellendorffii HOM05D005646 ORTHO05D006828 5.6e-55 219.5 290 42.8
AagrBONN_evm.TU.Sc2ySwM_228.261 Anthoceros agrestis HOM05D005646 ORTHO05D006828 9.6e-55 218.8 512 34.0
GSVIVG01000664001 Vitis vinifera HOM05D005646 ORTHO05D006828 5.1e-48 196.4 171 62.0
Os05g0381500 Oryza sativa ssp. japonica HOM05D005646 ORTHO05D006828 1.1e-47 195.3 203 48.8
AL4G20430 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 9.7e-47 192.2 289 41.5
RcHm_v2.0_Chr2g0113191 Rosa chinensis HOM05D005646 ORTHO05D006828 4.8e-38 163.3 243 42.8
RcHm_v2.0_Chr4g0400611 Rosa chinensis HOM05D005646 ORTHO05D006828 4.8e-38 163.3 168 53.6
PGSC0003DMG400000847 Solanum tuberosum HOM05D005646 ORTHO05D006828 5.3e-37 159.8 130 62.3
CBR_g29393 Chara braunii HOM05D005646 ORTHO05D006828 4.5e-36 156.8 219 42.0
Glyma.18G124100 Glycine max HOM05D005646 ORTHO05D006828 3.2e-34 150.6 160 51.2
Glyma.12G039666 Glycine max HOM05D005646 ORTHO05D006828 1.8e-32 144.8 125 60.8
Cre13.g607900 Chlamydomonas reinhardtii HOM05D005646 ORTHO05D006828 1.5e-31 141.7 228 35.5
PSO017G4843 Papaver somniferum HOM05D005646 ORTHO05D006828 2.8e-30 137.5 124 55.6
SalBow1G3971 Salvia bowleyana HOM05D005646 ORTHO05D006828 3.8e-27 127.1 81 76.5
AL4G20290 Arabidopsis lyrata HOM05D005646 ORTHO05D006828 8.5e-27 125.9 118 54.2
PRCOL_00006924 Prasinoderma coloniale HOM05D005646 ORTHO05D006828 1.1e-26 125.6 263 31.6
RcHm_v2.0_Chr2g0154951 Rosa chinensis HOM05D005646 ORTHO05D006828 1.6e-25 121.7 150 46.7
SEGI_07819 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 4.7e-25 120.2 126 51.6
SEGI_35855 Sequoiadendron giganteum HOM05D005646 ORTHO05D006828 4.7e-25 120.2 126 51.6
arahy.Tifrunner.gnm1.ann1.7I4JN8 Arachis hypogaea HOM05D005646 ORTHO05D006828 2.2e-19 101.3 62 72.6
RcHm_v2.0_Chr4g0400621 Rosa chinensis HOM05D005646 ORTHO05D006828 1.0e-16 92.4 86 54.7
COL.COLO4_25675 Corchorus olitorius HOM05D005646 ORTHO05D006828 2.0e-15 88.2 67 58.2
arahy.Tifrunner.gnm1.ann1.B52RT5 Arachis hypogaea HOM05D005646 ORTHO05D006828 3.7e-14 84.0 92 47.8
PGSC0003DMG400000846 Solanum tuberosum HOM05D005646 ORTHO05D006828 7.0e-13 79.7 71 59.2
MCO02G103 Micromonas commoda HOM05D005646 ORTHO05D006828 5.0e-11 73.6 123 32.5
RcHm_v2.0_Chr4g0400631 Rosa chinensis HOM05D005646 ORTHO05D006828 1.0e-08 65.9 46 63.0
Glyma.12G039732 Glycine max HOM05D005646 ORTHO05D006828 1.4e-08 65.5 158 33.5
CBR_g38389 Chara braunii HOM05D005646 ORTHO05D006828 4.0e-08 63.9 144 29.9
CARHR125840 Cardamine hirsuta HOM05D005646 ORTHO05D006828 1.3e-06 58.9 104 40.4
Actinidia19446 Actinidia chinensis HOM05D005646 ORTHO05D006828 4.8e-06 57.0 136 33.8
GSVIVG01038299001 Vitis vinifera HOM05D005646 ORTHO05D006828 6.3e-06 56.6 44 61.4


User provided reference genes

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