Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 2.5e-259 898.3 454 100.0
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 5.3e-177 624.8 457 71.8
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 1.2e-176 623.6 453 72.6
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 1.3e-175 620.2 458 72.1
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 2.7e-173 612.5 461 72.0
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 6.0e-173 611.3 459 71.2
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 1.0e-172 610.5 461 70.3
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 8.7e-172 607.4 469 68.9
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 1.5e-171 606.7 457 71.3
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 2.1e-170 602.8 440 73.0
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 4.8e-170 601.7 453 70.9
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 6.2e-170 601.3 450 70.7
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 6.2e-170 601.3 451 70.1
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 1.8e-169 599.7 461 67.7
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 2.4e-169 599.4 466 68.9
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 3.1e-169 599.0 492 66.7
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 5.3e-169 598.2 455 69.2
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.2e-168 597.0 451 68.5
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 2.0e-168 596.3 460 69.6
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 4.5e-168 595.1 459 67.3
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 4.5e-168 595.1 533 61.2
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 5.8e-168 594.7 459 69.5
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 1.7e-167 593.2 460 69.6
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 4.9e-167 591.7 460 69.3
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 8.4e-167 590.9 462 69.0
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 3.2e-166 589.0 449 70.4
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 9.3e-166 587.4 459 68.4
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 2.1e-165 586.3 459 68.0
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 6.0e-165 584.7 460 68.0
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 1.3e-164 583.6 453 68.2
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 1.8e-164 583.2 451 68.5
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 3.9e-164 582.0 446 68.6
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 3.9e-164 582.0 460 67.0
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 5.1e-164 581.6 463 67.4
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 1.5e-163 580.1 475 64.8
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 1.9e-163 579.7 451 68.7
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 3.3e-163 578.9 448 69.4
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 5.6e-163 578.2 459 68.2
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 5.6e-163 578.2 451 68.7
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 7.4e-163 577.8 463 67.2
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 7.4e-163 577.8 450 68.4
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 7.4e-163 577.8 451 68.5
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 7.4e-163 577.8 455 67.5
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 2.8e-162 575.9 447 68.2
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 3.7e-162 575.5 450 68.2
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 3.7e-162 575.5 447 68.2
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 4.8e-162 575.1 463 67.0
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 4.8e-162 575.1 463 66.7
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 4.8e-162 575.1 463 67.0
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 8.2e-162 574.3 459 66.4
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 1.4e-161 573.5 460 67.8
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 3.1e-161 572.4 465 66.2
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 4.0e-161 572.0 450 68.0
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 5.3e-161 571.6 453 66.9
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 6.9e-161 571.2 459 67.1
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 9.0e-161 570.9 460 65.9
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 9.0e-161 570.9 480 64.8
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 4.5e-160 568.5 456 66.7
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 1.0e-159 567.4 460 66.3
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 6.5e-159 564.7 449 67.5
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 6.5e-159 564.7 449 66.4
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 1.4e-158 563.5 429 71.3
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 7.1e-158 561.2 469 65.9
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 6.0e-157 558.1 481 63.8
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 1.3e-156 557.0 461 65.5
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 2.3e-156 556.2 451 68.1
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 2.3e-156 556.2 428 69.4
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 2.3e-156 556.2 461 65.5
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 2.3e-156 556.2 462 66.0
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 5.1e-156 555.1 452 65.3
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 5.1e-156 555.1 462 65.8
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 8.7e-156 554.3 462 65.4
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 5.7e-155 551.6 453 65.6
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 9.7e-155 550.8 453 65.1
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 1.6e-154 550.1 461 64.6
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 2.8e-154 549.3 464 65.3
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 4.8e-154 548.5 459 64.1
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 6.3e-154 548.1 457 66.1
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 8.2e-154 547.7 462 65.4
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 1.4e-153 547.0 461 64.6
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 1.8e-153 546.6 460 66.7
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 3.1e-153 545.8 474 63.1
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 3.1e-153 545.8 460 64.3
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 4.1e-153 545.4 455 65.3
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 6.9e-153 544.7 452 65.5
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 1.2e-152 543.9 451 66.5
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 2.2e-151 539.7 450 66.0
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 2.2e-151 539.7 460 65.4
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 2.9e-151 539.3 459 63.2
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 5.0e-151 538.5 452 63.5
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 6.5e-151 538.1 459 63.2
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 6.5e-151 538.1 451 65.0
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 1.1e-150 537.3 452 62.4
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 1.9e-150 536.6 456 64.0
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 2.5e-150 536.2 456 63.8
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 2.5e-150 536.2 456 63.8
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 2.5e-150 536.2 457 62.6
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 3.2e-150 535.8 458 64.2
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 9.3e-150 534.3 473 63.2
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 9.3e-150 534.3 432 66.4
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 2.7e-149 532.7 453 65.6
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 3.6e-149 532.3 455 64.0
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 5.1e-148 528.5 457 63.5
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 8.8e-148 527.7 451 65.0
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 8.8e-148 527.7 488 60.5
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 1.5e-147 526.9 457 63.5
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 1.7e-146 523.5 453 63.4
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 2.8e-146 522.7 456 63.6
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 8.2e-146 521.2 453 63.4
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 1.5e-144 516.9 440 65.0
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 1.5e-144 516.9 440 65.0
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 5.9e-144 515.0 427 68.4
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 6.5e-143 511.5 452 63.9
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 1.4e-142 510.4 527 53.5
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 4.4e-139 498.8 423 65.2
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 7.4e-139 498.0 426 62.9
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 2.8e-138 496.1 443 61.6
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 2.6e-136 489.6 420 65.5
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 3.8e-135 485.7 457 57.8
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 3.8e-135 485.7 467 57.8
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.0e-132 477.6 452 57.5
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 3.3e-131 472.6 429 57.8
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 9.7e-131 471.1 435 60.0
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 2.6e-128 463.0 514 55.3
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 2.2e-127 459.9 416 63.0
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 1.6e-125 453.8 445 56.4
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 6.8e-116 421.8 447 53.0
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 4.4e-115 419.1 460 55.2
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 3.7e-114 416.0 432 51.4
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.8e-113 413.7 392 58.4
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 8.3e-106 388.3 480 47.7
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 5.4e-105 385.6 292 70.5
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 3.5e-104 382.9 303 66.3
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 6.6e-103 378.6 345 61.2
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 9.8e-99 364.8 450 49.8
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 1.3e-98 364.4 457 48.1
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 3.7e-98 362.8 319 63.9
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 1.0e-95 354.8 281 66.9
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 6.2e-93 345.5 449 46.8
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 1.2e-85 321.2 300 60.0
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.2e-72 278.1 281 56.6
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 1.6e-69 267.7 475 39.8
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 7.6e-67 258.8 237 60.8
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 8.4e-66 255.4 189 69.8
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 2.4e-65 253.8 337 44.8
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 5.1e-63 246.1 197 67.0
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 1.5e-62 244.6 196 66.3
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 5.6e-62 242.7 195 66.2
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 1.2e-59 235.0 523 36.3
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 2.2e-58 230.7 261 53.3
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 1.4e-57 228.0 220 55.5
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 1.0e-55 221.9 186 66.7
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 5.6e-54 216.1 218 53.7
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 3.7e-53 213.4 133 83.5
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 5.1e-47 193.0 293 42.0
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 2.8e-45 187.2 139 69.1
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 6.9e-44 182.6 100 88.0
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 9.0e-44 182.2 167 55.1
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 7.1e-41 172.6 131 66.4
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 1.0e-39 168.7 443 31.8
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 1.8e-36 157.9 295 35.3
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 5.9e-35 152.9 172 45.3
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 1.1e-33 148.7 293 36.2
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 5.3e-28 129.8 101 64.4
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 2.9e-26 124.0 79 82.3
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 6.5e-26 122.9 112 65.2
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 5.5e-25 119.8 115 53.9
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 2.7e-24 117.5 126 59.5
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 1.0e-23 115.5 154 51.3
arahy.Tifrunner.gnm1.ann1.F9GSXH Arachis hypogaea HOM05D003886 ORTHO05D019782 1.0e-18 99.0 125 51.2
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 3.0e-15 87.4 51 82.4
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 3.9e-15 87.0 100 56.0
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 7.4e-14 82.8 51 78.4
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 1.3e-13 82.0 91 52.7
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 5.9e-11 73.2 51 70.6
Gohir.A07G077000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 8.5e-10 69.3 61 65.6
Lsat_1_v5_gn_7_81560 Lactuca sativa HOM05D000267 ORTHO05D029881 1.1e-09 68.9 76 53.9
SHI44505 Sapria himalayana HOM05D003886 ORTHO05D009901 2.0e-06 58.2 36 69.4
arahy.Tifrunner.gnm1.ann1.EDPG13 Arachis hypogaea HOM05D003961 ORTHO05D038865 4.4e-06 57.0 111 40.5
Dinv30975 Davidia involucrata HOM05D000190 ORTHO05D000113 7.5e-06 56.2 115 40.9
Lsat_1_v5_gn_6_25880 Lactuca sativa HOM05D000267 ORTHO05D029881 7.5e-06 56.2 35 74.3


User provided reference genes

Program Settings