Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 1.3e-168 596.3 300 100.0
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 5.2e-80 302.0 242 64.5
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 9.7e-79 297.7 211 72.0
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 3.2e-74 282.7 250 59.2
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.1e-73 280.0 247 57.9
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 3.6e-73 279.3 241 60.2
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 4.7e-73 278.9 241 59.8
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 8.0e-73 278.1 247 57.5
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.4e-72 277.3 247 57.1
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 1.8e-72 276.9 255 57.6
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 3.0e-72 276.2 241 59.8
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 4.0e-72 275.8 242 58.3
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 4.0e-72 275.8 248 58.1
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 6.8e-72 275.0 241 58.1
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 6.8e-72 275.0 260 53.8
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.2e-71 274.2 242 59.5
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 2.6e-71 273.1 241 57.7
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 2.6e-71 273.1 242 58.3
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 4.4e-71 272.3 247 58.7
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 4.4e-71 272.3 245 59.6
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 5.7e-71 271.9 244 59.4
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 7.5e-71 271.6 243 59.7
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 2.2e-70 270.0 238 57.6
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 3.7e-70 269.2 249 57.4
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 1.4e-69 267.3 248 56.0
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 1.8e-69 266.9 238 57.1
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 1.8e-69 266.9 239 58.6
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.8e-69 266.9 245 55.9
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 2.4e-69 266.5 242 57.4
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 2.4e-69 266.5 243 57.6
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 4.1e-69 265.8 250 55.2
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 7.0e-69 265.0 249 57.0
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 7.0e-69 265.0 262 52.7
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 2.7e-68 263.1 235 57.9
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 3.5e-68 262.7 243 55.1
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 4.5e-68 262.3 260 52.7
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 5.9e-68 261.9 254 55.1
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 5.9e-68 261.9 254 54.3
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 5.9e-68 261.9 254 54.3
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 5.9e-68 261.9 254 55.1
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 1.0e-67 261.2 249 55.8
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 1.0e-67 261.2 250 55.2
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.0e-67 261.2 246 54.1
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.3e-67 260.8 248 54.4
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 1.3e-67 260.8 243 57.2
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.3e-67 260.8 248 55.2
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.3e-67 260.8 230 58.7
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 1.7e-67 260.4 254 54.7
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 1.7e-67 260.4 243 54.7
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.9e-67 259.6 243 54.7
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 3.8e-67 259.2 237 56.5
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 3.8e-67 259.2 247 55.1
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 3.8e-67 259.2 237 59.1
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 5.0e-67 258.8 245 55.5
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 5.0e-67 258.8 245 55.5
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 6.5e-67 258.5 247 55.1
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 6.5e-67 258.5 276 50.7
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 8.5e-67 258.1 236 53.8
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 1.5e-66 257.3 253 52.2
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 2.5e-66 256.5 238 55.9
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 2.5e-66 256.5 241 56.4
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 2.5e-66 256.5 245 54.3
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 3.2e-66 256.1 249 55.8
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 3.2e-66 256.1 249 55.8
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 9.4e-66 254.6 250 54.4
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 1.2e-65 254.2 237 55.3
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 4.7e-65 252.3 237 54.9
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 4.7e-65 252.3 250 54.8
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 6.1e-65 251.9 240 55.8
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 3.0e-64 249.6 201 63.7
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 5.2e-64 248.8 234 55.6
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 6.8e-64 248.4 248 52.4
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 8.8e-64 248.1 245 53.9
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 2.0e-63 246.9 259 49.4
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 2.0e-63 246.9 240 53.3
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 5.7e-63 245.4 238 53.8
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 5.7e-63 245.4 244 52.9
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 7.5e-63 245.0 238 52.9
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 9.8e-63 244.6 248 53.6
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 9.8e-63 244.6 250 52.8
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 1.3e-62 244.2 244 52.9
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.3e-62 244.2 247 50.6
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 1.3e-62 244.2 248 52.8
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 2.8e-62 243.0 244 51.6
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 2.8e-62 243.0 236 53.8
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 4.9e-62 242.3 245 52.2
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 4.9e-62 242.3 240 53.3
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 6.3e-62 241.9 253 52.6
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 6.3e-62 241.9 235 53.6
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 1.8e-61 240.4 247 49.8
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 1.8e-61 240.4 195 60.5
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 2.4e-61 240.0 246 52.0
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 2.4e-61 240.0 238 53.8
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 3.1e-61 239.6 248 51.2
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 7.0e-61 238.4 248 53.6
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 7.0e-61 238.4 238 52.1
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 9.2e-61 238.0 252 50.4
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 9.2e-61 238.0 209 57.9
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 1.2e-60 237.7 250 50.0
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 1.2e-60 237.7 303 44.9
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.0e-60 236.9 256 49.2
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 2.0e-60 236.9 247 51.4
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 2.0e-60 236.9 248 50.8
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.7e-60 236.5 256 50.0
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 3.5e-60 236.1 238 53.4
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 3.5e-60 236.1 239 53.6
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 4.5e-60 235.7 239 53.6
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 4.5e-60 235.7 238 52.1
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 7.7e-60 235.0 235 52.8
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 7.7e-60 235.0 285 47.4
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 7.7e-60 235.0 249 52.2
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.3e-59 234.2 229 52.8
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 1.3e-59 234.2 239 53.1
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 2.3e-59 233.4 239 52.7
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 2.9e-59 233.0 235 51.9
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 2.9e-59 233.0 227 55.1
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 1.5e-58 230.7 263 49.4
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.9e-58 230.3 220 55.5
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 2.5e-58 229.9 247 49.0
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 3.3e-58 229.6 236 51.7
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 7.3e-58 228.4 238 51.7
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 1.2e-57 227.6 242 50.8
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 4.7e-57 225.7 261 47.5
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 8.0e-57 224.9 232 51.3
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 4.4e-55 219.2 240 50.8
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 5.7e-55 218.8 375 37.6
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 5.7e-55 218.8 240 50.4
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 2.9e-54 216.5 250 47.6
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 8.3e-54 214.9 250 47.6
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 1.1e-53 214.5 243 47.7
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 9.2e-53 211.5 272 44.5
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 9.5e-50 201.4 204 54.4
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 1.6e-49 200.7 284 43.0
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 1.4e-48 197.6 227 48.9
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 5.2e-48 195.7 233 44.2
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 5.8e-47 192.2 237 44.7
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 1.3e-46 191.0 210 50.0
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 3.7e-46 189.5 204 49.5
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 4.9e-46 189.1 211 48.8
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 1.1e-45 188.0 135 65.9
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 1.9e-45 187.2 198 51.5
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 1.9e-45 187.2 221 47.5
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 1.9e-45 187.2 238 47.9
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.6e-44 184.1 243 46.1
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.7e-44 183.3 253 43.1
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 4.6e-44 182.6 262 42.0
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 6.0e-44 182.2 242 47.1
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 7.8e-44 181.8 192 50.0
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.9e-43 179.5 253 41.1
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 1.2e-41 174.5 294 41.5
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 2.8e-41 173.3 247 42.5
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 5.1e-35 152.5 251 38.6
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 2.5e-34 150.2 138 55.1
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 4.7e-33 146.0 231 40.7
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 6.2e-33 145.6 242 38.0
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 2.3e-32 143.7 151 51.7
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 1.2e-31 141.4 132 55.3
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 1.3e-30 137.9 149 52.3
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 2.9e-30 136.7 94 70.2
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 3.8e-30 136.3 215 40.9
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 4.1e-29 132.9 93 67.7
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 1.2e-28 131.3 149 47.0
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 1.7e-27 127.5 204 39.7
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 6.6e-27 125.6 249 34.9
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 3.3e-26 123.2 138 47.1
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 4.3e-26 122.9 137 45.3
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 3.8e-22 109.8 204 37.7
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.4e-21 107.8 111 47.7
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 4.6e-20 102.8 170 37.6
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 3.0e-19 100.1 82 58.5
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 6.6e-19 99.0 128 44.5
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 5.6e-18 95.9 62 69.4
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 7.3e-18 95.5 191 34.0
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 1.4e-16 91.3 81 51.9
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 6.4e-14 82.4 61 65.6
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 1.6e-12 77.8 52 71.2
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 1.8e-08 64.3 52 59.6
BcaC01g00775 Brassica carinata HOM05D056010 ORTHO05D039557 8.4e-06 55.5 34 76.5


User provided reference genes

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