Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_022164 Daucus carota HOM05D006315 ORTHO05D008052 1.4e-187 659.4 337 100.0
Ciclev10001688m.g Citrus clementina HOM05D006315 ORTHO05D008052 2.2e-127 459.5 340 71.2
Gohir.D11G275200 Gossypium hirsutum HOM05D006315 ORTHO05D008052 1.1e-126 457.2 345 69.0
Gorai.007G297000 Gossypium raimondii HOM05D006315 ORTHO05D008052 1.1e-126 457.2 345 69.0
Actinidia05703 Actinidia chinensis HOM05D006315 ORTHO05D008052 2.7e-125 452.6 345 67.0
Dinv40287 Davidia involucrata HOM05D006315 ORTHO05D008052 2.7e-125 452.6 347 68.3
CSS0039769 Camellia sinensis var. sinensis HOM05D006315 ORTHO05D008052 7.7e-125 451.1 347 66.9
Lsat_1_v5_gn_9_86000 Lactuca sativa HOM05D006315 ORTHO05D008052 3.8e-124 448.7 333 69.7
Duzib128G1131 Durio zibethinus HOM05D006315 ORTHO05D008052 5.0e-124 448.4 303 73.9
Prupe.6G325900 Prunus persica HOM05D006315 ORTHO05D008052 6.5e-124 448.0 300 73.0
Thecc.05G303200 Theobroma cacao HOM05D006315 ORTHO05D008052 8.5e-124 447.6 303 73.9
COL.COLO4_13471 Corchorus olitorius HOM05D006315 ORTHO05D008052 1.5e-123 446.8 301 74.1
Nn6g32180 Nelumbo nucifera HOM05D006315 ORTHO05D008052 1.9e-123 446.4 298 75.2
PGR083G2010 Punica granatum HOM05D006315 ORTHO05D008052 9.4e-123 444.1 295 74.2
Cfa006589 Carpinus fangiana HOM05D006315 ORTHO05D008052 1.2e-122 443.7 354 67.2
QL03p006996 Quercus lobata HOM05D006315 ORTHO05D008052 4.7e-122 441.8 301 73.8
Sp2g20750 Schrenkiella parvula HOM05D006315 ORTHO05D008052 4.7e-122 441.8 298 73.2
AL6G39450 Arabidopsis lyrata HOM05D006315 ORTHO05D008052 6.1e-122 441.4 293 73.7
RhsimUnG0225800 Rhododendron simsii HOM05D006315 ORTHO05D008052 6.1e-122 441.4 358 67.0
Sabra13G0023200 Salix brachista HOM05D006315 ORTHO05D008052 8.0e-122 441.0 333 69.7
CiPaw.07G017800 Carya illinoinensis HOM05D006315 ORTHO05D008052 1.4e-121 440.3 300 74.3
Manes.09G167100 Manihot esculenta HOM05D006315 ORTHO05D008052 2.3e-121 439.5 301 73.1
Thhalv10004542m.g Eutrema salsugineum HOM05D006315 ORTHO05D008052 6.8e-121 438.0 294 72.8
Potri.013G020800 Populus trichocarpa HOM05D006315 ORTHO05D008052 1.2e-120 437.2 343 67.3
Eucgr.B01969 Eucalyptus grandis HOM05D006315 ORTHO05D008052 3.4e-120 435.6 296 73.3
Sopen01g042560 Solanum pennellii HOM05D006315 ORTHO05D008052 5.7e-120 434.9 332 68.4
RcHm_v2.0_Chr3g0454751 Rosa chinensis HOM05D006315 ORTHO05D008052 7.5e-120 434.5 300 72.0
GSVIVG01000051001 Vitis vinifera HOM05D006315 ORTHO05D008052 7.5e-120 434.5 310 71.3
CARHR186120 Cardamine hirsuta HOM05D006315 ORTHO05D008052 9.8e-120 434.1 301 72.4
Oeu020852.1 Olea europaea HOM05D006315 ORTHO05D008052 1.7e-119 433.3 347 65.4
Carub.0006s2500 Capsella rubella HOM05D006315 ORTHO05D008052 2.2e-119 433.0 316 69.3
THA.LOC104818698 Tarenaya hassleriana HOM05D006315 ORTHO05D008052 4.9e-119 431.8 320 68.8
PGSC0003DMG400018995 Solanum tuberosum HOM05D006315 ORTHO05D008052 8.3e-119 431.0 331 69.5
A09p05350 Brassica napus HOM05D006315 ORTHO05D008052 1.1e-118 430.6 316 69.0
BraA09t36173Z Brassica rapa HOM05D006315 ORTHO05D008052 1.1e-118 430.6 316 69.0
CAN.G1034.11 Capsicum annuum HOM05D006315 ORTHO05D008052 1.4e-118 430.3 346 66.8
FAN02G1008 Fragaria x ananassa HOM05D006315 ORTHO05D008052 4.1e-118 428.7 299 71.6
PSO675G8687 Papaver somniferum HOM05D006315 ORTHO05D008052 4.1e-118 428.7 326 69.0
MD12G1219300 Malus domestica HOM05D006315 ORTHO05D008052 5.4e-118 428.3 329 67.2
TAR381G0108 Trochodendron aralioides HOM05D006315 ORTHO05D008052 5.4e-118 428.3 311 69.5
Cpa.g.sc48.53 Carica papaya HOM05D006315 ORTHO05D008052 7.0e-118 427.9 349 65.9
C09p05830 Brassica napus HOM05D006315 ORTHO05D008052 9.1e-118 427.6 313 70.3
BolC9t53510H Brassica oleracea HOM05D006315 ORTHO05D008052 9.1e-118 427.6 313 70.3
AT5G27560 Arabidopsis thaliana HOM05D006315 ORTHO05D008052 1.6e-117 426.8 305 70.8
Aa31LG11G9300 Aethionema arabicum HOM05D006315 ORTHO05D008052 3.5e-117 425.6 335 66.9
HanXRQChr02g0046151 Helianthus annuus HOM05D006315 ORTHO05D008052 3.5e-117 425.6 340 63.8
ECA236G1566 Erigeron canadensis HOM05D006315 ORTHO05D008052 4.5e-117 425.2 284 73.6
FAN05G4943 Fragaria x ananassa HOM05D006315 ORTHO05D008052 5.9e-117 424.9 299 71.2
FAN09G2245 Fragaria x ananassa HOM05D006315 ORTHO05D008052 5.9e-117 424.9 299 70.9
FvH4_6g05840 Fragaria vesca HOM05D006315 ORTHO05D008052 1.0e-116 424.1 299 70.9
AUR62000828 Chenopodium quinoa HOM05D006315 ORTHO05D008052 2.9e-116 422.5 328 67.4
Nitab4.5_0004395g0040 Nicotiana tabacum HOM05D006315 ORTHO05D008052 8.6e-116 421.0 302 71.5
TWI36G1375 Tripterygium wilfordii HOM05D006315 ORTHO05D008052 1.9e-115 419.9 305 69.8
FAN14G1304 Fragaria x ananassa HOM05D006315 ORTHO05D008052 1.2e-114 417.2 306 69.3
FAN14G3373 Fragaria x ananassa HOM05D006315 ORTHO05D008052 4.7e-114 415.2 306 69.0
Cc02_g33440 Coffea canephora HOM05D006315 ORTHO05D008052 5.2e-113 411.8 356 62.1
Lalb_Chr02g0148251 Lupinus albus HOM05D006315 ORTHO05D008052 5.2e-113 411.8 331 66.2
vmacro05019 Vaccinium macrocarpon HOM05D006315 ORTHO05D008052 6.8e-113 411.4 447 52.6
Ah.06g189370 Amaranthus hybridus HOM05D006315 ORTHO05D008052 1.5e-112 410.2 292 70.5
ClCG02G015800 Citrullus lanatus HOM05D006315 ORTHO05D008052 4.4e-112 408.7 330 65.2
FAN05G5779 Fragaria x ananassa HOM05D006315 ORTHO05D008052 4.4e-112 408.7 319 66.1
Sc06g0003310 Simmondsia chinensis HOM05D006315 ORTHO05D008052 5.7e-112 408.3 299 68.6
VMungo0720G2927 Vigna mungo HOM05D006315 ORTHO05D008052 5.7e-112 408.3 334 64.1
Phvul.007G180000 Phaseolus vulgaris HOM05D006315 ORTHO05D008052 7.5e-112 407.9 351 63.2
Peaxi162Scf00037g00325 Petunia axillaris HOM05D006315 ORTHO05D008052 9.8e-112 407.5 300 69.3
AUR62005146 Chenopodium quinoa HOM05D006315 ORTHO05D008052 1.3e-111 407.1 383 59.0
SalBow8G0023 Salvia bowleyana HOM05D006315 ORTHO05D008052 2.9e-111 406.0 307 69.4
Aqoxy6G00442 Aquilegia oxysepala HOM05D006315 ORTHO05D008052 6.4e-111 404.8 308 66.6
CsaV3_2G005300 Cucumis sativus L. HOM05D006315 ORTHO05D008052 1.1e-110 404.1 354 62.1
Glyma.10G154300 Glycine max HOM05D006315 ORTHO05D008052 1.8e-110 403.3 298 66.8
unitig_37.g12631 Utricularia gibba HOM05D006315 ORTHO05D008052 5.4e-110 401.7 328 64.3
arahy.Tifrunner.gnm1.ann1.9IE074 Arachis hypogaea HOM05D006315 ORTHO05D008052 7.0e-110 401.4 348 61.5
PSO541G4223 Papaver somniferum HOM05D006315 ORTHO05D008052 9.2e-110 401.0 305 69.2
Migut.B01035 Erythranthe guttata HOM05D006315 ORTHO05D008052 3.5e-109 399.1 342 62.3
MSTRG.16964 Avicennia marina HOM05D006315 ORTHO05D008052 4.6e-109 398.7 300 67.0
Hund07070 Selenicereus undatus HOM05D006315 ORTHO05D008052 3.9e-108 395.6 320 65.3
Glyma.20G234000 Glycine max HOM05D006315 ORTHO05D008052 3.3e-107 392.5 298 65.4
ATR1120G073 Amborella trichopoda HOM05D006315 ORTHO05D008052 5.6e-107 391.7 258 72.5
MBI01_g44539_MAGBIO Magnolia biondii HOM05D006315 ORTHO05D008052 5.6e-107 391.7 255 74.9
CDE06G2073 Ceratophyllum demersum HOM05D006315 ORTHO05D008052 6.2e-106 388.3 296 65.2
Psat6g151200 Pisum sativum HOM05D006315 ORTHO05D008052 1.8e-105 386.7 303 65.0
TPR.G6112 Trifolium pratense HOM05D006315 ORTHO05D008052 2.3e-105 386.3 299 65.6
Ca_10111_v3 Cicer arietinum L. HOM05D006315 ORTHO05D008052 4.0e-105 385.6 301 65.4
Gohir.A11G265000 Gossypium hirsutum HOM05D006315 ORTHO05D008052 5.2e-105 385.2 229 80.3
Lj5g0002172 Lotus japonicus HOM05D006315 ORTHO05D008052 1.5e-104 383.6 299 64.5
MELO3C004257.2 Cucumis melo HOM05D006315 ORTHO05D008052 1.9e-102 376.7 321 63.9
Sed0013855 Sechium edule HOM05D006315 ORTHO05D008052 5.4e-102 375.2 301 64.8
SGA_v2.0_scaffold13G06358 Striga asiatica HOM05D006315 ORTHO05D008052 7.0e-102 374.8 297 65.0
Medtr1g082900 Medicago truncatula HOM05D006315 ORTHO05D008052 2.0e-101 373.2 319 62.1
Solyc01g098990.4 Solanum lycopersicum HOM05D006315 ORTHO05D008052 2.7e-101 372.9 332 60.8
Atru.chr2.406 Acer truncatum HOM05D006315 ORTHO05D008052 6.6e-100 368.2 305 63.3
Haze_04196 Corylus avellana HOM05D006315 ORTHO05D008052 1.6e-98 363.6 301 64.5
SEGI_29864 Sequoiadendron giganteum HOM05D006315 ORTHO05D008052 4.6e-93 345.5 261 64.4
EL10Ac4g09351 Beta vulgaris HOM05D006315 ORTHO05D008052 1.4e-86 323.9 298 61.4
arahy.Tifrunner.gnm1.ann1.SMKB8G Arachis hypogaea HOM05D006315 ORTHO05D008052 6.4e-79 298.5 304 54.9
Zm00001eb377150 Zea mays HOM05D006315 ORTHO05D008052 8.4e-79 298.1 255 60.8
Mapoly0046s0092 Marchantia polymorpha HOM05D006315 ORTHO05D008052 9.6e-75 284.6 316 49.4
AagrBONN_evm.TU.Sc2ySwM_368.1535 Anthoceros agrestis HOM05D006315 ORTHO05D008052 6.2e-74 282.0 300 48.7
Lj5A533G15 Lonicera japonica HOM05D006315 ORTHO05D008052 2.0e-72 276.9 163 81.6
Nitab4.5_0000137g0320 Nicotiana tabacum HOM05D006315 ORTHO05D008052 1.7e-71 273.9 173 74.6
Pp3c1_23410 Physcomitrium patens HOM05D006315 ORTHO05D008052 7.6e-64 248.4 330 41.5
Eucgr.B01970 Eucalyptus grandis HOM05D006315 ORTHO05D008052 2.4e-62 243.4 186 63.4
SMO116G0320 Selaginella moellendorffii HOM05D006315 ORTHO05D008052 1.0e-60 238.0 224 50.9
Eucgr.B01875 Eucalyptus grandis HOM05D006315 ORTHO05D008052 6.2e-58 228.8 144 72.2
Lj5C470G0 Lonicera japonica HOM05D006315 ORTHO05D008052 1.8e-52 210.7 126 82.5
Lj5C532G5 Lonicera japonica HOM05D006315 ORTHO05D008052 1.8e-52 210.7 126 82.5
Actinidia23634 Actinidia chinensis HOM05D006315 ORTHO05D008052 3.3e-51 206.5 132 77.3
HPP92_002820 Vanilla planifolia HOM05D006315 ORTHO05D008052 9.6e-51 204.9 181 60.2
HPP92_002878 Vanilla planifolia HOM05D006315 ORTHO05D008052 1.1e-46 191.4 130 72.3
Cre17.g739550 Chlamydomonas reinhardtii HOM05D006315 ORTHO05D008052 7.9e-45 185.3 320 34.7
Hma1.2p1_0928F.1_g237790 Hydrangea macrophylla HOM05D006315 ORTHO05D008052 1.0e-36 158.3 156 59.6
PRCOL_00006277 Prasinoderma coloniale HOM05D006315 ORTHO05D008052 3.1e-33 146.7 286 32.5
MCO15G525 Micromonas commoda HOM05D006315 ORTHO05D008052 6.9e-33 145.6 326 31.9
EL10As4g23462 Beta vulgaris HOM05D006315 ORTHO05D008052 3.8e-31 139.8 106 72.6
Lj5P531T4 Lonicera japonica HOM05D006315 ORTHO05D008052 2.5e-22 110.5 83 66.3
Lj5A532G12 Lonicera japonica HOM05D006315 ORTHO05D008052 6.1e-21 105.9 215 38.1
Aa31LG11G9280 Aethionema arabicum HOM05D006315 ORTHO05D059511 4.4e-19 99.8 92 57.6
Lj5P469T8 Lonicera japonica HOM05D006315 ORTHO05D008052 3.1e-17 93.6 53 75.5
arahy.Tifrunner.gnm1.ann1.T3AGRQ Arachis hypogaea HOM05D006315 ORTHO05D008052 6.8e-12 75.9 55 63.6
BolC7t42010H Brassica oleracea HOM05D004896 ORTHO05D028223 7.5e-11 72.4 138 42.8
EL10Ac4g09000 Beta vulgaris HOM05D006315 ORTHO05D008052 4.8e-10 69.7 38 84.2
Lj5A470G9 Lonicera japonica HOM05D006315 ORTHO05D008052 4.1e-09 66.6 129 37.2
Lj5A532G11 Lonicera japonica HOM05D006315 ORTHO05D008052 1.2e-08 65.1 129 37.2
C09p41080 Brassica napus HOM05D004896 ORTHO05D028223 1.3e-07 61.6 38 78.9
BolC9t56987H Brassica oleracea HOM05D004896 ORTHO05D028223 1.3e-07 61.6 38 78.9


User provided reference genes

Program Settings