Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_022130 Daucus carota HOM05D003086 ORTHO05D003347 3.6e-51 204.5 97 100.0
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 2.7e-14 82.0 62 62.9
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 6.0e-14 80.9 51 64.7
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 7.9e-14 80.5 62 62.9
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 7.9e-14 80.5 53 67.9
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 8.7e-13 77.0 61 59.0
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 1.9e-12 75.9 60 61.7
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 1.9e-12 75.9 52 61.5
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 3.3e-12 75.1 62 51.6
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 3.3e-12 75.1 61 60.7
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 5.7e-12 74.3 48 68.8
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 6.3e-11 70.9 53 60.4
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 6.3e-11 70.9 53 67.9
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 6.3e-11 70.9 51 56.9
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 8.2e-11 70.5 65 52.3
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 8.2e-11 70.5 48 70.8
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 1.1e-10 70.1 63 55.6
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 3.1e-10 68.6 53 60.4
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 3.1e-10 68.6 54 57.4
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 3.1e-10 68.6 53 60.4
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.1e-10 68.2 55 56.4
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 4.1e-10 68.2 55 56.4
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 5.3e-10 67.8 46 67.4
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 1.2e-09 66.6 49 63.3
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 1.2e-09 66.6 53 56.6
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 1.2e-09 66.6 54 57.4
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.5e-09 66.2 54 59.3
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.5e-09 66.2 46 71.7
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 2.0e-09 65.9 66 53.0
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.0e-09 65.9 47 61.7
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 2.0e-09 65.9 48 64.6
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 2.0e-09 65.9 53 60.4
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 3.4e-09 65.1 54 55.6
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 3.4e-09 65.1 48 62.5
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 3.4e-09 65.1 45 66.7
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 4.5e-09 64.7 51 58.8
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 4.5e-09 64.7 44 65.9
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 7.6e-09 63.9 47 59.6
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 1.0e-08 63.5 43 65.1
MBI16_g32085_MAGBIO Magnolia biondii HOM05D007433 ORTHO05D009199 1.0e-08 63.5 46 65.2
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 1.0e-08 63.5 46 63.0
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.0e-08 63.5 46 60.9
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 1.3e-08 63.2 46 58.7
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.3e-08 63.2 48 60.4
Lj3g0004362 Lotus japonicus HOM05D003086 ORTHO05D003347 1.3e-08 63.2 43 65.1
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 1.7e-08 62.8 81 40.7
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 1.7e-08 62.8 46 63.0
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 3.8e-08 61.6 45 55.6
Phvul.010G115200 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 3.8e-08 61.6 39 66.7
BcaC09g50920 Brassica carinata HOM05D003086 ORTHO05D003347 5.0e-08 61.2 83 36.1
C01p19250 Brassica napus HOM05D003086 ORTHO05D003347 5.0e-08 61.2 83 36.1
BolC1t01850H Brassica oleracea HOM05D003086 ORTHO05D003347 5.0e-08 61.2 83 36.1
BraA01t01474Z Brassica rapa HOM05D003086 ORTHO05D003347 5.0e-08 61.2 83 36.1
BraA08t32861Z Brassica rapa HOM05D003086 ORTHO05D003347 5.0e-08 61.2 83 36.1
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 8.5e-08 60.5 45 62.2
ClCG05G026590 Citrullus lanatus HOM05D007433 ORTHO05D009199 1.1e-07 60.1 64 48.4
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 1.1e-07 60.1 42 64.3
Migut.N01532 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.4e-07 59.7 45 60.0
Nn6g34518 Nelumbo nucifera HOM05D007433 ORTHO05D009199 1.4e-07 59.7 61 50.8
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 1.4e-07 59.7 42 64.3
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 1.9e-07 59.3 42 59.5
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 1.9e-07 59.3 44 56.8
Sed0005155 Sechium edule HOM05D007433 ORTHO05D009199 1.9e-07 59.3 64 46.9
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 1.9e-07 59.3 45 53.3
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 1.9e-07 59.3 45 53.3
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 1.9e-07 59.3 45 53.3
HPP92_014802 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.9e-07 59.3 46 56.5
MELO3C016834.2 Cucumis melo HOM05D007433 ORTHO05D009199 2.5e-07 58.9 64 46.9
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 3.2e-07 58.5 60 50.0
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 3.2e-07 58.5 44 56.8
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 3.2e-07 58.5 50 54.0
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 3.2e-07 58.5 46 54.3
SalBow3G3175 Salvia bowleyana HOM05D003086 ORTHO05D003347 3.2e-07 58.5 42 59.5
Aqoxy6G02471 Aquilegia oxysepala HOM05D007433 ORTHO05D009199 4.2e-07 58.2 46 60.9
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 4.2e-07 58.2 62 48.4
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 4.2e-07 58.2 41 61.0
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 4.2e-07 58.2 45 51.1
SEGI_15730 Sequoiadendron giganteum HOM05D003086 ORTHO05D003347 4.2e-07 58.2 37 70.3
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 4.2e-07 58.2 63 46.0
BcaNung01108 Brassica carinata HOM05D003086 ORTHO05D003347 5.5e-07 57.8 61 41.0
CsaV3_4G035230 Cucumis sativus L. HOM05D007433 ORTHO05D009199 5.5e-07 57.8 61 47.5
Lalb_Chr04g0254361 Lupinus albus HOM05D003086 ORTHO05D003347 5.5e-07 57.8 46 60.9
CiPaw.07G172700 Carya illinoinensis HOM05D007433 ORTHO05D009199 7.2e-07 57.4 64 51.6
Cc10_g07560 Coffea canephora HOM05D007433 ORTHO05D009199 7.2e-07 57.4 81 37.0
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 9.3e-07 57.0 60 48.3
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 9.3e-07 57.0 51 51.0
Os03g0675500 Oryza sativa ssp. japonica HOM05D007433 ORTHO05D003347 1.2e-06 56.6 50 54.0
Peaxi162Scf00340g00061 Petunia axillaris HOM05D007433 ORTHO05D009199 1.2e-06 56.6 86 41.9
Sopen05g028970 Solanum pennellii HOM05D003086 ORTHO05D003347 1.2e-06 56.6 38 57.9
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 1.6e-06 56.2 44 59.1
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 1.6e-06 56.2 54 48.1
QL12p038428 Quercus lobata HOM05D007433 ORTHO05D009199 1.6e-06 56.2 46 58.7
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 2.1e-06 55.8 44 59.1
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 2.1e-06 55.8 44 59.1
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 2.1e-06 55.8 42 57.1
CANSAT25G0221 Cannabis sativa HOM05D007433 ORTHO05D009199 2.7e-06 55.5 97 37.1
Gohir.A06G025100 Gossypium hirsutum HOM05D007433 ORTHO05D009199 2.7e-06 55.5 62 46.8
Gohir.D06G022200 Gossypium hirsutum HOM05D007433 ORTHO05D009199 2.7e-06 55.5 62 46.8
Gorai.010G026800 Gossypium raimondii HOM05D007433 ORTHO05D009199 2.7e-06 55.5 62 46.8
SalBow7G1382 Salvia bowleyana HOM05D007433 ORTHO05D009199 2.7e-06 55.5 60 45.0
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 3.6e-06 55.1 42 64.3
Carub.0007s1706 Capsella rubella HOM05D003086 ORTHO05D003347 4.6e-06 54.7 54 42.6
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 4.6e-06 54.7 52 46.2
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 4.6e-06 54.7 53 45.3
Dinv44935 Davidia involucrata HOM05D007433 ORTHO05D009199 4.6e-06 54.7 46 54.3
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 4.6e-06 54.7 59 44.1
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 4.6e-06 54.7 43 60.5
Thhalv10015091m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 4.6e-06 54.7 43 48.8
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 4.6e-06 54.7 54 50.0
Atru.chr13.862 Acer truncatum HOM05D007433 ORTHO05D009199 6.1e-06 54.3 72 40.3
Ah.13g070480 Amaranthus hybridus HOM05D003086 ORTHO05D003347 6.1e-06 54.3 51 58.8
BcaNung05697 Brassica carinata HOM05D003086 ORTHO05D003347 6.1e-06 54.3 72 40.3
A09p28400 Brassica napus HOM05D003086 ORTHO05D003347 6.1e-06 54.3 50 52.0
Duzib264G0228 Durio zibethinus HOM05D007433 ORTHO05D000169 6.1e-06 54.3 41 56.1
Prupe.1G419900 Prunus persica HOM05D007433 ORTHO05D009199 6.1e-06 54.3 72 44.4
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 6.1e-06 54.3 53 49.1
TAR628G1336 Trochodendron aralioides HOM05D007433 ORTHO05D009199 6.1e-06 54.3 57 49.1
Zm00001eb217410 Zea mays HOM05D007433 ORTHO05D009199 6.1e-06 54.3 68 42.6
Zm00001eb268340 Zea mays HOM05D028875 ORTHO05D003347 6.1e-06 54.3 52 48.1
Aqoxy7G00049 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 7.9e-06 53.9 37 62.2
BcaB01g02737 Brassica carinata HOM05D003086 ORTHO05D003347 7.9e-06 53.9 56 48.2
BcaC01g04661 Brassica carinata HOM05D003086 ORTHO05D003347 7.9e-06 53.9 56 48.2
A03p29280 Brassica napus HOM05D003086 ORTHO05D003347 7.9e-06 53.9 56 48.2
C03p35200 Brassica napus HOM05D003086 ORTHO05D003347 7.9e-06 53.9 56 48.2
BolC3t15831H Brassica oleracea HOM05D003086 ORTHO05D003347 7.9e-06 53.9 56 48.2
BraA03t12124Z Brassica rapa HOM05D003086 ORTHO05D003347 7.9e-06 53.9 56 48.2
BraA09t38405Z Brassica rapa HOM05D003086 ORTHO05D003347 7.9e-06 53.9 51 51.0
CiPaw.08G051700 Carya illinoinensis HOM05D007433 ORTHO05D009199 7.9e-06 53.9 46 60.9
Dinv39208 Davidia involucrata HOM05D007433 ORTHO05D009199 7.9e-06 53.9 81 37.0
Sabra14G0073900 Salix brachista HOM05D003086 ORTHO05D003347 7.9e-06 53.9 42 59.5


User provided reference genes

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