Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021961 Daucus carota HOM05D005520 ORTHO05D006633 4.5e-106 387.9 189 100.0
THA.LOC104825832 Tarenaya hassleriana HOM05D005520 ORTHO05D006633 2.7e-66 255.8 188 67.0
Dinv15795 Davidia involucrata HOM05D005520 ORTHO05D006633 4.3e-64 248.4 187 65.8
Sc18g0003610 Simmondsia chinensis HOM05D005520 ORTHO05D006633 6.2e-63 244.6 188 67.0
CiPaw.06G167100 Carya illinoinensis HOM05D005520 ORTHO05D006633 8.0e-63 244.2 194 63.9
HanXRQChr03g0069991 Helianthus annuus HOM05D005520 ORTHO05D006633 1.8e-62 243.0 196 62.2
Lsat_1_v5_gn_9_112480 Lactuca sativa HOM05D005520 ORTHO05D006633 3.1e-62 242.3 193 62.7
Peaxi162Scf00429g00622 Petunia axillaris HOM05D005520 ORTHO05D006633 4.0e-62 241.9 184 66.8
Actinidia34369 Actinidia chinensis HOM05D005520 ORTHO05D006633 5.2e-62 241.5 191 66.0
Dinv42222 Davidia involucrata HOM05D005520 ORTHO05D006633 5.2e-62 241.5 195 63.1
CSS0014981 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 6.8e-62 241.1 195 62.1
Thhalv10011740m.g Eutrema salsugineum HOM05D005520 ORTHO05D006633 2.0e-61 239.6 187 61.5
MSTRG.16689 Avicennia marina HOM05D005520 ORTHO05D006633 4.4e-61 238.4 187 63.6
EL10Ac8g19365 Beta vulgaris HOM05D005520 ORTHO05D006633 5.8e-61 238.0 185 63.2
Carub.0001s3909 Capsella rubella HOM05D005520 ORTHO05D006633 7.5e-61 237.7 190 60.5
Cfa004647 Carpinus fangiana HOM05D005520 ORTHO05D006633 2.2e-60 236.1 192 62.0
Haze_10245 Corylus avellana HOM05D005520 ORTHO05D006633 2.9e-60 235.7 192 62.5
Manes.10G081300 Manihot esculenta HOM05D005520 ORTHO05D006633 3.7e-60 235.3 195 62.1
Sp1g36760 Schrenkiella parvula HOM05D005520 ORTHO05D006633 4.9e-60 235.0 188 60.1
CAN.G689.10 Capsicum annuum HOM05D005520 ORTHO05D006633 6.4e-60 234.6 202 59.9
Gohir.D04G160500 Gossypium hirsutum HOM05D005520 ORTHO05D006633 6.4e-60 234.6 183 63.9
Gorai.012G148200 Gossypium raimondii HOM05D005520 ORTHO05D006633 6.4e-60 234.6 183 63.9
PSO541G2579 Papaver somniferum HOM05D005520 ORTHO05D006633 6.4e-60 234.6 181 63.0
Prupe.8G141400 Prunus persica HOM05D005520 ORTHO05D006633 8.3e-60 234.2 198 60.6
Rhsim05G0090000 Rhododendron simsii HOM05D005520 ORTHO05D006633 8.3e-60 234.2 198 61.1
Solyc11g071960.2 Solanum lycopersicum HOM05D005520 ORTHO05D006633 8.3e-60 234.2 200 60.0
AL1G57420 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 1.4e-59 233.4 187 59.4
Migut.F01600 Erythranthe guttata HOM05D005520 ORTHO05D006633 1.9e-59 233.0 191 61.3
TWI14G1052 Tripterygium wilfordii HOM05D005520 ORTHO05D006633 1.9e-59 233.0 195 59.5
GSVIVG01037859001 Vitis vinifera HOM05D005520 ORTHO05D006633 1.9e-59 233.0 191 63.4
PSO675G3202 Papaver somniferum HOM05D005520 ORTHO05D006633 2.4e-59 232.6 181 61.9
Duzib052G0352 Durio zibethinus HOM05D005520 ORTHO05D006633 3.2e-59 232.3 184 63.0
Gohir.A04G118800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 3.2e-59 232.3 183 62.8
Eucgr.G01264 Eucalyptus grandis HOM05D005520 ORTHO05D006633 4.1e-59 231.9 198 60.6
Nitab4.5_0008364g0030 Nicotiana tabacum HOM05D005520 ORTHO05D006633 5.4e-59 231.5 200 60.0
Nitab4.5_0000158g0130 Nicotiana tabacum HOM05D005520 ORTHO05D006633 7.0e-59 231.1 183 65.0
Rhsim11G0154200 Rhododendron simsii HOM05D005520 ORTHO05D006633 9.2e-59 230.7 196 59.7
RcHm_v2.0_Chr6g0253041 Rosa chinensis HOM05D005520 ORTHO05D006633 1.6e-58 229.9 191 61.3
Sopen11g029630 Solanum pennellii HOM05D005520 ORTHO05D006633 1.6e-58 229.9 200 59.5
BraA08t32384Z Brassica rapa HOM05D005520 ORTHO05D006633 2.1e-58 229.6 187 59.4
C03p89340 Brassica napus HOM05D005520 ORTHO05D006633 2.7e-58 229.2 188 57.4
BolC3t21249H Brassica oleracea HOM05D005520 ORTHO05D006633 2.7e-58 229.2 188 57.4
COL.COLO4_32538 Corchorus olitorius HOM05D005520 ORTHO05D006633 2.7e-58 229.2 211 57.3
A08p03510 Brassica napus HOM05D005520 ORTHO05D006633 3.5e-58 228.8 187 58.8
CARHR039940 Cardamine hirsuta HOM05D005520 ORTHO05D006633 4.6e-58 228.4 188 58.5
MD10G1103100 Malus domestica HOM05D005520 ORTHO05D006633 6.0e-58 228.0 193 60.6
Ciclev10029310m.g Citrus clementina HOM05D005520 ORTHO05D006633 7.8e-58 227.6 194 59.8
Potri.009G090200 Populus trichocarpa HOM05D005520 ORTHO05D006633 1.3e-57 226.9 204 58.8
Lj5A217G90 Lonicera japonica HOM05D005520 ORTHO05D006633 1.7e-57 226.5 121 85.1
PGSC0003DMG400002983 Solanum tuberosum HOM05D005520 ORTHO05D006633 3.0e-57 225.7 131 78.6
Cpa.g.sc106.74 Carica papaya HOM05D005520 ORTHO05D006633 6.6e-57 224.6 203 56.7
Sed0007262 Sechium edule HOM05D005520 ORTHO05D006633 6.6e-57 224.6 189 61.4
PGR042G2710 Punica granatum HOM05D005520 ORTHO05D006633 8.6e-57 224.2 196 59.2
MD05G1097000 Malus domestica HOM05D005520 ORTHO05D006633 1.1e-56 223.8 197 57.4
arahy.Tifrunner.gnm1.ann1.ZQ2RMB Arachis hypogaea HOM05D005520 ORTHO05D006633 9.5e-56 220.7 196 58.2
Sabra09G0069800 Salix brachista HOM05D005520 ORTHO05D006633 2.1e-55 219.5 198 57.1
TAR625G0105 Trochodendron aralioides HOM05D000641 ORTHO05D006633 2.1e-55 219.5 126 80.2
FAN20G2059 Fragaria x ananassa HOM05D005520 ORTHO05D006633 3.6e-55 218.8 214 54.7
Migut.B00427 Erythranthe guttata HOM05D005520 ORTHO05D006633 6.2e-55 218.0 117 82.9
Gorai.013G049600 Gossypium raimondii HOM05D005520 ORTHO05D006633 8.1e-55 217.6 183 60.7
QL11p031741 Quercus lobata HOM05D005520 ORTHO05D006633 8.1e-55 217.6 265 47.2
Gohir.D13G044800 Gossypium hirsutum HOM05D005520 ORTHO05D006633 1.1e-54 217.2 184 60.9
SGA_v2.0_scaffold225G43026 Striga asiatica HOM05D005520 ORTHO05D006633 1.1e-54 217.2 141 73.0
ECA240G0181 Erigeron canadensis HOM05D005520 ORTHO05D006633 1.4e-54 216.9 116 83.6
VMungo0251G2197 Vigna mungo HOM05D005520 ORTHO05D006633 1.4e-54 216.9 192 57.8
Medtr8g045480 Medicago truncatula HOM05D005520 ORTHO05D006633 1.8e-54 216.5 188 56.9
unitig_37.g12800 Utricularia gibba HOM05D005520 ORTHO05D006633 2.3e-54 216.1 189 59.3
Lj3g0017538 Lotus japonicus HOM05D005520 ORTHO05D006633 4.0e-54 215.3 195 59.0
TPR.G14598 Trifolium pratense HOM05D005520 ORTHO05D006633 4.0e-54 215.3 188 57.4
Lalb_Chr24g0402091 Lupinus albus HOM05D005520 ORTHO05D006633 6.8e-54 214.5 192 56.2
Cc02_g19680 Coffea canephora HOM05D005520 ORTHO05D006633 1.2e-53 213.8 263 47.1
SalBow6G1186 Salvia bowleyana HOM05D005520 ORTHO05D006633 2.0e-53 213.0 138 72.5
CDE04G3180 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 2.6e-53 212.6 190 57.4
Medtr1g050465 Medicago truncatula HOM05D005520 ORTHO05D006633 3.4e-53 212.2 188 55.9
TPR.G18583 Trifolium pratense HOM05D005520 ORTHO05D006633 7.5e-53 211.1 190 56.3
Psat4g180760 Pisum sativum HOM05D005520 ORTHO05D006633 9.9e-53 210.7 191 56.0
arahy.Tifrunner.gnm1.ann1.DF92AY Arachis hypogaea HOM05D005520 ORTHO05D006633 1.3e-52 210.3 211 54.0
SalBow6G6323 Salvia bowleyana HOM05D005520 ORTHO05D006633 1.3e-52 210.3 225 52.0
Phvul.003G276100 Phaseolus vulgaris HOM05D005520 ORTHO05D006633 2.2e-52 209.5 192 56.2
RcHm_v2.0_Chr6g0253051 Rosa chinensis HOM05D005520 ORTHO05D006633 3.7e-52 208.8 130 72.3
ClCG10G010520 Citrullus lanatus HOM05D005520 ORTHO05D006633 4.9e-52 208.4 190 59.5
Lj4g0000264 Lotus japonicus HOM05D005520 ORTHO05D006633 2.1e-50 203.0 187 57.2
SEGI_34662 Sequoiadendron giganteum HOM05D005520 ORTHO05D006633 2.7e-50 202.6 132 70.5
CDE07G0521 Ceratophyllum demersum HOM05D005520 ORTHO05D006633 3.5e-50 202.2 120 74.2
CANSAT25G2379 Cannabis sativa HOM05D005520 ORTHO05D006633 7.8e-50 201.1 189 55.0
Migut.B00429 Erythranthe guttata HOM05D005520 ORTHO05D009373 2.3e-49 199.5 172 58.1
BcaB04g17288 Brassica carinata HOM05D005520 ORTHO05D006633 3.9e-49 198.7 197 53.3
Zm00001eb007440 Zea mays HOM05D005520 ORTHO05D006633 3.9e-49 198.7 116 74.1
Aa31LG10G4210 Aethionema arabicum HOM05D001821 ORTHO05D006633 8.6e-49 197.6 213 50.2
FAN15G3606 Fragaria x ananassa HOM05D005520 ORTHO05D006633 4.3e-48 195.3 194 55.7
HPP92_023672 Vanilla planifolia HOM05D005520 ORTHO05D006633 1.2e-47 193.7 197 50.8
HPP92_023689 Vanilla planifolia HOM05D005520 ORTHO05D006633 2.1e-47 193.0 197 50.8
Pp3c2_36820 Physcomitrium patens HOM05D005520 ORTHO05D006633 4.7e-47 191.8 121 66.9
RhsimUnG0125400 Rhododendron simsii HOM05D005520 ORTHO05D006633 4.7e-47 191.8 194 54.6
Mapoly0036s0053 Marchantia polymorpha HOM05D005520 ORTHO05D006633 1.8e-46 189.9 138 65.9
SMO172G0176 Selaginella moellendorffii HOM05D005520 ORTHO05D006633 2.0e-45 186.4 115 69.6
FAN24G1644 Fragaria x ananassa HOM05D005520 ORTHO05D006633 2.6e-45 186.0 203 53.2
AT1G49880 Arabidopsis thaliana HOM05D005520 ORTHO05D006633 4.2e-43 178.7 156 56.4
Atru.chr5.2403 Acer truncatum HOM05D005520 ORTHO05D006633 6.0e-42 174.9 95 82.1
Glyma.13G199600 Glycine max HOM05D005520 ORTHO05D006633 8.7e-41 171.0 192 49.5
RcHm_v2.0_Chr6g0253221 Rosa chinensis HOM05D005520 ORTHO05D006633 8.7e-41 171.0 131 64.9
CBR_g2851 Chara braunii HOM05D005520 ORTHO05D006633 2.5e-40 169.5 113 61.9
Actinidia27983 Actinidia chinensis HOM05D005520 ORTHO05D006633 1.4e-38 163.7 185 49.2
Pp3c19_18310 Physcomitrium patens HOM05D005520 ORTHO05D006633 1.2e-37 160.6 125 56.8
Oeu009678.2 Olea europaea HOM05D005520 ORTHO05D006633 9.9e-37 157.5 251 39.8
Psat7g087120 Pisum sativum HOM05D005520 ORTHO05D006633 2.2e-36 156.4 161 50.3
CBR_g31027 Chara braunii HOM05D005520 ORTHO05D006633 8.4e-36 154.5 177 43.5
vmacro01971 Vaccinium macrocarpon HOM05D005520 ORTHO05D006633 8.4e-36 154.5 123 61.0
Psat6g139520 Pisum sativum HOM05D005520 ORTHO05D006633 9.3e-35 151.0 155 48.4
AUR62022505 Chenopodium quinoa HOM05D005520 ORTHO05D006633 4.6e-34 148.7 173 49.7
Cre03.g173200 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 1.8e-30 136.7 107 54.2
FvH4_2g03990 Fragaria vesca HOM05D005520 ORTHO05D006633 9.0e-30 134.4 130 54.6
Thecc.02G114500 Theobroma cacao HOM05D005520 ORTHO05D006633 4.2e-27 125.6 123 54.5
CBR_g38847 Chara braunii HOM05D005520 ORTHO05D006633 7.1e-27 124.8 98 51.0
Potri.001G296000 Populus trichocarpa HOM05D005520 ORTHO05D006633 2.1e-26 123.2 204 36.8
Ca_24141_v3 Cicer arietinum L. HOM05D005520 ORTHO05D006633 7.9e-26 121.3 154 45.5
PRCOL_00001319 Prasinoderma coloniale HOM05D000442 ORTHO05D001718 1.0e-25 120.9 116 45.7
Aqoxy6G02716 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 1.3e-25 120.6 140 49.3
Medtr0857s0010 Medicago truncatula HOM05D005520 ORTHO05D006633 3.9e-25 119.0 63 81.0
CSS0022898 Camellia sinensis var. sinensis HOM05D005520 ORTHO05D006633 5.1e-25 118.6 95 61.1
Hund12620 Selenicereus undatus HOM05D005520 ORTHO05D006633 8.7e-25 117.9 257 34.6
MCO01G292 Micromonas commoda HOM05D005520 ORTHO05D006633 9.6e-24 114.4 96 50.0
Haze_26784 Corylus avellana HOM05D005520 ORTHO05D006633 1.4e-22 110.5 100 41.0
Aqoxy6G02727 Aquilegia oxysepala HOM05D005520 ORTHO05D006633 1.8e-22 110.2 62 75.8
Ciclev10029975m.g Citrus clementina HOM05D005520 ORTHO05D006633 4.0e-22 109.0 59 83.1
Cre14.g633000 Chlamydomonas reinhardtii HOM05D005520 ORTHO05D006633 4.5e-21 105.5 100 44.0
Nn1g07564 Nelumbo nucifera HOM05D005520 ORTHO05D006633 9.9e-21 104.4 138 42.8
Cfa024926 Carpinus fangiana HOM05D000137 ORTHO05D122446 5.5e-19 98.6 93 40.9
MCO01G319 Micromonas commoda HOM05D005520 ORTHO05D006633 2.7e-18 96.3 104 43.3
MELO3C017991.2 Cucumis melo HOM05D005520 ORTHO05D006633 5.3e-14 82.0 110 47.3
Glyma.15G237900 Glycine max HOM05D005520 ORTHO05D006633 4.9e-12 75.5 110 41.8
SHI05087 Sapria himalayana HOM05D005520 ORTHO05D006633 4.9e-12 75.5 42 71.4
AL1G58430 Arabidopsis lyrata HOM05D005520 ORTHO05D006633 6.1e-10 68.6 105 37.1
A06p03510 Brassica napus HOM05D005520 ORTHO05D006633 1.0e-09 67.8 36 80.6
BraA06t23559Z Brassica rapa HOM05D005520 ORTHO05D006633 1.0e-09 67.8 36 80.6
ATR0165G041 Amborella trichopoda HOM05D005520 ORTHO05D006633 1.8e-09 67.0 117 38.5
CsaV3_4G000440 Cucumis sativus L. HOM05D005520 ORTHO05D006633 3.9e-09 65.9 110 43.6
Os03g0206300 Oryza sativa ssp. japonica HOM05D005520 ORTHO05D006633 5.1e-09 65.5 46 58.7
Aqoxy6G02726 Aquilegia oxysepala HOM05D000001 ORTHO05D077907 5.3e-06 55.5 112 33.9


User provided reference genes

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