Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 0.0e+00 1513.0 985 100.0
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 1.7e-108 398.3 1013 38.7
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 7.3e-107 392.9 999 36.8
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 2.5e-99 367.9 1016 35.8
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 4.9e-95 353.6 1031 35.5
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 7.3e-91 339.7 1061 35.1
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 1.6e-85 322.0 1010 34.0
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 1.6e-85 322.0 1010 34.0
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 1.1e-78 299.3 1025 35.9
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 2.4e-78 298.1 1045 33.0
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 5.5e-78 297.0 994 35.6
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 1.6e-77 295.4 994 33.1
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 2.7e-77 294.7 1024 31.6
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 6.0e-77 293.5 1022 32.9
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 5.1e-76 290.4 1010 31.9
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 1.1e-73 282.7 1069 33.1
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 5.3e-73 280.4 1036 30.9
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 1.2e-72 279.3 1107 30.6
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 4.9e-71 273.9 1049 31.0
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 3.3e-67 261.2 1000 36.7
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 7.4e-67 260.0 1067 30.1
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 1.1e-65 256.1 1055 28.5
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 3.4e-64 251.1 1020 33.3
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.4e-62 245.7 1052 29.0
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 2.5e-62 245.0 1017 31.9
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 3.5e-61 241.1 999 29.9
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 4.6e-61 240.7 1037 33.9
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 6.1e-61 240.4 1012 29.0
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 8.7e-60 236.5 1034 30.5
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 1.9e-59 235.3 1021 31.8
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 8.2e-58 229.9 1017 31.1
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 5.3e-57 227.3 1024 29.6
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 1.5e-56 225.7 1034 32.7
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 1.7e-55 222.2 390 44.9
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 2.2e-55 221.9 1087 30.9
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 4.2e-54 217.6 1036 34.7
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 2.1e-53 215.3 986 28.9
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 4.6e-53 214.2 1000 28.4
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 4.6e-53 214.2 1055 27.2
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 6.1e-53 213.8 1016 32.0
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 7.9e-53 213.4 1052 29.0
FvH4_2g03070 Fragaria vesca HOM05D004628 ORTHO05D005166 1.4e-52 212.6 1025 31.1
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 2.3e-52 211.8 1018 28.3
FAN24G0611 Fragaria x ananassa HOM05D004628 ORTHO05D005166 3.3e-51 208.0 1008 31.1
Lalb_Chr18g0056371 Lupinus albus HOM05D004628 ORTHO05D005166 2.2e-50 205.3 998 30.8
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 2.8e-50 204.9 1020 27.5
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 4.8e-50 204.1 1003 30.0
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.4e-49 201.8 1029 30.4
TPR.G37037 Trifolium pratense HOM05D004628 ORTHO05D005166 9.1e-49 199.9 989 29.3
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 1.5e-48 199.1 1013 29.7
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.6e-48 198.4 1008 30.4
FAN15G3289 Fragaria x ananassa HOM05D004628 ORTHO05D005166 1.0e-47 196.4 1025 28.6
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 1.7e-47 195.7 1008 27.8
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 2.2e-47 195.3 1031 29.1
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 1.1e-46 193.0 1018 26.7
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 1.9e-46 192.2 993 29.5
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 2.5e-46 191.8 993 29.5
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 3.2e-46 191.4 1036 29.6
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 7.2e-46 190.3 1064 28.9
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 3.6e-45 188.0 1018 29.7
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 1.0e-44 186.4 973 30.2
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 2.3e-44 185.3 1021 28.8
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 3.0e-44 184.9 1036 26.3
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 3.0e-44 184.9 1018 29.1
SGA_v2.0_scaffold519G52683 Striga asiatica HOM05D004628 ORTHO05D005166 1.1e-43 183.0 1014 31.1
arahy.Tifrunner.gnm1.ann1.V3P7C9 Arachis hypogaea HOM05D000513 ORTHO05D005786 9.7e-43 179.9 1031 26.5
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 1.7e-42 179.1 993 27.8
arahy.Tifrunner.gnm1.ann1.EFUN8Y Arachis hypogaea HOM05D004628 ORTHO05D005166 2.2e-42 178.7 1027 27.7
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 8.2e-42 176.8 1014 27.6
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 3.5e-40 171.4 994 26.7
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 2.9e-39 168.3 1030 27.6
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 1.6e-37 162.5 1024 31.4
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 3.0e-36 158.3 1043 26.8
Potri.001G289100 Populus trichocarpa HOM05D004628 ORTHO05D005166 2.6e-35 155.2 929 28.6
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 4.8e-34 151.0 1034 25.5
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 3.1e-33 148.3 301 40.5
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 9.1e-33 146.7 474 33.1
PSO447G0365 Papaver somniferum HOM05D004628 ORTHO05D005166 9.1e-33 146.7 1031 25.4
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 2.0e-32 145.6 1005 26.4
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 5.9e-32 144.1 1043 28.2
PSO210G3573 Papaver somniferum HOM05D004628 ORTHO05D005166 1.7e-31 142.5 1022 27.2
arahy.Tifrunner.gnm1.ann1.L5X8FN Arachis hypogaea HOM05D004628 ORTHO05D005166 1.1e-30 139.8 1024 26.9
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 2.5e-30 138.7 330 37.6
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 7.2e-30 137.1 1015 31.4
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 9.4e-30 136.7 330 36.7
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 9.4e-30 136.7 330 36.7
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 2.7e-29 135.2 355 36.3
arahy.Tifrunner.gnm1.ann1.R9786Y Arachis hypogaea HOM05D004628 ORTHO05D005166 2.7e-29 135.2 1027 27.4
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 1.8e-28 132.5 515 32.8
Lalb_Chr15g0087631 Lupinus albus HOM05D004628 ORTHO05D005166 1.8e-28 132.5 1045 26.3
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 4.0e-28 131.3 160 51.9
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 4.1e-25 121.3 500 33.6
Duzib132G1149 Durio zibethinus HOM05D004628 ORTHO05D005166 4.5e-24 117.9 192 46.4
unitig_744.g24202 Utricularia gibba HOM05D004628 ORTHO05D005166 4.5e-24 117.9 314 36.3
CAN.G289.65 Capsicum annuum HOM05D004628 ORTHO05D005166 7.7e-24 117.1 267 38.2
HanXRQChr04g0101671 Helianthus annuus HOM05D004628 ORTHO05D005166 8.5e-23 113.6 989 23.7
Psat4g006640 Pisum sativum HOM05D004628 ORTHO05D005166 1.1e-22 113.2 1046 28.4
CARHR106490 Cardamine hirsuta HOM05D004628 ORTHO05D005166 6.1e-21 107.5 988 24.6
Carub.0003s2996 Capsella rubella HOM05D004628 ORTHO05D005166 1.4e-20 106.3 1018 25.5
BraA07t28247Z Brassica rapa HOM05D004628 ORTHO05D005166 1.8e-20 105.9 335 31.6
arahy.Tifrunner.gnm1.ann1.53VTV0 Arachis hypogaea HOM05D004628 ORTHO05D005166 3.0e-20 105.1 295 32.9
A07p04590 Brassica napus HOM05D004628 ORTHO05D005166 5.2e-20 104.4 335 31.3
Sp3g29460 Schrenkiella parvula HOM05D004628 ORTHO05D005166 1.5e-19 102.8 1020 25.8
AL3G52350 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 1.3e-18 99.8 348 31.6
CAN.G289.56 Capsicum annuum HOM05D004628 ORTHO05D005166 6.3e-18 97.4 320 34.1
Atru.chr1.1899 Acer truncatum HOM05D004628 ORTHO05D005166 1.1e-17 96.7 176 47.7
GSVIVG01037038001 Vitis vinifera HOM05D004628 ORTHO05D005166 1.8e-17 95.9 78 67.9
BcaC06g36138 Brassica carinata HOM05D004628 ORTHO05D005166 2.4e-17 95.5 338 30.5
C07p07410 Brassica napus HOM05D004628 ORTHO05D005166 2.4e-17 95.5 338 30.5
BolC7t41157H Brassica oleracea HOM05D004628 ORTHO05D005166 2.4e-17 95.5 338 30.5
AT2G16270 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 4.1e-17 94.7 344 31.4
THA.LOC104819526 Tarenaya hassleriana HOM05D004628 ORTHO05D005166 4.1e-17 94.7 1050 23.4
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 1.2e-16 93.2 1042 27.8
CARHR017100 Cardamine hirsuta HOM05D004628 ORTHO05D005166 4.5e-16 91.3 323 30.7
Aa31LG8G13660 Aethionema arabicum HOM05D004628 ORTHO05D005166 7.7e-16 90.5 345 31.9
AL1G28790 Arabidopsis lyrata HOM05D004628 ORTHO05D005166 7.7e-16 90.5 1034 24.0
Lsat_1_v5_gn_5_129280 Lactuca sativa HOM05D004628 ORTHO05D005166 1.0e-15 90.1 271 32.8
Psat6g212600 Pisum sativum HOM05D004628 ORTHO05D005166 2.9e-15 88.6 299 32.4
Thhalv10022556m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 5.0e-15 87.8 997 27.2
Nitab4.5_0008331g0010 Nicotiana tabacum HOM05D004628 ORTHO05D005166 8.6e-15 87.0 167 43.7
CAN.G289.57 Capsicum annuum HOM05D004628 ORTHO05D005166 5.6e-14 84.3 204 37.7
Thhalv10006806m.g Eutrema salsugineum HOM05D004628 ORTHO05D005166 4.7e-13 81.3 1016 22.8
arahy.Tifrunner.gnm1.ann1.GD5ZZG Arachis hypogaea HOM05D004628 ORTHO05D005166 8.0e-13 80.5 106 49.1
CAN.G1627.6 Capsicum annuum HOM05D004628 ORTHO05D005166 8.0e-13 80.5 94 58.5
CAN.G411.101 Capsicum annuum HOM05D002370 ORTHO05D005166 1.0e-12 80.1 353 32.0
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 3.0e-12 78.6 131 45.8
CAN.G289.55 Capsicum annuum HOM05D004628 ORTHO05D005166 5.2e-12 77.8 374 31.6
Nitab4.5_0000575g0060 Nicotiana tabacum HOM05D004628 ORTHO05D005166 5.7e-11 74.3 113 47.8
SEGI_16491 Sequoiadendron giganteum HOM05D004628 ORTHO05D005166 9.8e-11 73.6 294 29.9
BraA06t24423Z Brassica rapa HOM05D004628 ORTHO05D005166 1.7e-10 72.8 1021 25.9
Carub.0001s1637 Capsella rubella HOM05D004628 ORTHO05D005166 1.7e-10 72.8 1045 24.3
A06p12620 Brassica napus HOM05D004628 ORTHO05D005166 1.1e-09 70.1 1016 25.6
AT1G16630 Arabidopsis thaliana HOM05D004628 ORTHO05D005166 1.8e-09 69.3 1004 22.6
C05p14910 Brassica napus HOM05D004628 ORTHO05D005166 2.4e-09 68.9 1006 25.9
CAN.G1164.3 Capsicum annuum HOM05D009846 ORTHO05D002235 2.4e-09 68.9 73 64.4
FvH4_6g23772 Fragaria vesca HOM05D004628 ORTHO05D005166 4.1e-09 68.2 80 55.0
Nn5g30859 Nelumbo nucifera HOM05D004628 ORTHO05D005166 7.0e-09 67.4 119 41.2
Sp1g14770 Schrenkiella parvula HOM05D004628 ORTHO05D005166 7.0e-09 67.4 1033 24.7
Nn1g01808 Nelumbo nucifera HOM05D004628 ORTHO05D005166 1.2e-08 66.6 87 46.0
CAN.G1627.4 Capsicum annuum HOM05D004628 ORTHO05D005166 2.7e-08 65.5 40 75.0
FAN09G3722 Fragaria x ananassa HOM05D004628 ORTHO05D005166 4.6e-08 64.7 65 56.9
Duzib192G1063 Durio zibethinus HOM05D008208 ORTHO05D010143 1.3e-07 63.2 264 29.5
BcaC05g25526 Brassica carinata HOM05D004628 ORTHO05D005166 3.0e-07 62.0 337 30.3
MD09G1201700 Malus domestica HOM05D008208 ORTHO05D010143 8.6e-07 60.5 266 30.8
Os03g0672400 Oryza sativa ssp. japonica HOM05D058439 ORTHO05D005166 1.1e-06 60.1 273 35.9
Peaxi162Scf00038g01129 Petunia axillaris HOM05D008208 ORTHO05D010143 1.5e-06 59.7 243 28.8
Lsat_1_v5_gn_0_18160 Lactuca sativa HOM05D004628 ORTHO05D005166 1.9e-06 59.3 73 47.9
MD09G1201800 Malus domestica HOM05D008208 ORTHO05D010143 2.5e-06 58.9 277 28.9
ATR0705G064 Amborella trichopoda HOM05D008208 ORTHO05D010143 5.6e-06 57.8 85 47.1
Gohir.A10G065000 Gossypium hirsutum HOM05D008208 ORTHO05D010143 5.6e-06 57.8 265 30.9
PSO210G2837 Papaver somniferum HOM05D029104 ORTHO05D010143 5.6e-06 57.8 237 29.1


User provided reference genes

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