Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 3.9e-296 1020.8 533 100.0
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 8.0e-84 315.5 374 52.4
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 1.8e-80 304.3 484 45.2
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 5.4e-80 302.8 504 45.6
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 7.3e-77 292.4 432 45.6
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 2.6e-74 283.9 452 44.5
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 9.2e-72 275.4 333 52.0
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 2.7e-71 273.9 512 40.0
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 3.0e-70 270.4 389 48.1
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 3.9e-70 270.0 296 53.0
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 5.0e-70 269.6 408 46.1
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 1.9e-69 267.7 448 42.4
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 4.7e-68 263.1 494 40.9
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 8.1e-68 262.3 444 43.0
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 4.0e-67 260.0 325 51.7
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 2.0e-66 257.7 352 48.6
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 9.8e-66 255.4 335 46.6
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.1e-64 251.9 500 39.8
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 1.4e-64 251.5 496 40.1
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.4e-64 251.5 496 40.1
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 1.4e-64 251.5 335 46.0
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 4.1e-64 250.0 498 40.2
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 5.4e-64 249.6 461 39.5
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 9.2e-64 248.8 335 49.6
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 1.6e-63 248.1 387 43.4
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 2.1e-63 247.7 374 46.8
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 3.5e-63 246.9 413 42.6
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 7.8e-63 245.7 263 56.3
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 1.3e-62 245.0 370 44.1
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 1.7e-62 244.6 435 40.5
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 2.3e-62 244.2 378 43.9
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 1.5e-61 241.5 273 53.1
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 2.5e-61 240.7 200 66.0
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 2.8e-60 237.3 503 36.0
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 3.6e-60 236.9 315 48.9
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 6.2e-60 236.1 537 37.1
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 2.3e-59 234.2 502 38.6
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 8.9e-59 232.3 311 48.9
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 4.4e-58 229.9 424 40.3
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 4.4e-58 229.9 385 43.1
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 1.7e-57 228.0 324 48.1
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 4.9e-57 226.5 355 43.9
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 8.4e-57 225.7 379 43.5
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 8.4e-57 225.7 509 37.1
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 2.4e-56 224.2 326 46.9
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 3.2e-56 223.8 417 42.4
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 7.1e-56 222.6 359 45.7
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 2.7e-55 220.7 485 37.7
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 4.6e-55 219.9 494 38.1
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 6.0e-55 219.5 472 40.3
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 3.0e-54 217.2 497 37.2
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 3.9e-54 216.9 373 43.4
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 3.9e-54 216.9 344 42.7
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 6.6e-54 216.1 233 53.6
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 1.9e-53 214.5 494 36.2
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 3.3e-53 213.8 288 47.2
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 1.6e-52 211.5 500 36.4
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 2.1e-52 211.1 321 45.2
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 2.1e-52 211.1 511 36.0
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 2.1e-52 211.1 426 40.1
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 2.1e-52 211.1 506 37.2
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 2.1e-52 211.1 363 41.0
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 3.6e-52 210.3 345 43.5
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 2.0e-50 204.5 472 34.5
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 2.6e-50 204.1 335 41.8
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 3.4e-50 203.8 375 39.7
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 9.9e-50 202.2 541 35.1
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 9.9e-50 202.2 328 43.9
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 1.7e-49 201.4 334 44.3
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 3.8e-49 200.3 497 34.8
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 3.8e-49 200.3 230 52.6
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 1.4e-48 198.4 439 35.8
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 3.2e-48 197.2 278 47.1
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 1.2e-47 195.3 389 38.0
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 1.6e-47 194.9 392 38.0
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 2.7e-47 194.1 377 40.6
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 6.0e-47 193.0 314 41.1
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 2.3e-46 191.0 485 35.5
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 2.3e-46 191.0 305 45.2
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 3.0e-46 190.7 522 33.5
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 6.6e-46 189.5 385 39.7
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 5.6e-45 186.4 371 39.6
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 5.6e-45 186.4 371 39.4
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 7.3e-45 186.0 345 41.2
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 9.6e-45 185.7 367 40.1
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 1.6e-44 184.9 387 41.1
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 2.1e-44 184.5 359 38.7
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 2.1e-44 184.5 229 49.8
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 6.2e-44 183.0 291 43.6
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 8.1e-44 182.6 502 33.5
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 8.1e-44 182.6 507 32.5
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 2.4e-43 181.0 410 34.9
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 4.0e-43 180.3 381 39.4
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 5.3e-43 179.9 335 40.9
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 5.3e-43 179.9 353 39.4
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 9.0e-43 179.1 321 40.8
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 5.8e-42 176.4 367 38.4
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 7.6e-42 176.0 354 39.0
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 1.4e-40 171.8 383 36.6
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 1.4e-40 171.8 383 36.6
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 1.2e-39 168.7 330 39.4
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 2.7e-39 167.5 177 54.2
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 1.7e-38 164.9 375 38.1
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 3.6e-36 157.1 350 38.3
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 1.7e-33 148.3 349 35.0
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 5.5e-32 143.3 305 38.4
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 9.3e-32 142.5 359 34.5
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 1.3e-30 138.7 506 31.4
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 1.9e-29 134.8 420 31.7
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 2.5e-29 134.4 415 30.4
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 2.5e-29 134.4 192 46.9
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 7.4e-29 132.9 391 32.5
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 4.9e-25 120.2 409 28.1
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 1.1e-24 119.0 327 33.3
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 4.2e-24 117.1 93 67.7
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 1.3e-22 112.1 377 30.2
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 2.3e-22 111.3 189 43.4
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 1.4e-19 102.1 335 34.9
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 1.8e-19 101.7 113 49.6
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 3.2e-16 90.9 304 33.9
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 1.2e-15 89.0 87 56.3
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 3.5e-15 87.4 138 47.8
HanXRQChr10g0297671 Helianthus annuus HOM05D004882 ORTHO05D005551 9.7e-13 79.3 88 55.7
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 2.2e-12 78.2 79 49.4
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 3.8e-09 67.4 58 63.8
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 5.1e-06 57.0 57 52.6
SEGI_06913 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 5.1e-06 57.0 47 59.6
BolC8t48423H Brassica oleracea HOM05D004882 ORTHO05D005551 8.8e-06 56.2 127 33.1


User provided reference genes

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