Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021903 Daucus carota HOM05D000331 ORTHO05D002018 4.4e-40 167.5 86 100.0
DCAR_021904 Daucus carota HOM05D000331 ORTHO05D002018 7.5e-24 113.6 81 71.6
Actinidia02400 Actinidia chinensis HOM05D000331 ORTHO05D002018 7.7e-21 103.6 73 65.8
Ciclev10027825m.g Citrus clementina HOM05D000331 ORTHO05D002018 1.0e-20 103.2 73 64.4
Dinv16009 Davidia involucrata HOM05D000331 ORTHO05D002018 5.0e-20 100.9 73 65.8
GSVIVG01012532001 Vitis vinifera HOM05D000331 ORTHO05D002018 1.5e-19 99.4 74 64.9
vmacro01868 Vaccinium macrocarpon HOM05D000331 ORTHO05D002018 1.9e-19 99.0 73 65.8
Duzib052G0965 Durio zibethinus HOM05D000331 ORTHO05D002018 2.5e-19 98.6 82 58.5
Duzib132G0773 Durio zibethinus HOM05D000331 ORTHO05D002018 3.2e-19 98.2 73 61.6
Nitab4.5_0000088g0030 Nicotiana tabacum HOM05D000331 ORTHO05D002018 3.2e-19 98.2 73 63.0
Oeu059904.1 Olea europaea HOM05D000331 ORTHO05D002018 3.2e-19 98.2 73 60.3
Atru.chr6.1299 Acer truncatum HOM05D000331 ORTHO05D002018 5.5e-19 97.4 73 61.6
Lj9C347G7 Lonicera japonica HOM05D000331 ORTHO05D002018 5.5e-19 97.4 81 61.7
PGSC0003DMG400010675 Solanum tuberosum HOM05D000331 ORTHO05D002018 5.5e-19 97.4 68 69.1
Hma1.2p1_0435F.1_g152700 Hydrangea macrophylla HOM05D000331 ORTHO05D002018 7.2e-19 97.1 73 63.0
Oeu059903.1 Olea europaea HOM05D000331 ORTHO05D002018 7.2e-19 97.1 73 58.9
Manes.07G041100 Manihot esculenta HOM05D000331 ORTHO05D002018 9.4e-19 96.7 82 57.3
SGA_v2.0_scaffold219G42558 Striga asiatica HOM05D000331 ORTHO05D002018 9.4e-19 96.7 65 70.8
TAR376G0912 Trochodendron aralioides HOM05D000331 ORTHO05D002018 9.4e-19 96.7 73 61.6
Solyc11g043210.3 Solanum lycopersicum HOM05D000331 ORTHO05D002018 1.2e-18 96.3 73 63.0
CAN.G504.84 Capsicum annuum HOM05D000331 ORTHO05D002018 1.6e-18 95.9 76 60.5
Cpa.g.sc20.20 Carica papaya HOM05D000331 ORTHO05D002018 1.6e-18 95.9 73 61.6
TAR628G0314 Trochodendron aralioides HOM05D000331 ORTHO05D002018 1.6e-18 95.9 73 61.6
CSS0013397 Camellia sinensis var. sinensis HOM05D000331 ORTHO05D002018 2.1e-18 95.5 73 63.0
COL.COLO4_32409 Corchorus olitorius HOM05D000331 ORTHO05D002018 2.1e-18 95.5 73 60.3
Gohir.D13G049100 Gossypium hirsutum HOM05D000331 ORTHO05D002018 2.1e-18 95.5 73 63.0
Gorai.013G054900 Gossypium raimondii HOM05D000331 ORTHO05D002018 2.1e-18 95.5 73 63.0
Cfa004837 Carpinus fangiana HOM05D000331 ORTHO05D002018 3.6e-18 94.7 73 63.0
Cc02_g20790 Coffea canephora HOM05D000331 ORTHO05D002018 4.7e-18 94.4 73 64.4
CiPaw.05G028700 Carya illinoinensis HOM05D000331 ORTHO05D002018 8.0e-18 93.6 73 60.3
Oeu063547.1 Olea europaea HOM05D000331 ORTHO05D002018 8.0e-18 93.6 73 57.5
Thecc.02G127800 Theobroma cacao HOM05D000331 ORTHO05D002018 8.0e-18 93.6 73 58.9
MSTRG.27817 Avicennia marina HOM05D000331 ORTHO05D002018 1.0e-17 93.2 73 61.6
Nitab4.5_0008268g0020 Nicotiana tabacum HOM05D000331 ORTHO05D002018 1.0e-17 93.2 73 61.6
Potri.007G118300 Populus trichocarpa HOM05D000331 ORTHO05D002018 1.4e-17 92.8 82 57.3
Hma1.2p1_0908F.1_g235520 Hydrangea macrophylla HOM05D000331 ORTHO05D002018 1.8e-17 92.4 73 61.6
CSS0046653 Camellia sinensis var. sinensis HOM05D000331 ORTHO05D002018 2.3e-17 92.0 73 60.3
SGA_v2.0_scaffold337G49165 Striga asiatica HOM05D000331 ORTHO05D002018 2.3e-17 92.0 73 56.2
Lj5C229G23 Lonicera japonica HOM05D000331 ORTHO05D002018 3.0e-17 91.7 83 57.8
Oeu010521.1 Olea europaea HOM05D000331 ORTHO05D002018 3.0e-17 91.7 73 54.8
Peaxi162Scf00152g00829 Petunia axillaris HOM05D000331 ORTHO05D002018 3.0e-17 91.7 73 57.5
Sabra07G0095600 Salix brachista HOM05D000331 ORTHO05D002018 4.0e-17 91.3 82 56.1
Gohir.A03G177700 Gossypium hirsutum HOM05D000331 ORTHO05D002018 5.2e-17 90.9 82 56.1
Gohir.D02G201400 Gossypium hirsutum HOM05D000331 ORTHO05D002018 5.2e-17 90.9 82 56.1
Nn5g29832 Nelumbo nucifera HOM05D000331 ORTHO05D002018 5.2e-17 90.9 73 58.9
Sopen11g019650 Solanum pennellii HOM05D000331 ORTHO05D002018 5.2e-17 90.9 73 61.6
MD10G1055800 Malus domestica HOM05D000331 ORTHO05D002018 6.8e-17 90.5 73 61.6
Solyc01g106050.4 Solanum lycopersicum HOM05D000331 ORTHO05D002018 6.8e-17 90.5 76 59.2
CAN.G1041.36 Capsicum annuum HOM05D000331 ORTHO05D002018 8.8e-17 90.1 73 57.5
Sopen01g048430 Solanum pennellii HOM05D000331 ORTHO05D002018 8.8e-17 90.1 76 59.2
Gorai.005G226100 Gossypium raimondii HOM05D000331 ORTHO05D002018 1.2e-16 89.7 82 54.9
Prupe.8G071400 Prunus persica HOM05D000331 ORTHO05D002018 1.5e-16 89.4 73 58.9
Peaxi162Scf00299g00549 Petunia axillaris HOM05D000331 ORTHO05D002018 2.0e-16 89.0 75 61.3
Rhsim11G0141700 Rhododendron simsii HOM05D000331 ORTHO05D002018 2.0e-16 89.0 73 58.9
QL11p025665 Quercus lobata HOM05D000331 ORTHO05D002018 2.6e-16 88.6 73 60.3
SalBow6G0885 Salvia bowleyana HOM05D000331 ORTHO05D002018 2.6e-16 88.6 73 58.9
CiPaw.06G158600 Carya illinoinensis HOM05D000331 ORTHO05D002018 3.4e-16 88.2 82 52.4
MD05G1049000 Malus domestica HOM05D000331 ORTHO05D002018 3.4e-16 88.2 73 58.9
Gorai.008G017900 Gossypium raimondii HOM05D000331 ORTHO05D002018 4.4e-16 87.8 73 56.2
Nitab4.5_0001773g0030 Nicotiana tabacum HOM05D000331 ORTHO05D002018 4.4e-16 87.8 76 57.9
Duzib248G0980 Durio zibethinus HOM05D000331 ORTHO05D002018 5.7e-16 87.4 82 53.7
Migut.N01101 Erythranthe guttata HOM05D000331 ORTHO05D002018 5.7e-16 87.4 74 58.1
Gohir.A12G016966 Gossypium hirsutum HOM05D000331 ORTHO05D002018 1.3e-15 86.3 73 56.2
Haze_10495 Corylus avellana HOM05D000331 ORTHO05D002018 1.7e-15 85.9 82 53.7
Sabra17G0028500 Salix brachista HOM05D000331 ORTHO05D002018 2.2e-15 85.5 82 53.7
ECA240G3290 Erigeron canadensis HOM05D000331 ORTHO05D002018 2.8e-15 85.1 74 58.1
Potri.017G041800 Populus trichocarpa HOM05D000331 ORTHO05D002018 2.8e-15 85.1 82 52.4
Nitab4.5_0007950g0010 Nicotiana tabacum HOM05D000331 ORTHO05D002018 3.7e-15 84.7 73 57.5
HPP92_007001 Vanilla planifolia HOM05D000331 ORTHO05D002018 3.7e-15 84.7 73 57.5
ClCG09G016210 Citrullus lanatus HOM05D000331 ORTHO05D002018 4.8e-15 84.3 73 54.8
Eucgr.I02611 Eucalyptus grandis HOM05D000331 ORTHO05D002018 4.8e-15 84.3 74 56.8
Manes.10G097300 Manihot esculenta HOM05D000331 ORTHO05D002018 1.1e-14 83.2 73 54.8
Actinidia00311 Actinidia chinensis HOM05D001232 ORTHO05D002018 1.4e-14 82.8 82 52.4
PGR142G4428 Punica granatum HOM05D000331 ORTHO05D002018 1.4e-14 82.8 73 56.2
Sed0001354 Sechium edule HOM05D000331 ORTHO05D002018 1.4e-14 82.8 73 52.1
Aqoxy5G01353 Aquilegia oxysepala HOM05D000331 ORTHO05D002018 5.4e-14 80.9 75 54.7
Sed0026197 Sechium edule HOM05D000331 ORTHO05D002018 5.4e-14 80.9 73 52.1
TWI14G0887 Tripterygium wilfordii HOM05D000331 ORTHO05D002018 7.0e-14 80.5 74 52.7
ECA234G3483 Erigeron canadensis HOM05D000331 ORTHO05D002018 1.2e-13 79.7 74 59.5
Oeu027057.1 Olea europaea HOM05D000331 ORTHO05D002018 2.7e-13 78.6 73 54.8
Oeu027059.2 Olea europaea HOM05D000331 ORTHO05D002018 2.7e-13 78.6 73 54.8
RcHm_v2.0_Chr6g0270491 Rosa chinensis HOM05D000331 ORTHO05D002018 2.7e-13 78.6 73 52.1
Actinidia28025 Actinidia chinensis HOM05D000331 ORTHO05D002018 4.5e-13 77.8 74 54.1
Ah.01g023860 Amaranthus hybridus HOM05D000331 ORTHO05D002018 1.3e-12 76.3 73 54.8
TWI59G0920 Tripterygium wilfordii HOM05D000331 ORTHO05D002018 1.3e-12 76.3 74 50.0
MBI16_g06009_MAGBIO Magnolia biondii HOM05D000331 ORTHO05D002018 1.7e-12 75.9 73 53.4
MBI16_g30316_MAGBIO Magnolia biondii HOM05D000331 ORTHO05D002018 1.7e-12 75.9 74 51.4
ClCG10G009650 Citrullus lanatus HOM05D000331 ORTHO05D002018 3.8e-12 74.7 73 52.1
Hund06471 Selenicereus undatus HOM05D000331 ORTHO05D002018 5.0e-12 74.3 73 52.1
THA.LOC104820169 Tarenaya hassleriana HOM05D000331 ORTHO05D002018 5.0e-12 74.3 68 54.4
FAN20G3059 Fragaria x ananassa HOM05D000331 ORTHO05D002018 6.6e-12 73.9 74 51.4
FAN24G3179 Fragaria x ananassa HOM05D000331 ORTHO05D002018 6.6e-12 73.9 74 51.4
arahy.Tifrunner.gnm1.ann1.67PN3V Arachis hypogaea HOM05D000331 ORTHO05D002018 8.6e-12 73.6 63 63.5
arahy.Tifrunner.gnm1.ann1.JYI6HY Arachis hypogaea HOM05D000331 ORTHO05D002018 8.6e-12 73.6 63 63.5
HanXRQChr16g0514511 Helianthus annuus HOM05D000331 ORTHO05D002018 8.6e-12 73.6 66 59.1
EL10Ac9g22058 Beta vulgaris HOM05D000331 ORTHO05D002018 1.1e-11 73.2 73 53.4
FAN27G2938 Fragaria x ananassa HOM05D000331 ORTHO05D002018 1.1e-11 73.2 74 51.4
SalBow6G4297 Salvia bowleyana HOM05D000331 ORTHO05D002018 1.5e-11 72.8 74 51.4
THA.LOC104804420 Tarenaya hassleriana HOM05D000331 ORTHO05D002018 1.5e-11 72.8 68 52.9
Ah.01g007350 Amaranthus hybridus HOM05D000331 ORTHO05D002018 1.9e-11 72.4 73 50.7
AUR62030938 Chenopodium quinoa HOM05D000331 ORTHO05D002018 1.9e-11 72.4 73 50.7
CsaV3_4G014740 Cucumis sativus L. HOM05D000331 ORTHO05D002018 1.9e-11 72.4 73 50.7
ATR0767G113 Amborella trichopoda HOM05D000331 ORTHO05D002018 2.5e-11 72.0 81 49.4
MSTRG.5289 Avicennia marina HOM05D000331 ORTHO05D002018 2.5e-11 72.0 66 50.0
CsaV3_7G007070 Cucumis sativus L. HOM05D000331 ORTHO05D002018 4.2e-11 71.2 68 50.0
HanXRQChr03g0073971 Helianthus annuus HOM05D000331 ORTHO05D002018 4.2e-11 71.2 76 53.9
Os01g0920400 Oryza sativa ssp. japonica HOM05D000331 ORTHO05D002018 4.2e-11 71.2 73 54.8
SalBow6G0447 Salvia bowleyana HOM05D000331 ORTHO05D002018 4.2e-11 71.2 74 51.4
FAN15G2926 Fragaria x ananassa HOM05D000331 ORTHO05D002018 5.5e-11 70.9 74 50.0
Lalb_Chr18g0060391 Lupinus albus HOM05D000331 ORTHO05D002018 7.2e-11 70.5 63 60.3
MELO3C018587.2 Cucumis melo HOM05D000331 ORTHO05D002018 9.5e-11 70.1 66 50.0
CDE01G0130 Ceratophyllum demersum HOM05D000331 ORTHO05D002018 1.6e-10 69.3 73 50.7
CDE02G0778 Ceratophyllum demersum HOM05D000331 ORTHO05D002018 2.1e-10 68.9 73 47.9
AUR62027096 Chenopodium quinoa HOM05D000331 ORTHO05D002018 2.1e-10 68.9 73 49.3
Sc18g0007090 Simmondsia chinensis HOM05D000331 ORTHO05D002018 2.8e-10 68.6 65 53.8
Lalb_Chr15g0090321 Lupinus albus HOM05D000331 ORTHO05D002018 3.6e-10 68.2 63 58.7
Ca_00168_v3 Cicer arietinum L. HOM05D000331 ORTHO05D002018 6.1e-10 67.4 63 57.1
Glyma.07G182900 Glycine max HOM05D000331 ORTHO05D002018 6.1e-10 67.4 63 57.1
Rhsim05G0101000 Rhododendron simsii HOM05D000331 ORTHO05D002018 6.1e-10 67.4 73 49.3
Lalb_Chr20g0122931 Lupinus albus HOM05D000331 ORTHO05D002018 8.0e-10 67.0 63 55.6
unitig_60.g25472 Utricularia gibba HOM05D000331 ORTHO05D002018 8.0e-10 67.0 76 47.4
Medtr2g009690 Medicago truncatula HOM05D000331 ORTHO05D002018 1.0e-09 66.6 63 55.6
Phvul.006G201400 Phaseolus vulgaris HOM05D000331 ORTHO05D002018 1.0e-09 66.6 63 57.1
Glyma.13G256100 Glycine max HOM05D000331 ORTHO05D002018 1.4e-09 66.2 63 57.1
Glyma.15G058700 Glycine max HOM05D000331 ORTHO05D002018 1.4e-09 66.2 63 57.1
TPR.G9509 Trifolium pratense HOM05D000331 ORTHO05D002018 1.8e-09 65.9 63 55.6
VMungo0540G2460 Vigna mungo HOM05D000331 ORTHO05D002018 1.8e-09 65.9 63 57.1
Aqoxy6G00825 Aquilegia oxysepala HOM05D000331 ORTHO05D002018 2.3e-09 65.5 66 54.5
PSO170G5783 Papaver somniferum HOM05D000331 ORTHO05D002018 3.0e-09 65.1 75 46.7
PSO210G3308 Papaver somniferum HOM05D000331 ORTHO05D002018 3.0e-09 65.1 75 46.7
unitig_61.g26049 Utricularia gibba HOM05D000331 ORTHO05D002018 4.0e-09 64.7 81 43.2
Lj6g0019027 Lotus japonicus HOM05D000331 ORTHO05D002018 5.2e-09 64.3 63 55.6
PSO675G5707 Papaver somniferum HOM05D000331 ORTHO05D002018 5.2e-09 64.3 77 50.6
Psat1g213760 Pisum sativum HOM05D000331 ORTHO05D002018 6.8e-09 63.9 63 54.0
Migut.B00540 Erythranthe guttata HOM05D000331 ORTHO05D002018 1.2e-08 63.2 72 44.4
Lsat_1_v5_gn_5_110221 Lactuca sativa HOM05D000331 ORTHO05D002018 1.5e-08 62.8 75 50.7
SalBow6G6379 Salvia bowleyana HOM05D000331 ORTHO05D002018 2.0e-08 62.4 70 47.1
arahy.Tifrunner.gnm1.ann1.K65K48 Arachis hypogaea HOM05D000331 ORTHO05D002018 2.6e-08 62.0 63 52.4
Glyma.08G067100 Glycine max HOM05D000331 ORTHO05D002018 2.6e-08 62.0 65 55.4
HanXRQChr09g0246311 Helianthus annuus HOM05D000331 ORTHO05D002018 2.6e-08 62.0 76 47.4
Gohir.D12G017700 Gossypium hirsutum HOM05D000331 ORTHO05D002018 3.4e-08 61.6 46 56.5
Zm00001eb364470 Zea mays HOM05D000331 ORTHO05D002018 3.4e-08 61.6 75 49.3
Lsat_1_v5_gn_9_115801 Lactuca sativa HOM05D000331 ORTHO05D002018 1.3e-07 59.7 75 52.0
VMungo0251G3578 Vigna mungo HOM05D000331 ORTHO05D002018 1.7e-07 59.3 63 50.8
arahy.Tifrunner.gnm1.ann1.7I1FTX Arachis hypogaea HOM05D000331 ORTHO05D002018 2.2e-07 58.9 63 50.8
Glyma.04G131700 Glycine max HOM05D000331 ORTHO05D002018 2.2e-07 58.9 63 52.4
Phvul.002G213900 Phaseolus vulgaris HOM05D000331 ORTHO05D002018 3.7e-07 58.2 63 54.0
arahy.Tifrunner.gnm1.ann1.SS7XL7 Arachis hypogaea HOM05D000331 ORTHO05D002018 4.9e-07 57.8 65 49.2
TAR625G1467 Trochodendron aralioides HOM05D000331 ORTHO05D002018 6.3e-07 57.4 43 53.5
AUR62003686 Chenopodium quinoa HOM05D000331 ORTHO05D002018 8.3e-07 57.0 49 49.0
Hund14077 Selenicereus undatus HOM05D000331 ORTHO05D002018 1.4e-06 56.2 49 49.0
Sc07g0000350 Simmondsia chinensis HOM05D000331 ORTHO05D002018 1.4e-06 56.2 40 60.0
Ah.03g143280 Amaranthus hybridus HOM05D000331 ORTHO05D002018 2.4e-06 55.5 49 46.9
AUR62017998 Chenopodium quinoa HOM05D000331 ORTHO05D002018 3.1e-06 55.1 46 50.0
vmacro19608 Vaccinium macrocarpon HOM05D000331 ORTHO05D002018 7.0e-06 53.9 54 55.6


User provided reference genes

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