Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 8.6e-295 1016.1 483 100.0
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 6.9e-244 847.0 488 80.9
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 4.5e-243 844.3 484 82.9
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 8.5e-242 840.1 495 78.2
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 7.2e-241 837.0 495 77.8
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 7.2e-241 837.0 483 80.1
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 1.0e-239 833.2 486 80.0
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 1.1e-238 829.7 484 79.3
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 8.2e-237 823.5 487 79.1
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 1.8e-236 822.4 491 78.2
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 2.4e-236 822.0 487 79.3
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 2.4e-236 822.0 483 80.3
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 2.4e-236 822.0 484 79.5
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 2.4e-236 822.0 491 78.8
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 4.1e-236 821.2 483 79.3
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 6.9e-236 820.5 483 79.3
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 9.1e-236 820.1 483 79.5
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 3.4e-235 818.1 483 78.5
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 4.5e-235 817.8 491 78.6
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 5.9e-235 817.4 483 79.1
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 5.9e-235 817.4 483 79.1
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 1.3e-234 816.2 484 79.5
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.3e-234 816.2 483 78.1
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.3e-234 816.2 483 78.3
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 1.3e-234 816.2 484 79.1
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 2.9e-234 815.1 483 78.1
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 2.9e-234 815.1 484 79.3
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 5.0e-234 814.3 487 77.2
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 6.5e-234 813.9 484 78.5
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 6.5e-234 813.9 483 77.6
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 1.4e-233 812.8 483 77.8
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 3.2e-233 811.6 487 78.2
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 4.2e-233 811.2 483 78.7
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 5.5e-233 810.8 483 77.6
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 1.2e-232 809.7 484 77.9
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 1.2e-232 809.7 498 76.9
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 1.2e-232 809.7 484 78.7
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 1.6e-232 809.3 483 77.2
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 8.0e-232 807.0 483 78.5
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 1.8e-231 805.8 487 77.4
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 2.0e-230 802.4 483 77.0
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 2.0e-230 802.4 486 77.6
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 3.3e-230 801.6 484 77.9
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 3.3e-230 801.6 519 74.2
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 4.4e-230 801.2 484 76.7
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 4.4e-230 801.2 473 79.5
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 5.7e-230 800.8 484 76.4
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 5.7e-230 800.8 487 76.2
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 7.4e-230 800.4 491 76.2
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 1.1e-228 796.6 484 76.9
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 2.4e-228 795.4 483 76.8
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 2.4e-228 795.4 485 75.9
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 9.1e-228 793.5 483 76.4
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 1.6e-227 792.7 572 67.7
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 1.0e-226 790.0 484 77.3
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 1.3e-226 789.6 509 73.9
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 1.7e-226 789.3 488 76.2
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 2.2e-226 788.9 459 79.5
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 2.9e-226 788.5 469 77.2
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 5.0e-226 787.7 485 75.9
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 8.5e-226 786.9 491 76.4
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 3.2e-225 785.0 484 76.4
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 4.2e-225 784.6 483 76.8
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 5.5e-225 784.3 483 74.3
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 9.4e-225 783.5 483 75.4
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 6.1e-224 780.8 484 75.6
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 8.0e-224 780.4 484 74.8
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 2.3e-223 778.9 484 75.8
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 2.3e-223 778.9 483 74.7
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 4.0e-223 778.1 488 75.4
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 4.0e-223 778.1 484 75.8
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 3.3e-222 775.0 485 74.2
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 9.7e-222 773.5 489 75.1
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 3.1e-220 768.5 578 65.4
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 7.0e-220 767.3 483 73.1
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 2.7e-219 765.4 483 72.9
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 7.7e-219 763.8 484 73.1
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 1.7e-218 762.7 483 72.5
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 3.8e-218 761.5 483 72.5
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 5.0e-218 761.1 483 72.9
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 8.5e-218 760.4 483 72.9
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 8.5e-218 760.4 483 72.0
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 8.5e-218 760.4 483 72.0
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 1.5e-217 759.6 483 72.3
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.9e-217 759.2 468 76.5
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 2.5e-217 758.8 483 72.7
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 7.2e-217 757.3 484 73.6
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 9.4e-217 756.9 483 72.0
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 1.6e-216 756.1 488 73.2
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 4.7e-216 754.6 483 72.0
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 1.4e-215 753.1 567 65.1
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 3.0e-215 751.9 507 69.4
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 3.0e-215 751.9 486 71.6
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 4.0e-215 751.5 483 72.0
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 5.2e-215 751.1 483 71.6
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 6.3e-213 744.2 483 74.1
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 8.6e-210 733.8 540 65.4
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 6.3e-205 717.6 493 68.8
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 8.3e-205 717.2 418 81.8
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 1.2e-203 713.4 572 61.0
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 1.6e-203 713.0 507 67.3
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 5.0e-202 708.0 411 80.0
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 9.5e-201 703.7 597 58.5
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 1.5e-198 696.4 483 68.3
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 1.0e-194 683.7 451 72.3
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 2.1e-184 649.4 374 80.5
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 4.7e-184 648.3 411 72.7
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 6.2e-184 647.9 432 70.8
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 4.9e-181 638.3 487 62.4
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 1.5e-177 626.7 495 60.2
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 4.3e-177 625.2 488 60.7
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 7.6e-174 614.4 373 74.5
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 2.2e-173 612.8 360 80.0
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 1.4e-172 610.1 373 74.3
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 9.0e-167 590.9 342 79.8
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 1.4e-164 583.6 327 83.8
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.4e-159 567.0 327 81.0
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 2.9e-157 559.3 327 81.0
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 1.4e-156 557.0 530 52.5
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 9.6e-153 544.3 328 78.7
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 1.7e-149 533.5 333 75.1
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 6.4e-149 531.6 324 75.9
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 1.4e-148 530.4 360 70.0
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 1.4e-140 503.8 351 70.1
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 5.5e-140 501.9 299 77.9
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 7.7e-134 481.5 327 70.6
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 9.7e-105 384.8 222 78.4
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 1.1e-103 381.3 489 42.3
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 1.9e-100 370.5 379 47.5
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 2.8e-91 340.1 231 66.7
Ca_29817_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 4.7e-91 339.3 210 76.2
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 1.8e-87 327.4 430 42.6
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 6.6e-77 292.4 159 83.6
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 6.6e-77 292.4 159 83.6
Ca_25384_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.5e-76 291.2 186 74.7
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.1e-74 283.5 159 82.4
unitig_26.g9585 Utricularia gibba HOM05D004862 ORTHO05D005841 6.6e-69 265.8 145 81.4
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.1e-58 231.9 431 33.4
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 2.7e-46 190.7 106 83.0
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 5.6e-44 183.0 106 79.2
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.3e-43 181.8 94 90.4
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 3.6e-43 180.3 93 90.3
AagrBONN_evm.TU.Sc2ySwM_344.4621 Anthoceros agrestis HOM05D004862 ORTHO05D005841 1.3e-40 171.8 142 57.0
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 1.9e-39 167.9 119 68.9
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 1.9e-36 157.9 91 79.1
Actinidia00239 Actinidia chinensis HOM05D004862 ORTHO05D005841 8.4e-24 115.9 87 65.5
TAR628G0087 Trochodendron aralioides HOM05D004862 ORTHO05D005841 1.1e-23 115.5 67 74.6
CsaV3_7G014950 Cucumis sativus L. HOM05D004862 ORTHO05D005841 6.3e-19 99.8 65 64.6
Cfa010153 Carpinus fangiana HOM05D004862 ORTHO05D005841 8.2e-19 99.4 70 67.1
Potri.003G022701 Populus trichocarpa HOM05D004862 ORTHO05D005841 3.1e-18 97.4 76 63.2
unitig_26.g9586 Utricularia gibba HOM05D004862 ORTHO05D005841 1.5e-17 95.1 69 65.2
MCO05G371 Micromonas commoda HOM05D004862 ORTHO05D267887 9.4e-07 59.3 125 34.4
Dinv28090 Davidia involucrata HOM05D000259 ORTHO05D000155 1.6e-06 58.5 34 70.6


User provided reference genes

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