Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1918.3 994 100.0
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1706.4 996 87.7
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1701.0 994 87.2
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 1688.7 996 87.1
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1687.9 998 87.0
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1673.7 995 85.7
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 1667.1 995 86.1
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1666.0 1002 85.4
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 1664.0 996 86.0
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1662.5 996 85.9
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 1661.4 1003 85.2
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1657.9 1003 85.2
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1656.3 994 84.5
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1655.2 994 85.4
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1652.5 994 84.3
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 1652.1 1003 85.1
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1651.7 1000 83.7
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1649.8 994 84.0
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1649.4 984 85.4
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1648.3 994 85.2
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1647.5 994 84.9
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1647.1 995 84.5
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1646.3 996 84.7
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1644.4 1036 82.8
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1644.0 1040 81.5
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1642.5 999 83.6
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1641.7 1001 84.1
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1641.3 997 84.8
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1639.8 999 84.5
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1639.4 1005 83.3
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1638.6 997 84.4
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1636.7 995 85.9
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1634.8 996 82.0
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1634.8 996 84.6
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1634.0 1004 83.7
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1633.2 994 83.5
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1632.8 994 83.4
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1631.3 996 83.4
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1627.5 1003 81.7
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1627.1 1000 84.3
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1624.4 994 82.2
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1619.8 1005 83.4
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1619.0 999 83.3
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1618.6 1003 82.4
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1617.1 1001 83.2
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1617.1 994 82.0
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1617.1 996 81.8
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1617.1 997 84.2
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1616.7 994 82.6
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1616.7 1033 80.7
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1615.9 995 83.2
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1615.1 997 82.2
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1614.7 1001 83.2
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1614.7 998 82.1
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 1614.4 1001 83.2
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1613.6 994 82.9
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1613.2 998 82.5
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1613.2 1003 82.2
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1613.2 1003 82.0
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1613.2 999 83.0
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1608.6 996 82.1
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1607.4 920 87.1
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1606.3 998 82.4
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1603.6 996 80.6
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1600.9 991 81.8
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1600.1 996 82.0
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1599.7 994 81.3
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1598.9 997 82.7
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1594.3 1005 80.4
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1590.1 1027 81.2
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1583.2 1007 81.5
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1582.0 997 81.1
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1580.1 998 82.6
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1578.9 1006 81.4
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1578.1 1004 81.6
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1577.4 1002 81.2
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1575.8 1009 81.0
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1575.1 1002 81.1
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1574.7 1009 80.8
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1571.6 920 84.6
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1570.4 1001 80.6
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1568.1 998 80.6
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1567.0 1002 80.8
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1567.0 1002 80.8
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1566.2 1020 80.0
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1565.1 1004 80.7
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1562.4 998 80.4
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1554.3 1003 80.9
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1546.2 995 77.9
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1537.3 920 82.7
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1532.3 944 82.1
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1532.3 1159 71.8
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1496.9 894 84.0
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1489.9 1025 77.4
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1483.4 992 77.7
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1474.9 998 74.2
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1465.3 993 74.2
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1453.7 994 73.9
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1444.9 998 75.5
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1269.2 982 71.2
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1231.1 993 63.4
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1227.2 988 64.6
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1203.0 990 62.6
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1199.9 787 76.7
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1188.3 991 62.0
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1164.1 1007 61.7
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1157.9 677 86.0
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1115.9 670 84.2
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 0.0e+00 1107.4 920 61.0
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 1.8e-310 1069.3 628 85.7
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 2.7e-295 1018.8 627 81.0
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 5.3e-291 1004.6 655 78.5
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 7.7e-282 974.2 743 70.0
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 1.4e-275 953.4 593 83.1
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 1.5e-269 933.3 1023 48.6
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 3.7e-260 902.1 525 86.5
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 8.1e-255 884.4 627 71.9
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 2.2e-252 876.3 516 83.9
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 2.7e-218 763.1 479 82.7
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 1.5e-213 747.3 465 78.5
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 4.3e-208 729.2 444 86.5
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 1.0e-201 708.0 406 89.2
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.3e-196 691.0 426 82.4
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 7.0e-182 642.1 376 86.7
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 5.4e-150 536.2 354 81.1
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 1.2e-109 402.1 284 72.5
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 1.3e-87 328.9 195 82.6
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 1.0e-71 276.2 187 76.5
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 5.2e-68 263.8 206 65.0
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 7.5e-59 233.4 172 73.3
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 1.2e-48 199.5 145 73.1
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 2.6e-35 155.2 78 93.6
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 1.7e-18 99.4 82 59.8
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 6.4e-18 97.4 82 58.5
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 9.2e-17 93.6 96 52.1
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 2.8e-13 82.0 97 62.9
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 1.8e-12 79.3 51 72.5
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 3.1e-12 78.6 51 70.6
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 4.4e-11 74.7 51 68.6
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 2.5e-06 58.9 381 24.9


User provided reference genes

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