Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021756 Daucus carota HOM05D004631 ORTHO05D005223 5.8e-127 457.6 236 100.0
Lj7A605T75 Lonicera japonica HOM05D004631 ORTHO05D005223 4.3e-82 308.5 237 67.9
DCAR_011290 Daucus carota HOM05D004631 ORTHO05D005223 9.7e-82 307.4 234 68.4
Hma1.2p1_0227F.1_g095910 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 2.8e-81 305.8 238 67.6
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 3.7e-81 305.4 237 67.1
CAN.G473.59 Capsicum annuum HOM05D004631 ORTHO05D005223 1.1e-80 303.9 239 65.3
QL02p072911 Quercus lobata HOM05D004631 ORTHO05D005223 2.4e-80 302.8 238 65.1
PGSC0003DMG400020270 Solanum tuberosum HOM05D004631 ORTHO05D005223 2.4e-80 302.8 239 65.3
Solyc02g093820.4 Solanum lycopersicum HOM05D004631 ORTHO05D005223 6.9e-80 301.2 239 64.9
CSS0019474 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 1.2e-79 300.4 237 66.2
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 1.2e-79 300.4 239 66.1
Rhsim08G0046200 Rhododendron simsii HOM05D004631 ORTHO05D005223 1.2e-79 300.4 235 65.5
Sopen02g038460 Solanum pennellii HOM05D004631 ORTHO05D005223 2.0e-79 299.7 239 64.4
FAN02G2863 Fragaria x ananassa HOM05D004631 ORTHO05D005223 2.6e-79 299.3 237 67.1
Prupe.3G299600 Prunus persica HOM05D004631 ORTHO05D005223 2.6e-79 299.3 236 66.9
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 3.4e-79 298.9 237 67.5
CiPaw.03G050500 Carya illinoinensis HOM05D004631 ORTHO05D005223 5.9e-79 298.1 237 64.6
vmacro18314 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 7.7e-79 297.7 228 67.1
CSS0019664 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.2e-78 296.2 237 65.4
vmacro05924 Vaccinium macrocarpon HOM05D004631 ORTHO05D005223 3.8e-78 295.4 236 65.3
Duzib264G0826 Durio zibethinus HOM05D004631 ORTHO05D005223 5.0e-78 295.0 236 64.4
GSVIVG01001850001 Vitis vinifera HOM05D004631 ORTHO05D005223 5.0e-78 295.0 235 68.9
Haze_14815 Corylus avellana HOM05D004631 ORTHO05D005223 8.5e-78 294.3 255 61.2
Cfa007277 Carpinus fangiana HOM05D004631 ORTHO05D005223 1.1e-77 293.9 237 62.9
Gorai.011G093000 Gossypium raimondii HOM05D004631 ORTHO05D005223 1.9e-77 293.1 239 63.6
FvH4_6g52650 Fragaria vesca HOM05D004631 ORTHO05D005223 2.5e-77 292.7 237 65.8
HanXRQChr17g0549531 Helianthus annuus HOM05D004631 ORTHO05D005223 2.5e-77 292.7 234 65.8
TWI59G0755 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 2.5e-77 292.7 237 61.6
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 4.2e-77 292.0 237 62.9
Hma1.2p1_0279F.1_g112270 Hydrangea macrophylla HOM05D004631 ORTHO05D005223 4.2e-77 292.0 236 65.3
CiPaw.04G033100 Carya illinoinensis HOM05D004631 ORTHO05D005223 5.5e-77 291.6 239 66.1
Nn4g22438 Nelumbo nucifera HOM05D004631 ORTHO05D005223 7.2e-77 291.2 239 65.7
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 2.7e-76 289.3 238 65.5
FAN05G1873 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.6e-76 288.9 238 65.5
FAN14G1903 Fragaria x ananassa HOM05D004631 ORTHO05D005223 6.1e-76 288.1 238 65.5
Cc07_g00410 Coffea canephora HOM05D004631 ORTHO05D005223 1.0e-75 287.3 234 64.5
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 1.4e-75 287.0 237 64.1
Gohir.D10G085100 Gossypium hirsutum HOM05D004631 ORTHO05D005223 1.8e-75 286.6 239 63.2
Lalb_Chr14g0363051 Lupinus albus HOM05D004631 ORTHO05D005223 2.3e-75 286.2 235 62.6
Glyma.16G063100 Glycine max HOM05D004631 ORTHO05D005223 3.0e-75 285.8 237 63.3
Glyma.19G082400 Glycine max HOM05D004631 ORTHO05D005223 3.9e-75 285.4 236 63.6
SGA_v2.0_scaffold18G08240 Striga asiatica HOM05D004631 ORTHO05D005223 3.9e-75 285.4 238 61.3
Gohir.A10G160500 Gossypium hirsutum HOM05D004631 ORTHO05D005223 8.8e-75 284.3 241 62.7
PGR142G2057 Punica granatum HOM05D004631 ORTHO05D005223 8.8e-75 284.3 237 66.2
AUR62032242 Chenopodium quinoa HOM05D004631 ORTHO05D005223 1.1e-74 283.9 239 63.6
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 3.3e-74 282.3 236 60.6
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 3.3e-74 282.3 236 61.0
Manes.07G089400 Manihot esculenta HOM05D004631 ORTHO05D005223 3.3e-74 282.3 234 62.8
Gohir.D04G079800 Gossypium hirsutum HOM05D004631 ORTHO05D005223 4.3e-74 282.0 239 61.5
Gorai.012G089800 Gossypium raimondii HOM05D004631 ORTHO05D005223 5.7e-74 281.6 239 61.1
COL.COLO4_29276 Corchorus olitorius HOM05D004631 ORTHO05D005223 7.4e-74 281.2 227 66.5
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 9.7e-74 280.8 238 60.9
AUR62011927 Chenopodium quinoa HOM05D004631 ORTHO05D005223 1.7e-73 280.0 239 63.2
FAN09G3073 Fragaria x ananassa HOM05D004631 ORTHO05D005223 1.7e-73 280.0 238 63.0
TAR371G0552 Trochodendron aralioides HOM05D004631 ORTHO05D005223 1.7e-73 280.0 236 64.0
Sabra09G0043700 Salix brachista HOM05D004631 ORTHO05D005223 6.3e-73 278.1 237 62.4
EL10Ac5g10455 Beta vulgaris HOM05D004631 ORTHO05D005223 1.4e-72 276.9 235 62.6
arahy.Tifrunner.gnm1.ann1.5W0L45 Arachis hypogaea HOM05D004631 ORTHO05D005223 1.8e-72 276.6 229 65.1
Cpa.g.c34704 Carica papaya HOM05D004631 ORTHO05D005223 2.4e-72 276.2 229 63.8
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 3.1e-72 275.8 234 62.4
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 4.1e-72 275.4 234 62.0
arahy.Tifrunner.gnm1.ann1.NS464T Arachis hypogaea HOM05D004631 ORTHO05D005223 5.3e-72 275.0 229 64.6
Oeu050430.2 Olea europaea HOM05D004631 ORTHO05D005223 9.1e-72 274.2 266 56.4
Sabra16G0162600 Salix brachista HOM05D004631 ORTHO05D005223 9.1e-72 274.2 237 62.0
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 1.2e-71 273.9 270 57.0
TAR629G3282 Trochodendron aralioides HOM05D004631 ORTHO05D005223 2.0e-71 273.1 236 63.1
Ca_04405_v3 Cicer arietinum L. HOM05D004631 ORTHO05D005223 2.6e-71 272.7 222 64.4
CsaV3_6G001200 Cucumis sativus L. HOM05D004631 ORTHO05D005223 2.6e-71 272.7 231 61.5
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 2.6e-71 272.7 238 60.9
AT3G27310 Arabidopsis thaliana HOM05D004631 ORTHO05D005223 1.7e-70 270.0 238 60.9
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 2.2e-70 269.6 230 59.1
PSO782G2324 Papaver somniferum HOM05D004631 ORTHO05D005223 2.9e-70 269.2 235 58.3
PSO063G4908 Papaver somniferum HOM05D004631 ORTHO05D005223 5.0e-70 268.5 235 59.1
Potri.009G059300 Populus trichocarpa HOM05D004631 ORTHO05D005223 5.0e-70 268.5 237 59.9
Carub.0005s0558 Capsella rubella HOM05D004631 ORTHO05D005223 8.5e-70 267.7 239 59.8
CARHR148590 Cardamine hirsuta HOM05D004631 ORTHO05D005223 1.4e-69 266.9 236 58.1
ClCG11G006850 Citrullus lanatus HOM05D004631 ORTHO05D005223 1.4e-69 266.9 261 54.8
ECA246G0472 Erigeron canadensis HOM05D004631 ORTHO05D005223 1.9e-69 266.5 245 60.4
Peaxi162Scf00420g00342 Petunia axillaris HOM05D004631 ORTHO05D005223 1.9e-69 266.5 238 59.7
Peaxi162Scf00420g00345 Petunia axillaris HOM05D004631 ORTHO05D005223 1.9e-69 266.5 238 59.7
Potri.001G264500 Populus trichocarpa HOM05D004631 ORTHO05D005223 1.9e-69 266.5 236 61.0
Atru.chr6.2487 Acer truncatum HOM05D004631 ORTHO05D005223 3.2e-69 265.8 237 60.3
Gohir.A05G341700 Gossypium hirsutum HOM05D004631 ORTHO05D005223 4.2e-69 265.4 224 61.6
Lsat_1_v5_gn_0_32720 Lactuca sativa HOM05D004631 ORTHO05D005223 4.2e-69 265.4 237 61.6
Sed0025843 Sechium edule HOM05D004631 ORTHO05D005223 7.2e-69 264.6 240 59.6
Actinidia05943 Actinidia chinensis HOM05D000918 ORTHO05D000791 1.6e-68 263.5 221 63.3
Dinv25693 Davidia involucrata HOM05D004631 ORTHO05D005223 2.1e-68 263.1 207 66.2
SalBow1G3920 Salvia bowleyana HOM05D004631 ORTHO05D005223 3.6e-68 262.3 270 54.8
AL5G16540 Arabidopsis lyrata HOM05D004631 ORTHO05D005223 6.1e-68 261.5 237 58.6
Lj2g0014181 Lotus japonicus HOM05D004631 ORTHO05D005223 6.1e-68 261.5 231 60.6
SalBow1G0328 Salvia bowleyana HOM05D004631 ORTHO05D005223 1.0e-67 260.8 270 54.4
Thhalv10004822m.g Eutrema salsugineum HOM05D004631 ORTHO05D005223 2.3e-67 259.6 236 57.2
HanXRQChr15g0487081 Helianthus annuus HOM05D004631 ORTHO05D005223 2.3e-67 259.6 241 63.9
Psat1g084240 Pisum sativum HOM05D004631 ORTHO05D005223 3.0e-67 259.2 229 59.8
Sed0000329 Sechium edule HOM05D004631 ORTHO05D005223 1.1e-66 257.3 231 59.3
Lsat_1_v5_gn_4_185741 Lactuca sativa HOM05D004631 ORTHO05D005223 3.3e-66 255.8 227 61.2
Aa31LG2G5340 Aethionema arabicum HOM05D004631 ORTHO05D005223 4.4e-66 255.4 252 55.6
TWI23G0469 Tripterygium wilfordii HOM05D004631 ORTHO05D005223 5.7e-66 255.0 237 55.3
BcaC06g31006 Brassica carinata HOM05D004631 ORTHO05D005223 7.4e-66 254.6 233 57.1
ECA232G0338 Erigeron canadensis HOM05D004631 ORTHO05D005223 9.7e-66 254.2 238 61.3
Dinv33383 Davidia involucrata HOM05D004631 ORTHO05D005223 2.2e-65 253.1 165 77.0
MBI05_g32279_MAGBIO Magnolia biondii HOM05D004631 ORTHO05D005223 3.7e-65 252.3 231 61.0
VMungo1383G3654 Vigna mungo HOM05D004631 ORTHO05D005223 3.7e-65 252.3 232 58.2
Phvul.008G148800 Phaseolus vulgaris HOM05D004631 ORTHO05D005223 1.1e-64 250.8 234 58.5
unitig_62.g23368 Utricularia gibba HOM05D004631 ORTHO05D005223 1.4e-64 250.4 226 56.2
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 1.8e-64 250.0 223 57.4
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 1.8e-64 250.0 223 57.4
MSTRG.3110 Avicennia marina HOM05D004631 ORTHO05D005223 2.4e-64 249.6 237 54.9
TPR.G29003 Trifolium pratense HOM05D004631 ORTHO05D005223 2.4e-64 249.6 228 58.8
C07p36360 Brassica napus HOM05D004631 ORTHO05D005223 3.1e-64 249.2 220 57.3
A06p41300 Brassica napus HOM05D004631 ORTHO05D005223 3.5e-63 245.7 220 57.3
BraA06t27055Z Brassica rapa HOM05D004631 ORTHO05D005223 3.5e-63 245.7 220 57.3
Nitab4.5_0001863g0070 Nicotiana tabacum HOM05D004631 ORTHO05D005223 4.5e-63 245.4 229 58.5
CSS0005098 Camellia sinensis var. sinensis HOM05D004631 ORTHO05D005223 2.2e-62 243.0 180 70.0
Sc03g0007030 Simmondsia chinensis HOM05D004631 ORTHO05D005223 6.5e-62 241.5 194 64.9
Sp2g16470 Schrenkiella parvula HOM05D004631 ORTHO05D005223 1.1e-61 240.7 233 53.6
Lj1g0026695 Lotus japonicus HOM05D004631 ORTHO05D005223 1.0e-59 234.2 240 52.5
Medtr6g023080 Medicago truncatula HOM05D004631 ORTHO05D005223 4.0e-59 232.3 204 59.3
HPP92_028037 Vanilla planifolia HOM05D004631 ORTHO05D005223 6.7e-59 231.5 238 54.6
Oeu058758.2 Olea europaea HOM05D004631 ORTHO05D005223 1.1e-56 224.2 166 69.3
ATR0824G076 Amborella trichopoda HOM05D004631 ORTHO05D005223 8.5e-54 214.5 232 53.0
MELO3C008218.2 Cucumis melo HOM05D004631 ORTHO05D005223 5.5e-53 211.8 188 60.1
Os04g0485200 Oryza sativa ssp. japonica HOM05D004631 ORTHO05D005223 2.2e-49 199.9 234 50.0
Zm00001eb425170 Zea mays HOM05D004631 ORTHO05D005223 7.0e-48 194.9 233 48.9
TPR.G2332 Trifolium pratense HOM05D004631 ORTHO05D005223 1.6e-47 193.7 148 68.9
Zm00001eb079230 Zea mays HOM05D004631 ORTHO05D005223 2.7e-47 193.0 240 48.3
Medtr0531s0010 Medicago truncatula HOM05D004631 ORTHO05D005223 5.0e-46 188.7 168 58.9
Medtr6g022770 Medicago truncatula HOM05D004631 ORTHO05D005223 1.1e-45 187.6 130 68.5
Mapoly0078s0021 Marchantia polymorpha HOM05D004631 ORTHO05D005223 4.0e-43 179.1 234 41.9
Ciclev10003548m.g Citrus clementina HOM05D004631 ORTHO05D005223 5.2e-43 178.7 250 50.0
MD10G1138200 Malus domestica HOM05D004631 ORTHO05D005223 2.8e-41 172.9 128 65.6
Prupe.8G176800 Prunus persica HOM05D004631 ORTHO05D005223 2.8e-41 172.9 120 70.8
Actinidia35792 Actinidia chinensis HOM05D004631 ORTHO05D005223 9.5e-37 157.9 125 71.2
Nitab4.5_0008718g0050 Nicotiana tabacum HOM05D004631 ORTHO05D005223 3.0e-35 152.9 197 49.2
SMO199G0125 Selaginella moellendorffii HOM05D004631 ORTHO05D005223 1.5e-34 150.6 230 40.0
Potri.001G337533 Populus trichocarpa HOM05D004631 ORTHO05D005223 2.7e-31 139.8 196 44.9
Pp3c7_140 Physcomitrium patens HOM05D004631 ORTHO05D005223 3.9e-30 136.0 240 36.7
FvH4_2g09210 Fragaria vesca HOM05D004631 ORTHO05D005223 2.3e-27 126.7 155 49.0
FAN27G0193 Fragaria x ananassa HOM05D004631 ORTHO05D005223 3.1e-27 126.3 137 52.6
Eucgr.L03061 Eucalyptus grandis HOM05D004631 ORTHO05D005223 4.0e-27 125.9 82 70.7
FAN24G1590 Fragaria x ananassa HOM05D004631 ORTHO05D005223 6.8e-27 125.2 137 52.6
Medtr4g103350 Medicago truncatula HOM05D004631 ORTHO05D005223 2.6e-26 123.2 154 47.4
HPP92_027613 Vanilla planifolia HOM05D004631 ORTHO05D005223 1.6e-23 114.0 119 53.8
BcaC04g23906 Brassica carinata HOM05D004631 ORTHO05D005223 1.0e-22 111.3 89 65.2
A09p03370 Brassica napus HOM05D004631 ORTHO05D005223 5.6e-21 105.5 120 50.0
BraA09t35975Z Brassica rapa HOM05D004631 ORTHO05D005223 5.6e-21 105.5 120 50.0
BraA09t35976Z Brassica rapa HOM05D004631 ORTHO05D005223 5.6e-21 105.5 120 50.0
RcHm_v2.0_Chr6g0265061 Rosa chinensis HOM05D004631 ORTHO05D005223 2.1e-15 87.0 117 48.7
SMO361G0265 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 3.0e-14 83.2 247 29.6
SMO361G0508 Selaginella moellendorffii HOM05D022709 ORTHO05D005223 3.0e-14 83.2 192 32.8
BcaB04g19435 Brassica carinata HOM05D002252 ORTHO05D002451 3.9e-14 82.8 103 44.7
Zm00001eb055680 Zea mays HOM05D004631 ORTHO05D005223 3.3e-13 79.7 101 45.5
HPP92_027614 Vanilla planifolia HOM05D004631 ORTHO05D005223 2.0e-10 70.5 74 54.1
Actinidia36166 Actinidia chinensis HOM05D004631 ORTHO05D005223 2.6e-10 70.1 59 64.4
Sabra16G0218300 Salix brachista HOM05D004631 ORTHO05D005223 8.4e-09 65.1 44 65.9
PRCOL_00003248 Prasinoderma coloniale HOM05D004631 ORTHO05D005223 2.4e-08 63.5 222 25.7
C09p03590 Brassica napus HOM05D004631 ORTHO05D005223 3.9e-06 56.2 35 77.1
SMO361G0571 Selaginella moellendorffii HOM05D018282 ORTHO05D005223 8.6e-06 55.1 47 55.3


User provided reference genes

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