Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 2.0e-147 525.8 267 100.0
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 1.3e-82 310.5 324 59.0
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 3.9e-71 272.3 312 52.2
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 5.8e-67 258.5 275 54.2
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 6.4e-66 255.0 314 49.7
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 5.5e-65 251.9 302 52.0
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 9.3e-65 251.1 299 50.8
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 2.7e-64 249.6 296 50.7
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 6.0e-64 248.4 295 53.2
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 7.9e-64 248.1 255 54.9
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 7.9e-64 248.1 300 52.0
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 7.9e-64 248.1 295 51.9
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.0e-63 247.7 242 57.4
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 1.0e-63 247.7 292 51.0
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 1.8e-63 246.9 292 50.7
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 1.8e-63 246.9 305 48.9
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 3.0e-63 246.1 325 49.2
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 5.1e-63 245.4 298 51.3
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 6.7e-63 245.0 292 50.0
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 6.7e-63 245.0 265 55.5
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 8.7e-63 244.6 300 51.7
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 8.7e-63 244.6 315 49.8
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 1.1e-62 244.2 299 50.2
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 4.3e-62 242.3 297 49.5
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 7.4e-62 241.5 297 50.5
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 7.4e-62 241.5 300 48.7
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 7.4e-62 241.5 299 49.8
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 1.6e-61 240.4 301 48.5
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 2.1e-61 240.0 278 50.7
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 3.7e-61 239.2 325 47.1
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 4.8e-61 238.8 298 48.7
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 1.1e-60 237.7 294 49.7
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 1.4e-60 237.3 318 48.4
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 1.4e-60 237.3 294 48.6
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 1.8e-60 236.9 299 48.2
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 1.8e-60 236.9 280 48.9
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 4.0e-60 235.7 301 48.2
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 4.0e-60 235.7 301 48.2
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 4.0e-60 235.7 307 48.2
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 5.3e-60 235.3 307 47.9
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 6.9e-60 235.0 277 50.9
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 6.9e-60 235.0 286 49.7
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 1.2e-59 234.2 324 46.6
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 1.5e-59 233.8 302 48.0
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 1.5e-59 233.8 279 49.5
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 2.6e-59 233.0 307 47.6
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 2.6e-59 233.0 292 49.0
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 3.4e-59 232.6 301 47.5
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 4.5e-59 232.3 278 50.7
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 4.5e-59 232.3 304 47.0
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 7.6e-59 231.5 307 47.6
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 7.6e-59 231.5 302 47.7
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 7.6e-59 231.5 283 49.5
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 7.6e-59 231.5 278 50.4
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 1.0e-58 231.1 292 47.6
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 1.0e-58 231.1 326 44.2
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 1.0e-58 231.1 273 50.5
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 1.0e-58 231.1 316 47.2
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 1.3e-58 230.7 301 47.5
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 1.3e-58 230.7 301 47.2
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 2.2e-58 229.9 326 46.3
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 2.2e-58 229.9 278 50.4
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 2.2e-58 229.9 309 47.2
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 2.9e-58 229.6 279 48.4
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 4.9e-58 228.8 329 45.3
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 4.9e-58 228.8 301 47.5
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 6.5e-58 228.4 326 46.3
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 6.5e-58 228.4 314 46.8
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 8.4e-58 228.0 237 53.6
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 1.1e-57 227.6 333 45.9
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 1.1e-57 227.6 301 47.2
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 1.1e-57 227.6 285 47.7
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 1.4e-57 227.3 318 45.6
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 1.4e-57 227.3 302 46.4
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 1.9e-57 226.9 326 46.0
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 2.5e-57 226.5 297 46.5
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 5.5e-57 225.3 273 49.1
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 7.1e-57 224.9 326 45.4
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 7.1e-57 224.9 354 42.7
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 1.6e-56 223.8 278 47.5
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 3.5e-56 222.6 237 53.2
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 4.6e-56 222.2 345 42.0
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 1.8e-55 220.3 237 52.3
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 2.3e-55 219.9 273 47.6
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 2.3e-55 219.9 299 45.5
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 3.0e-55 219.5 299 46.5
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 5.1e-55 218.8 281 47.0
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 5.1e-55 218.8 305 44.9
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 6.7e-55 218.4 298 46.3
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 6.7e-55 218.4 288 47.2
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 6.7e-55 218.4 310 44.5
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 8.7e-55 218.0 306 45.1
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 1.1e-54 217.6 273 48.7
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 1.1e-54 217.6 315 45.4
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 1.5e-54 217.2 277 46.9
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 1.5e-54 217.2 303 45.5
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 1.5e-54 217.2 237 51.5
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 1.9e-54 216.9 316 43.4
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 1.9e-54 216.9 273 47.3
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 2.5e-54 216.5 300 44.7
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 2.5e-54 216.5 297 45.5
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 4.3e-54 215.7 289 45.0
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 1.3e-53 214.2 324 43.2
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 1.6e-53 213.8 279 46.2
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 1.1e-52 211.1 299 44.8
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 2.4e-52 209.9 218 56.0
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 4.1e-52 209.1 295 43.7
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 5.3e-52 208.8 289 44.3
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 9.0e-52 208.0 296 43.6
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 4.5e-51 205.7 314 43.3
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 7.6e-51 204.9 307 42.7
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 3.8e-50 202.6 316 42.7
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 6.5e-50 201.8 342 41.5
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 3.3e-46 189.5 267 44.9
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 4.3e-46 189.1 323 39.6
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 1.8e-44 183.7 242 41.7
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 9.0e-44 181.4 363 38.3
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 2.0e-38 163.7 269 39.8
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 1.7e-37 160.6 275 38.5
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 7.7e-35 151.8 117 67.5
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 1.0e-34 151.4 109 72.5
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 6.5e-34 148.7 111 71.2
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 5.0e-26 122.5 286 31.5
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 2.1e-16 90.5 92 46.7
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 5.2e-15 85.9 179 37.4
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 8.8e-15 85.1 78 51.3
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 6.3e-13 79.0 173 31.2


User provided reference genes

Program Settings