Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021678 Daucus carota HOM05D003549 ORTHO05D004223 8.4e-78 293.9 180 100.0
Dinv33505 Davidia involucrata HOM05D003549 ORTHO05D004223 1.8e-19 100.1 68 76.5
Cc04_g12860 Coffea canephora HOM05D003549 ORTHO05D004223 8.3e-17 91.3 69 79.7
GSVIVG01032498001 Vitis vinifera HOM05D003549 ORTHO05D004223 8.3e-17 91.3 71 77.5
Sed0023520 Sechium edule HOM05D003549 ORTHO05D004223 1.1e-16 90.9 70 84.3
Haze_07495 Corylus avellana HOM05D003549 ORTHO05D004223 3.2e-16 89.4 71 83.1
QL02p076964 Quercus lobata HOM05D003549 ORTHO05D004223 3.2e-16 89.4 71 73.2
CsaV3_1G008390 Cucumis sativus L. HOM05D003549 ORTHO05D004223 4.1e-16 89.0 71 84.5
Glyma.04G181200 Glycine max HOM05D003549 ORTHO05D004223 4.1e-16 89.0 71 83.1
Lj6g0023924 Lotus japonicus HOM05D003549 ORTHO05D004223 4.1e-16 89.0 71 78.9
Nn8g39923 Nelumbo nucifera HOM05D003549 ORTHO05D004223 5.4e-16 88.6 71 73.2
ClCG01G013030 Citrullus lanatus HOM05D003549 ORTHO05D004223 7.0e-16 88.2 71 84.5
TWI81G0050 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 7.0e-16 88.2 71 76.1
TWI81G1057 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 7.0e-16 88.2 71 76.1
Phvul.001G059000 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 9.2e-16 87.8 71 78.9
Rhsim12G0163400 Rhododendron simsii HOM05D003549 ORTHO05D004223 9.2e-16 87.8 71 70.4
Ca_16195_v3 Cicer arietinum L. HOM05D003549 ORTHO05D004223 2.0e-15 86.7 71 76.1
Hma1.2p1_0176F.1_g077660 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 2.0e-15 86.7 69 82.6
Phvul.009G179900 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 2.7e-15 86.3 71 78.9
CiPaw.11G028500 Carya illinoinensis HOM05D003549 ORTHO05D004223 3.5e-15 85.9 71 76.1
Glyma.06G183700 Glycine max HOM05D003549 ORTHO05D004223 3.5e-15 85.9 71 80.3
RcHm_v2.0_Chr2g0170951 Rosa chinensis HOM05D003549 ORTHO05D004223 3.5e-15 85.9 69 78.3
FAN02G2804 Fragaria x ananassa HOM05D003549 ORTHO05D004223 4.6e-15 85.5 69 76.8
FAN05G0330 Fragaria x ananassa HOM05D003549 ORTHO05D004223 4.6e-15 85.5 69 76.8
FAN09G2996 Fragaria x ananassa HOM05D003549 ORTHO05D004223 4.6e-15 85.5 69 76.8
FAN09G4496 Fragaria x ananassa HOM05D003549 ORTHO05D004223 4.6e-15 85.5 69 76.8
MBI15_g31119_MAGBIO Magnolia biondii HOM05D003549 ORTHO05D004223 4.6e-15 85.5 71 81.7
Nn2g12408 Nelumbo nucifera HOM05D003549 ORTHO05D004223 4.6e-15 85.5 70 78.6
ClCG08G009420 Citrullus lanatus HOM05D003549 ORTHO05D004223 5.9e-15 85.1 70 78.6
MELO3C026538.2 Cucumis melo HOM05D003549 ORTHO05D004223 5.9e-15 85.1 70 78.6
CsaV3_6G031560 Cucumis sativus L. HOM05D003549 ORTHO05D004223 5.9e-15 85.1 70 78.6
Glyma.17G198800 Glycine max HOM05D003549 ORTHO05D004223 5.9e-15 85.1 69 78.3
Sed0001837 Sechium edule HOM05D003549 ORTHO05D004223 5.9e-15 85.1 70 65.7
CiPaw.12G025200 Carya illinoinensis HOM05D003549 ORTHO05D004223 7.8e-15 84.7 71 70.4
Glyma.14G134200 Glycine max HOM05D003549 ORTHO05D004223 7.8e-15 84.7 69 79.7
Lsat_1_v5_gn_4_74920 Lactuca sativa HOM05D003549 ORTHO05D004223 7.8e-15 84.7 70 75.7
Lj1g0007079 Lotus japonicus HOM05D003549 ORTHO05D004223 7.8e-15 84.7 69 79.7
Nitab4.5_0000852g0140 Nicotiana tabacum HOM05D003549 ORTHO05D004223 7.8e-15 84.7 69 73.9
Nitab4.5_0003857g0060 Nicotiana tabacum HOM05D003549 ORTHO05D004223 7.8e-15 84.7 69 73.9
Migut.D01775 Erythranthe guttata HOM05D003549 ORTHO05D004223 1.3e-14 84.0 69 81.2
Psat5g114160 Pisum sativum HOM05D003549 ORTHO05D004223 1.3e-14 84.0 71 77.5
RcHm_v2.0_Chr7g0193821 Rosa chinensis HOM05D003549 ORTHO05D004223 1.3e-14 84.0 68 77.9
Duzib205G0517 Durio zibethinus HOM05D003549 ORTHO05D004223 1.7e-14 83.6 67 74.6
HanXRQChr16g0517241 Helianthus annuus HOM05D003549 ORTHO05D004223 1.7e-14 83.6 69 81.2
Lalb_Chr08g0236401 Lupinus albus HOM05D003549 ORTHO05D004223 1.7e-14 83.6 71 76.1
Oeu000929.1 Olea europaea HOM05D003549 ORTHO05D004223 2.3e-14 83.2 69 79.7
TWI60G0590 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 2.3e-14 83.2 67 68.7
Actinidia04982 Actinidia chinensis HOM05D000215 ORTHO05D003454 3.0e-14 82.8 71 78.9
FAN04G1549 Fragaria x ananassa HOM05D003549 ORTHO05D004223 3.0e-14 82.8 68 77.9
FAN08G2999 Fragaria x ananassa HOM05D003549 ORTHO05D004223 3.0e-14 82.8 68 77.9
FAN13G2761 Fragaria x ananassa HOM05D003549 ORTHO05D004223 3.0e-14 82.8 68 77.9
TAR622G0024 Trochodendron aralioides HOM05D003549 ORTHO05D004223 3.0e-14 82.8 71 78.9
TAR622G1417 Trochodendron aralioides HOM05D003549 ORTHO05D004223 3.0e-14 82.8 71 78.9
TAR629G2438 Trochodendron aralioides HOM05D003549 ORTHO05D004223 3.0e-14 82.8 71 67.6
ECA232G0606 Erigeron canadensis HOM05D003549 ORTHO05D004223 3.9e-14 82.4 76 73.7
PSO017G2368 Papaver somniferum HOM05D003549 ORTHO05D004223 3.9e-14 82.4 71 69.0
Hund03159 Selenicereus undatus HOM05D003549 ORTHO05D004223 3.9e-14 82.4 66 83.3
PSO478G4862 Papaver somniferum HOM05D003549 ORTHO05D004223 5.0e-14 82.0 71 69.0
Potri.001G334600 Populus trichocarpa HOM05D003549 ORTHO05D004223 5.0e-14 82.0 68 80.9
Prupe.3G282400 Prunus persica HOM05D003549 ORTHO05D004223 5.0e-14 82.0 71 74.6
RcHm_v2.0_Chr7g0184521 Rosa chinensis HOM05D003549 ORTHO05D004223 5.0e-14 82.0 68 76.5
FvH4_6g50520 Fragaria vesca HOM05D003549 ORTHO05D004223 6.6e-14 81.6 69 73.9
FAN14G1319 Fragaria x ananassa HOM05D003549 ORTHO05D004223 6.6e-14 81.6 69 73.9
Peaxi162Scf00017g02716 Petunia axillaris HOM05D003549 ORTHO05D004223 6.6e-14 81.6 69 71.0
Actinidia33056 Actinidia chinensis HOM05D000215 ORTHO05D003454 8.6e-14 81.3 71 77.5
arahy.Tifrunner.gnm1.ann1.G4GSC6 Arachis hypogaea HOM05D003549 ORTHO05D004223 8.6e-14 81.3 71 78.9
arahy.Tifrunner.gnm1.ann1.TT1NYY Arachis hypogaea HOM05D003549 ORTHO05D004223 8.6e-14 81.3 71 78.9
FvH4_5g05150 Fragaria vesca HOM05D003549 ORTHO05D004223 8.6e-14 81.3 68 77.9
FAN18G4010 Fragaria x ananassa HOM05D003549 ORTHO05D004223 8.6e-14 81.3 68 77.9
Hma1.2p1_0802F.1_g220520 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 8.6e-14 81.3 67 65.7
SalBow2G1727 Salvia bowleyana HOM05D003549 ORTHO05D004223 8.6e-14 81.3 69 66.7
THA.LOC104805767 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 8.6e-14 81.3 71 78.9
TWI15G0885 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 8.6e-14 81.3 71 70.4
Aqoxy3G00995 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 1.1e-13 80.9 73 72.6
Ciclev10017382m.g Citrus clementina HOM05D003549 ORTHO05D004223 1.1e-13 80.9 71 76.1
MD06G1177000 Malus domestica HOM05D003549 ORTHO05D004223 1.1e-13 80.9 71 74.6
Potri.017G066900 Populus trichocarpa HOM05D003549 ORTHO05D004223 1.5e-13 80.5 71 77.5
Ciclev10023184m.g Citrus clementina HOM05D003549 ORTHO05D004223 1.9e-13 80.1 71 78.9
Dinv09155 Davidia involucrata HOM05D003549 ORTHO05D004223 1.9e-13 80.1 71 74.6
Duzib084G0774 Durio zibethinus HOM05D003549 ORTHO05D004223 1.9e-13 80.1 67 73.1
Actinidia19094 Actinidia chinensis HOM05D003549 ORTHO05D004223 2.5e-13 79.7 71 76.1
SGA_v2.0_scaffold90G27958 Striga asiatica HOM05D000215 ORTHO05D003454 2.5e-13 79.7 69 66.7
Aa31LG2G1940 Aethionema arabicum HOM05D003549 ORTHO05D004223 4.3e-13 79.0 71 73.2
MD14G1183200 Malus domestica HOM05D003549 ORTHO05D004223 5.6e-13 78.6 71 74.6
Solyc03g114170.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 5.6e-13 78.6 69 71.0
Gohir.A07G060300 Gossypium hirsutum HOM05D003549 ORTHO05D004223 7.3e-13 78.2 69 76.8
CSS0022405 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 1.2e-12 77.4 71 76.1
Medtr3g078130 Medicago truncatula HOM05D003549 ORTHO05D004223 1.2e-12 77.4 71 73.2
Solyc06g071390.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 1.2e-12 77.4 69 75.4
Sopen03g033240 Solanum pennellii HOM05D003549 ORTHO05D004223 1.2e-12 77.4 69 69.6
Sopen06g027670 Solanum pennellii HOM05D003549 ORTHO05D004223 1.2e-12 77.4 69 75.4
PGSC0003DMG400024492 Solanum tuberosum HOM05D003549 ORTHO05D004223 1.2e-12 77.4 69 69.6
PSO832G2372 Papaver somniferum HOM05D003549 ORTHO05D004223 1.6e-12 77.0 66 71.2
BcaB03g15337 Brassica carinata HOM05D003549 ORTHO05D004223 2.1e-12 76.6 77 67.5
PSO063G4497 Papaver somniferum HOM05D003549 ORTHO05D004223 2.1e-12 76.6 66 68.2
THA.LOC104823782 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 2.8e-12 76.3 70 75.7
CAN.G628.73 Capsicum annuum HOM05D003549 ORTHO05D004223 3.6e-12 75.9 69 73.9
PGSC0003DMG400027096 Solanum tuberosum HOM05D003549 ORTHO05D004223 3.6e-12 75.9 69 75.4
TAR371G0468 Trochodendron aralioides HOM05D003549 ORTHO05D004223 6.2e-12 75.1 71 77.5
Zm00001eb332940 Zea mays HOM05D003549 ORTHO05D004223 6.2e-12 75.1 62 74.2
Sc04g0001880 Simmondsia chinensis HOM05D003549 ORTHO05D004223 8.0e-12 74.7 67 76.1
Prupe.5G175700 Prunus persica HOM05D003549 ORTHO05D004223 1.8e-11 73.6 71 71.8
ECA246G5096 Erigeron canadensis HOM05D003549 ORTHO05D004223 3.1e-11 72.8 62 82.3
Manes.14G067300 Manihot esculenta HOM05D003549 ORTHO05D004223 3.1e-11 72.8 73 75.3
THA.LOC109116495 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 3.1e-11 72.8 71 66.2
A07p32720 Brassica napus HOM05D003549 ORTHO05D004223 4.0e-11 72.4 72 69.4
C06p38930 Brassica napus HOM05D003549 ORTHO05D004223 4.0e-11 72.4 72 69.4
BolC6t38985H Brassica oleracea HOM05D003549 ORTHO05D004223 4.0e-11 72.4 72 69.4
BraA07t30898Z Brassica rapa HOM05D003549 ORTHO05D004223 4.0e-11 72.4 72 69.4
Hma1.2p1_0967F.1_g242260 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 4.0e-11 72.4 79 55.7
TPR.G30392 Trifolium pratense HOM05D003549 ORTHO05D004223 6.8e-11 71.6 79 68.4
Cpa.g.sc124.38 Carica papaya HOM05D003549 ORTHO05D004223 8.9e-11 71.2 69 73.9
CANSAT64G1109 Cannabis sativa HOM05D003549 ORTHO05D004223 1.2e-10 70.9 69 71.0
Peaxi162Scf00535g00046 Petunia axillaris HOM05D003549 ORTHO05D004223 1.2e-10 70.9 69 60.9
HPP92_002194 Vanilla planifolia HOM05D003549 ORTHO05D004223 1.2e-10 70.9 72 70.8
Thecc.03G009800 Theobroma cacao HOM05D003549 ORTHO05D004223 1.5e-10 70.5 69 69.6
Sp5g19250 Schrenkiella parvula HOM05D003549 ORTHO05D004223 2.0e-10 70.1 71 70.4
Cpa.g.sc1914.1 Carica papaya HOM05D003549 ORTHO05D004223 2.6e-10 69.7 46 80.4
COL.COLO4_34052 Corchorus olitorius HOM05D003549 ORTHO05D004223 2.6e-10 69.7 68 73.5
CARHR049490 Cardamine hirsuta HOM05D003549 ORTHO05D004223 4.4e-10 68.9 71 69.0
Aqoxy3G02997 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 5.8e-10 68.6 68 72.1
Thhalv10022469m.g Eutrema salsugineum HOM05D003549 ORTHO05D004223 1.3e-09 67.4 71 69.0
BcaB05g23601 Brassica carinata HOM05D003549 ORTHO05D004223 2.2e-09 66.6 69 58.0
SMO145G0027 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 2.2e-09 66.6 80 56.2
Rhsim08G0170600 Rhododendron simsii HOM05D003549 ORTHO05D004223 2.9e-09 66.2 71 57.7
SMO139G0002 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 2.9e-09 66.2 74 59.5
DCAR_021565 Daucus carota HOM05D003549 ORTHO05D004223 4.9e-09 65.5 69 66.7
Eucgr.K02857 Eucalyptus grandis HOM05D003549 ORTHO05D004223 6.4e-09 65.1 68 73.5
Mapoly0025s0126 Marchantia polymorpha HOM05D003549 ORTHO05D004223 6.4e-09 65.1 63 65.1
Aqoxy3G00999 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 8.3e-09 64.7 73 71.2
CAN.G781.29 Capsicum annuum HOM05D003549 ORTHO05D004223 8.3e-09 64.7 69 66.7
Manes.06G103400 Manihot esculenta HOM05D003549 ORTHO05D004223 8.3e-09 64.7 47 76.6
unitig_26.g9627 Utricularia gibba HOM05D000915 ORTHO05D001662 8.3e-09 64.7 68 66.2
Os01g0273000 Oryza sativa ssp. japonica HOM05D003549 ORTHO05D004223 1.1e-08 64.3 61 68.9
Peaxi162Scf00689g00329 Petunia axillaris HOM05D003549 ORTHO05D004223 1.1e-08 64.3 69 68.1
SalBow5G5409 Salvia bowleyana HOM05D003549 ORTHO05D004223 1.1e-08 64.3 64 70.3
Sc12g0005420 Simmondsia chinensis HOM05D003549 ORTHO05D004223 1.1e-08 64.3 67 73.1
AL8G14410 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 2.4e-08 63.2 71 67.6
Atru.chr9.2446 Acer truncatum HOM05D003549 ORTHO05D004223 5.4e-08 62.0 48 70.8
AL2G18990 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 1.2e-07 60.8 72 66.7
A02p23950 Brassica napus HOM05D003549 ORTHO05D004223 1.6e-07 60.5 70 68.6
CDE10G0156 Ceratophyllum demersum HOM05D003549 ORTHO05D004223 1.6e-07 60.5 69 65.2
Duzib068G0952 Durio zibethinus HOM05D003549 ORTHO05D004223 2.0e-07 60.1 75 61.3
BolC2t09796H Brassica oleracea HOM05D003549 ORTHO05D004223 2.7e-07 59.7 70 55.7
ECA247G2394 Erigeron canadensis HOM05D003549 ORTHO05D004223 4.6e-07 58.9 59 74.6
AUR62036487 Chenopodium quinoa HOM05D003549 ORTHO05D004223 7.8e-07 58.2 66 71.2
PGR083G2145 Punica granatum HOM05D003549 ORTHO05D004223 7.8e-07 58.2 71 66.2
CAN.G208.13 Capsicum annuum HOM05D003549 ORTHO05D004223 1.0e-06 57.8 46 67.4
Lalb_Chr11g0071151 Lupinus albus HOM05D003549 ORTHO05D004223 1.0e-06 57.8 68 67.6
EL10Ac5g10777 Beta vulgaris HOM05D003549 ORTHO05D004223 1.3e-06 57.4 66 71.2
C02p37800 Brassica napus HOM05D003549 ORTHO05D004223 1.7e-06 57.0 70 65.7
CBR_g8660 Chara braunii HOM05D003549 ORTHO05D004223 1.7e-06 57.0 60 65.0
CAN.G650.26 Capsicum annuum HOM05D003549 ORTHO05D004223 5.0e-06 55.5 46 65.2
AUR62037088 Chenopodium quinoa HOM05D003549 ORTHO05D004223 5.0e-06 55.5 66 69.7
AT5G45010 Arabidopsis thaliana HOM05D003549 ORTHO05D004223 6.6e-06 55.1 48 66.7
Carub.0003s3029 Capsella rubella HOM05D003549 ORTHO05D004223 8.6e-06 54.7 69 63.8
TPR.G37556 Trifolium pratense HOM05D003549 ORTHO05D004223 8.6e-06 54.7 61 70.5


User provided reference genes

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