Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 4378.2 2190 100.0
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 2828.9 2236 66.2
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2768.0 2238 64.2
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2706.4 2238 63.2
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2668.3 2234 62.5
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 2666.7 2255 62.0
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2632.8 2240 60.9
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2628.6 2240 60.8
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 2612.4 2237 61.7
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 2608.9 2239 61.7
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 2603.9 2240 61.2
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 2580.8 2230 61.2
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2572.7 2237 60.7
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 2572.0 2246 61.1
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 2567.3 2221 60.6
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2564.3 2242 60.8
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 2553.9 2233 60.1
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 2538.5 2233 60.2
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2528.1 2240 59.5
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 2523.0 2227 60.2
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2520.7 2207 59.9
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 2518.4 2232 59.6
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2516.9 2232 59.6
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2515.3 2260 59.5
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 2515.0 2227 60.0
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2513.0 2240 58.8
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2505.3 2245 59.2
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2499.5 2240 58.7
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2499.2 2244 59.0
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2495.3 2244 58.9
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2491.1 2243 59.4
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2481.4 2220 59.2
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 2478.0 2238 59.3
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2477.6 2230 58.4
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 2464.5 2224 58.3
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2462.2 2224 58.2
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2452.6 2232 58.9
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 2450.6 2240 58.6
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2443.3 2242 58.3
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 2392.5 2238 57.7
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2391.7 2243 57.9
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 2390.1 2236 57.6
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2388.6 2244 57.9
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2387.8 2246 56.6
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2387.1 2231 57.6
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 2386.3 2231 57.6
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2384.8 2252 57.0
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 2384.4 2216 57.8
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2382.4 2229 57.3
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 2380.1 2233 57.3
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2373.2 2237 56.9
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 2372.4 2245 57.2
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2371.3 2235 56.9
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 2343.2 2238 56.7
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2340.1 2242 56.2
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2338.9 2226 56.5
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2335.5 2273 56.2
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 2335.1 2237 56.6
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 2334.7 2220 57.0
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2333.1 2248 56.5
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 2327.0 2239 56.8
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2325.4 2247 55.2
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2299.2 2239 57.6
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2292.7 2232 55.9
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2287.7 2234 55.9
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2273.0 2235 55.7
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2264.2 2225 55.2
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2262.6 2224 54.9
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2260.7 2271 54.5
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2258.4 2229 54.8
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2253.0 2222 55.1
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2246.9 2224 55.2
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2239.2 2222 54.5
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2239.2 2222 54.5
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2230.7 2225 54.7
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2230.7 2225 54.7
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2218.0 2230 54.9
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2209.1 2338 51.7
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2125.5 1828 60.7
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2119.0 2225 53.0
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2117.0 1826 60.8
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2115.5 1838 60.6
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2098.2 1898 57.8
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2088.5 2056 56.0
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 2053.9 2344 50.1
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 2007.3 2236 50.1
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 1997.6 2227 50.7
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 1960.7 1723 60.1
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 1859.0 2201 49.0
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1725.3 2386 42.6
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1690.2 1427 63.1
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1584.3 1397 60.9
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1546.2 1702 50.3
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1427.2 2373 39.0
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1366.3 2168 39.9
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1355.1 2375 37.3
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1271.5 2271 36.9
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1218.8 1105 59.2
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1199.9 1023 61.9
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1151.0 1210 52.6
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1130.9 941 62.7
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1105.1 1068 55.1
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 2.1e-295 1020.4 1425 43.7
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 2.6e-290 1003.4 792 67.3
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 4.5e-282 976.1 1006 53.5
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 2.2e-236 824.3 2470 28.7
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 2.4e-219 767.7 872 48.2
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 5.2e-206 723.4 743 54.2
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 2.6e-197 694.5 1365 35.7
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 7.4e-168 596.7 1013 39.0
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 1.1e-147 529.6 2526 25.1
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 1.5e-123 449.5 439 51.9
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 1.5e-99 369.8 379 53.8
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 4.5e-80 305.1 330 51.8
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 3.6e-74 285.4 289 57.1
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 1.4e-70 273.5 306 50.7
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 1.4e-65 256.9 313 49.2
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 2.9e-63 249.2 232 57.3
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 1.3e-58 233.8 226 55.8
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 9.0e-57 227.6 765 26.8
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 2.4e-49 203.0 268 44.8
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 5.9e-40 171.8 178 55.1
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 2.7e-37 162.9 140 61.4
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 1.4e-36 160.6 224 46.0
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 2.6e-35 156.4 479 27.3
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 1.8e-33 150.2 99 74.7
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 1.2e-32 147.5 138 55.8
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 6.7e-28 131.7 252 33.3
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 9.1e-25 121.3 102 61.8
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 1.2e-21 110.9 113 50.4
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 3.0e-20 106.3 111 57.7
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 5.0e-15 89.0 113 40.7
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 9.8e-11 74.7 769 19.8


User provided reference genes

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