Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021618 Daucus carota HOM05D003858 ORTHO05D005878 3.1e-294 1014.6 564 100.0
DCAR_001872 Daucus carota HOM05D003858 ORTHO05D005878 2.0e-269 932.2 561 87.5
COL.COLO4_28121 Corchorus olitorius HOM05D003858 ORTHO05D005878 5.4e-214 748.0 576 70.7
Duzib205G0757 Durio zibethinus HOM05D003858 ORTHO05D005878 3.0e-212 742.3 570 70.7
Thecc.03G129000 Theobroma cacao HOM05D003858 ORTHO05D005878 4.3e-211 738.4 568 69.7
TWI23G0194 Tripterygium wilfordii HOM05D003858 ORTHO05D005878 1.1e-209 733.8 565 69.6
Gohir.D03G114300 Gossypium hirsutum HOM05D003858 ORTHO05D005878 1.4e-209 733.4 570 69.6
Manes.06G119400 Manihot esculenta HOM05D003858 ORTHO05D005878 2.3e-209 732.6 551 70.8
CSS0032323 Camellia sinensis var. sinensis HOM05D003858 ORTHO05D005878 3.4e-208 728.8 580 68.3
Gohir.A03G052800 Gossypium hirsutum HOM05D003858 ORTHO05D005878 8.3e-207 724.2 565 69.7
Rhsim10G0051500 Rhododendron simsii HOM05D003858 ORTHO05D005878 5.4e-206 721.5 559 68.9
vmacro16677 Vaccinium macrocarpon HOM05D003858 ORTHO05D005878 1.2e-205 720.3 527 71.7
Actinidia08869 Actinidia chinensis HOM05D003858 ORTHO05D005878 2.1e-205 719.5 504 73.0
CiPaw.12G042900 Carya illinoinensis HOM05D003858 ORTHO05D005878 2.1e-205 719.5 549 69.9
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 2.7e-205 719.2 536 71.6
Gorai.003G120600 Gossypium raimondii HOM05D003858 ORTHO05D005878 4.6e-205 718.4 569 68.7
ECA247G4076 Erigeron canadensis HOM05D003858 ORTHO05D005878 1.3e-204 716.8 555 69.0
Cc10_g13400 Coffea canephora HOM05D003858 ORTHO05D005878 2.3e-204 716.1 561 68.8
Rhsim12G0174400 Rhododendron simsii HOM05D003858 ORTHO05D005878 3.0e-204 715.7 541 69.5
Sabra15G0116900 Salix brachista HOM05D003858 ORTHO05D005878 3.0e-204 715.7 548 69.5
Atru.chr9.1128 Acer truncatum HOM05D003858 ORTHO05D005878 7.3e-203 711.1 545 69.0
Dinv23145 Davidia involucrata HOM05D003858 ORTHO05D005878 7.3e-203 711.1 569 68.0
HanXRQChr02g0034711 Helianthus annuus HOM05D003858 ORTHO05D005878 1.2e-202 710.3 550 69.6
Cpa.g.sc250.13 Carica papaya HOM05D003858 ORTHO05D005878 2.8e-202 709.1 487 74.3
CiPaw.15G056500 Carya illinoinensis HOM05D003858 ORTHO05D005878 4.7e-202 708.4 539 70.7
Potri.015G096100 Populus trichocarpa HOM05D003858 ORTHO05D005878 4.7e-202 708.4 553 68.9
SalBow6G4120 Salvia bowleyana HOM05D003858 ORTHO05D005878 4.7e-202 708.4 551 68.6
CsaV3_1G007630 Cucumis sativus L. HOM05D003858 ORTHO05D005878 4.0e-201 705.3 491 72.9
MELO3C002182.2 Cucumis melo HOM05D003858 ORTHO05D005878 6.8e-201 704.5 548 68.2
CANSAT80G0729 Cannabis sativa HOM05D003858 ORTHO05D005878 7.6e-200 701.0 553 67.8
TAR371G0204 Trochodendron aralioides HOM05D003858 ORTHO05D005878 1.7e-199 699.9 556 67.6
Lsat_1_v5_gn_1_28960 Lactuca sativa HOM05D003858 ORTHO05D005878 2.9e-199 699.1 497 73.6
Nitab4.5_0005642g0040 Nicotiana tabacum HOM05D003858 ORTHO05D005878 1.1e-198 697.2 520 70.6
Cfa015653 Carpinus fangiana HOM05D003858 ORTHO05D005878 3.5e-197 692.2 535 68.0
Sed0027713 Sechium edule HOM05D003858 ORTHO05D005878 3.5e-197 692.2 550 67.1
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 4.6e-197 691.8 563 67.3
arahy.Tifrunner.gnm1.ann1.L81EPG Arachis hypogaea HOM05D003858 ORTHO05D005878 7.8e-197 691.0 544 68.2
Nn4g22329 Nelumbo nucifera HOM05D003858 ORTHO05D005878 7.8e-197 691.0 566 66.1
Nitab4.5_0006042g0010 Nicotiana tabacum HOM05D003858 ORTHO05D005878 1.3e-196 690.3 544 67.6
Hma1.2p1_0014F.1_g009460 Hydrangea macrophylla HOM05D003858 ORTHO05D005878 1.7e-196 689.9 545 67.0
Haze_09759 Corylus avellana HOM05D003858 ORTHO05D005878 5.1e-196 688.3 573 65.6
arahy.Tifrunner.gnm1.ann1.LEEI49 Arachis hypogaea HOM05D003858 ORTHO05D005878 7.3e-195 684.5 540 67.8
RcHm_v2.0_Chr7g0190211 Rosa chinensis HOM05D003858 ORTHO05D005878 1.3e-194 683.7 501 71.3
Lj5C96T4 Lonicera japonica HOM05D003858 ORTHO05D005878 1.6e-194 683.3 530 69.4
Peaxi162Scf00119g00520 Petunia axillaris HOM05D003858 ORTHO05D005878 2.8e-194 682.6 515 69.3
SGA_v2.0_scaffold2G01192 Striga asiatica HOM05D003858 ORTHO05D005878 3.6e-194 682.2 575 66.3
SGA_v2.0_scaffold28G11963 Striga asiatica HOM05D003858 ORTHO05D005878 6.2e-194 681.4 516 70.3
CAN.G774.2 Capsicum annuum HOM05D003858 ORTHO05D005878 4.0e-193 678.7 571 64.4
Prupe.5G151200 Prunus persica HOM05D003858 ORTHO05D005878 4.0e-193 678.7 536 66.6
MD14G1157300 Malus domestica HOM05D003858 ORTHO05D005878 9.0e-193 677.6 537 66.3
Migut.N03254 Erythranthe guttata HOM05D003858 ORTHO05D005878 9.9e-192 674.1 483 71.8
Solyc08g080850.4 Solanum lycopersicum HOM05D003858 ORTHO05D005878 4.9e-191 671.8 576 63.7
FvH4_5g08310 Fragaria vesca HOM05D003858 ORTHO05D005878 6.4e-191 671.4 537 67.2
Sopen08g029150 Solanum pennellii HOM05D003858 ORTHO05D005878 6.4e-191 671.4 501 70.3
PGSC0003DMG400012349 Solanum tuberosum HOM05D003858 ORTHO05D005878 8.4e-191 671.0 574 63.8
FAN08G1590 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.4e-190 670.2 564 65.6
QL10p002959 Quercus lobata HOM05D003858 ORTHO05D005878 1.9e-190 669.8 566 65.5
Oeu001550.1 Olea europaea HOM05D003858 ORTHO05D005878 2.4e-190 669.5 550 65.6
Lalb_Chr01g0021111 Lupinus albus HOM05D003858 ORTHO05D005878 4.2e-190 668.7 531 68.2
Haze_07135 Corylus avellana HOM05D003858 ORTHO05D005878 2.7e-189 666.0 544 66.0
PSO478G4955 Papaver somniferum HOM05D003858 ORTHO05D005878 7.9e-189 664.5 542 66.1
Aqoxy3G00800 Aquilegia oxysepala HOM05D003858 ORTHO05D005878 1.0e-188 664.1 570 63.5
Glyma.18G230300 Glycine max HOM05D003858 ORTHO05D005878 1.7e-188 663.3 472 72.5
Hund02439 Selenicereus undatus HOM05D003858 ORTHO05D005878 1.9e-187 659.8 579 63.6
PSO017G3328 Papaver somniferum HOM05D003858 ORTHO05D005878 1.6e-186 656.8 542 65.3
PGR004G1062 Punica granatum HOM05D003858 ORTHO05D005878 2.1e-186 656.4 548 65.1
Lj1g0027711 Lotus japonicus HOM05D003858 ORTHO05D005878 2.8e-186 656.0 528 67.4
Phvul.008G067600 Phaseolus vulgaris HOM05D003858 ORTHO05D005878 1.4e-185 653.7 500 69.6
Ah.01g020640 Amaranthus hybridus HOM05D003858 ORTHO05D005878 2.4e-185 652.9 582 62.4
AUR62028258 Chenopodium quinoa HOM05D003858 ORTHO05D005878 6.9e-185 651.4 455 73.2
TPR.G2433 Trifolium pratense HOM05D003858 ORTHO05D005878 2.0e-184 649.8 529 67.1
Glyma.09G261800 Glycine max HOM05D003858 ORTHO05D005878 2.6e-184 649.4 531 66.5
THA.LOC104800505 Tarenaya hassleriana HOM05D003858 ORTHO05D005878 2.4e-182 642.9 484 67.8
Eucgr.E01497 Eucalyptus grandis HOM05D003858 ORTHO05D005878 1.2e-181 640.6 538 64.7
BcaB06g28028 Brassica carinata HOM05D003858 ORTHO05D005878 7.9e-181 637.9 487 67.1
SalBow7G4372 Salvia bowleyana HOM05D003858 ORTHO05D005878 1.8e-180 636.7 558 63.3
Sc10g0010460 Simmondsia chinensis HOM05D003858 ORTHO05D005878 6.7e-180 634.8 563 63.2
Medtr7g090710 Medicago truncatula HOM05D003858 ORTHO05D005878 8.7e-180 634.4 558 63.6
BraA04t17533Z Brassica rapa HOM05D003858 ORTHO05D005878 1.5e-179 633.6 490 67.3
BcaC02g08384 Brassica carinata HOM05D003858 ORTHO05D005878 2.5e-179 632.9 489 67.3
C04p54940 Brassica napus HOM05D003858 ORTHO05D005878 2.5e-179 632.9 489 67.3
Sp4g03970 Schrenkiella parvula HOM05D003858 ORTHO05D005878 4.3e-179 632.1 538 63.0
AT2G24990 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 5.6e-179 631.7 458 69.9
AL4G16080 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 7.4e-179 631.3 473 68.1
Thhalv10000120m.g Eutrema salsugineum HOM05D003858 ORTHO05D005878 2.1e-178 629.8 472 68.2
Carub.0004s0455 Capsella rubella HOM05D003858 ORTHO05D005878 3.7e-178 629.0 473 68.1
AT5G37350 Arabidopsis thaliana HOM05D003858 ORTHO05D005878 8.1e-178 627.9 564 61.7
CDE05G2345 Ceratophyllum demersum HOM05D003858 ORTHO05D005878 1.1e-177 627.5 572 61.5
A04p19370 Brassica napus HOM05D003858 ORTHO05D005878 1.4e-177 627.1 554 62.3
EL10Ac9g21903 Beta vulgaris HOM05D003858 ORTHO05D005878 1.8e-177 626.7 465 69.7
Aa31sc86G50 Aethionema arabicum HOM05D003858 ORTHO05D005878 6.9e-177 624.8 472 67.8
CARHR116740 Cardamine hirsuta HOM05D003858 ORTHO05D005878 1.2e-173 614.0 472 67.2
BolC4t27030H Brassica oleracea HOM05D003858 ORTHO05D005878 1.6e-173 613.6 552 62.0
VMungo1383G3568 Vigna mungo HOM05D003858 ORTHO05D005878 3.9e-172 609.0 498 65.1
FAN04G1110 Fragaria x ananassa HOM05D003858 ORTHO05D005878 3.7e-170 602.4 564 61.7
FAN18G4532 Fragaria x ananassa HOM05D003858 ORTHO05D005878 1.1e-169 600.9 539 62.7
ClCG01G014690 Citrullus lanatus HOM05D003858 ORTHO05D005878 4.3e-163 578.9 549 60.1
Aa31LG8G17300 Aethionema arabicum HOM05D003858 ORTHO05D005878 4.8e-162 575.5 469 64.6
AL7G45930 Arabidopsis lyrata HOM05D003858 ORTHO05D005878 3.1e-161 572.8 538 59.7
Psat3g110800 Pisum sativum HOM05D003858 ORTHO05D005878 1.2e-160 570.9 547 60.7
ATR0559G302 Amborella trichopoda HOM05D003858 ORTHO05D005878 3.4e-160 569.3 564 58.0
AUR62003032 Chenopodium quinoa HOM05D003858 ORTHO05D005878 3.4e-160 569.3 392 73.5
SEGI_19941 Sequoiadendron giganteum HOM05D003858 ORTHO05D005878 3.8e-159 565.8 546 56.4
VMungo1383G2243 Vigna mungo HOM05D003858 ORTHO05D005878 8.5e-159 564.7 543 58.7
unitig_21.g20184 Utricularia gibba HOM05D003858 ORTHO05D005878 3.2e-158 562.8 561 57.4
AUR62007839 Chenopodium quinoa HOM05D003858 ORTHO05D005878 3.6e-157 559.3 434 68.2
PSO170G6136 Papaver somniferum HOM05D003858 ORTHO05D005878 1.0e-156 557.8 528 59.7
Zm00001eb256840 Zea mays HOM05D003858 ORTHO05D005878 1.1e-153 547.7 562 56.8
Os07g0162300 Oryza sativa ssp. japonica HOM05D003858 ORTHO05D005878 1.2e-152 544.3 514 58.6
Zm00001eb103140 Zea mays HOM05D003858 ORTHO05D005878 1.2e-152 544.3 562 56.8
RcHm_v2.0_Chr5g0020401 Rosa chinensis HOM05D003858 ORTHO05D005878 3.4e-152 542.7 539 55.7
MBI07_g31017_MAGBIO Magnolia biondii HOM05D003858 ORTHO05D005878 4.5e-152 542.3 461 64.0
HPP92_020969 Vanilla planifolia HOM05D003858 ORTHO05D005878 5.0e-151 538.9 559 56.0
TAR629G0830 Trochodendron aralioides HOM05D003858 ORTHO05D005878 2.7e-149 533.1 459 63.0
Ca_07893_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 7.4e-147 525.0 465 63.0
TPR.G23280 Trifolium pratense HOM05D003858 ORTHO05D005878 4.1e-145 519.2 472 61.4
FvH4_5g16770 Fragaria vesca HOM05D003858 ORTHO05D005878 2.7e-141 506.5 526 54.4
FAN16G2509 Fragaria x ananassa HOM05D003858 ORTHO05D005878 6.7e-140 501.9 526 53.6
Mapoly0084s0039 Marchantia polymorpha HOM05D003858 ORTHO05D005878 1.3e-138 497.7 545 52.3
SMO117G0291 Selaginella moellendorffii HOM05D003858 ORTHO05D005878 8.2e-138 495.0 468 56.0
MD06G1142000 Malus domestica HOM05D003858 ORTHO05D005878 1.2e-136 491.1 458 59.0
FAN20G1682 Fragaria x ananassa HOM05D003858 ORTHO05D005878 6.3e-130 468.8 541 51.2
Medtr7g076710 Medicago truncatula HOM05D003858 ORTHO05D005878 2.1e-125 453.8 444 59.2
PSO724G1315 Papaver somniferum HOM05D003858 ORTHO05D005878 8.8e-124 448.4 536 51.9
PSO423G0213 Papaver somniferum HOM05D003858 ORTHO05D005878 7.5e-123 445.3 533 52.2
Medtr7g012400 Medicago truncatula HOM05D003858 ORTHO05D005878 6.3e-122 442.2 489 53.2
AagrBONN_evm.TU.Sc2ySwM_228.678 Anthoceros agrestis HOM05D003858 ORTHO05D005878 3.3e-118 429.9 488 49.2
PSO170G3101 Papaver somniferum HOM05D003858 ORTHO05D005878 7.3e-118 428.7 538 50.9
Lj7A11G39 Lonicera japonica HOM05D003858 ORTHO05D005878 9.5e-118 428.3 549 46.4
Pp3c21_1450 Physcomitrium patens HOM05D003858 ORTHO05D005878 2.3e-116 423.7 475 49.9
Lj7A12G16 Lonicera japonica HOM05D003858 ORTHO05D005878 9.2e-113 411.8 476 48.1
Cre13.g580900 Chlamydomonas reinhardtii HOM05D003858 ORTHO05D005878 1.7e-111 407.5 473 48.0
TPR.G21069 Trifolium pratense HOM05D003858 ORTHO05D005878 3.0e-111 406.8 520 50.2
SHI21468 Sapria himalayana HOM05D003858 ORTHO05D005878 4.3e-110 402.9 737 38.1
PSO724G0964 Papaver somniferum HOM05D003858 ORTHO05D005878 1.7e-106 391.0 548 46.7
PSO724G1140 Papaver somniferum HOM05D003858 ORTHO05D005878 1.1e-105 388.3 563 46.7
PRCOL_00003781 Prasinoderma coloniale HOM05D003858 ORTHO05D005878 6.0e-104 382.5 445 48.1
Ca_28300_v3 Cicer arietinum L. HOM05D003858 ORTHO05D005878 3.2e-97 360.1 391 54.7
MCO12G200 Micromonas commoda HOM05D003858 ORTHO05D005878 4.6e-96 356.3 384 50.3
PSO063G1302 Papaver somniferum HOM05D003858 ORTHO05D005878 1.5e-94 351.3 319 60.2
RcHm_v2.0_Chr5g0063241 Rosa chinensis HOM05D003858 ORTHO05D005878 5.8e-91 339.3 490 44.5
RcHm_v2.0_Chr5g0063291 Rosa chinensis HOM05D003858 ORTHO05D005878 1.6e-88 331.3 551 41.0
Zm00001eb256780 Zea mays HOM05D003858 ORTHO05D005878 1.5e-86 324.7 301 60.5
CBR_g61467 Chara braunii HOM05D003858 ORTHO05D005878 2.4e-84 317.4 334 51.2
SHI21367 Sapria himalayana HOM05D003858 ORTHO05D005878 6.8e-84 315.8 595 38.2
DCAR_029022 Daucus carota HOM05D003858 ORTHO05D005878 4.4e-83 313.2 477 41.7
Haze_27048 Corylus avellana HOM05D003858 ORTHO05D005878 1.3e-74 285.0 458 37.6
CDE05G1919 Ceratophyllum demersum HOM05D003858 ORTHO05D015239 2.4e-73 280.8 268 58.2
PSO421G0376 Papaver somniferum HOM05D003858 ORTHO05D015239 1.2e-67 261.9 389 44.2
Cfa023770 Carpinus fangiana HOM05D003858 ORTHO05D005878 5.8e-67 259.6 453 36.9
arahy.Tifrunner.gnm1.ann1.RIH0QL Arachis hypogaea HOM05D003858 ORTHO05D015239 2.9e-66 257.3 242 60.3
Actinidia36803 Actinidia chinensis HOM05D003858 ORTHO05D015239 1.2e-64 251.9 170 72.4
Actinidia36804 Actinidia chinensis HOM05D003858 ORTHO05D005878 8.7e-55 219.2 314 44.6
Cc10_g13370 Coffea canephora HOM05D003858 ORTHO05D015239 6.7e-39 166.4 96 78.1
FAN13G2455 Fragaria x ananassa HOM05D003858 ORTHO05D015239 1.1e-30 139.0 103 65.0
Medtr6g024025 Medicago truncatula HOM05D003858 ORTHO05D267118 1.6e-27 128.6 106 65.1
FAN08G1067 Fragaria x ananassa HOM05D003858 ORTHO05D015239 5.0e-26 123.6 262 37.0
Zm00001eb256800 Zea mays HOM05D003858 ORTHO05D033539 9.4e-25 119.4 135 55.6
AUR62028260 Chenopodium quinoa HOM05D008347 ORTHO05D006373 1.6e-24 118.6 93 71.0
FvH4_3g12461 Fragaria vesca HOM05D000004 ORTHO05D000002 5.7e-22 110.2 148 44.6
PSO675G5360 Papaver somniferum HOM05D003858 ORTHO05D015239 1.8e-20 105.1 221 42.1
CBR_g61468 Chara braunii HOM05D003858 ORTHO05D131775 1.7e-18 98.6 157 42.7
C08p38970 Brassica napus HOM05D003858 ORTHO05D033539 2.9e-18 97.8 147 44.2
FvH4_5g25261 Fragaria vesca HOM05D003858 ORTHO05D015239 1.5e-17 95.5 83 59.0
FAN08G1033 Fragaria x ananassa HOM05D003858 ORTHO05D005878 2.5e-17 94.7 71 66.2
BolC8t51470H Brassica oleracea HOM05D003858 ORTHO05D015239 1.2e-16 92.4 123 46.3
TAR625G0709 Trochodendron aralioides HOM05D003858 ORTHO05D015239 4.7e-16 90.5 45 86.7
COL.COLO4_09285 Corchorus olitorius HOM05D003858 ORTHO05D155188 1.8e-15 88.6 46 89.1
BolC8t51471H Brassica oleracea HOM05D003858 ORTHO05D033539 5.2e-15 87.0 147 41.5
FAN21G1362 Fragaria x ananassa HOM05D003858 ORTHO05D207154 1.8e-12 78.6 241 28.6
HanXRQChr13g0426321 Helianthus annuus HOM05D003858 ORTHO05D000008 4.1e-12 77.4 75 49.3
ECA247G3860 Erigeron canadensis HOM05D000031 ORTHO05D000030 2.5e-09 68.2 84 48.8
Zm00001eb256810 Zea mays HOM05D003858 ORTHO05D005878 4.2e-09 67.4 170 35.3
DCAR_007996 Daucus carota HOM05D003858 ORTHO05D176634 9.5e-09 66.2 50 60.0
ECA247G3834 Erigeron canadensis HOM05D000031 ORTHO05D000030 1.6e-08 65.5 108 41.7
BcaC07g40899 Brassica carinata HOM05D003858 ORTHO05D015239 1.5e-06 58.9 31 87.1
CiPaw.05G188800 Carya illinoinensis HOM05D003858 ORTHO05D127864 2.0e-06 58.5 29 86.2


User provided reference genes

Program Settings