Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021586 Daucus carota HOM05D003772 ORTHO05D004509 1.8e-55 219.2 126 100.0
Lj5A129G68 Lonicera japonica HOM05D003772 ORTHO05D010346 5.4e-15 84.7 91 58.2
Rhsim08G0177400 Rhododendron simsii HOM05D008378 ORTHO05D010346 1.6e-14 83.2 125 47.2
HanXRQChr02g0035801 Helianthus annuus HOM05D008378 ORTHO05D010346 8.7e-13 77.4 115 47.0
vmacro19302 Vaccinium macrocarpon HOM05D008378 ORTHO05D010346 1.5e-12 76.6 125 48.0
Dinv38528 Davidia involucrata HOM05D008378 ORTHO05D010346 5.6e-12 74.7 76 61.8
ECA247G3718 Erigeron canadensis HOM05D000048 ORTHO05D000207 7.4e-12 74.3 79 57.0
CiPaw.11G020600 Carya illinoinensis HOM05D008378 ORTHO05D010346 9.6e-12 73.9 128 43.8
Migut.D01994 Erythranthe guttata HOM05D008378 ORTHO05D010346 1.6e-11 73.2 107 51.4
MSTRG.23165 Avicennia marina HOM05D008378 ORTHO05D010346 2.1e-11 72.8 123 48.8
SalBow6G1615 Salvia bowleyana HOM05D008378 ORTHO05D010346 3.6e-11 72.0 96 50.0
TWI14G0631 Tripterygium wilfordii HOM05D008378 ORTHO05D010346 3.6e-11 72.0 81 58.0
Haze_07583 Corylus avellana HOM05D008378 ORTHO05D010346 4.8e-11 71.6 132 43.2
Lsat_1_v5_gn_1_27801 Lactuca sativa HOM05D000048 ORTHO05D000207 4.8e-11 71.6 116 44.8
QL10p006910 Quercus lobata HOM05D008378 ORTHO05D010346 3.1e-10 68.9 109 50.5
Prupe.8G004000 Prunus persica HOM05D008378 ORTHO05D010346 4.0e-10 68.6 85 51.8
AUR62008138 Chenopodium quinoa HOM05D008378 ORTHO05D010346 9.0e-10 67.4 81 50.6
AUR62028720 Chenopodium quinoa HOM05D008378 ORTHO05D010346 9.0e-10 67.4 81 50.6
Cc05_g07210 Coffea canephora HOM05D003772 ORTHO05D004509 1.2e-09 67.0 69 59.4
TAR624G0900 Trochodendron aralioides HOM05D003772 ORTHO05D004509 1.2e-09 67.0 72 55.6
HPP92_020246 Vanilla planifolia HOM05D003772 ORTHO05D004509 1.2e-09 67.0 76 55.3
Migut.O00155 Erythranthe guttata HOM05D008378 ORTHO05D010346 2.0e-09 66.2 126 41.3
PGR083G1326 Punica granatum HOM05D008378 ORTHO05D010346 2.0e-09 66.2 82 47.6
Aqoxy1G02411 Aquilegia oxysepala HOM05D003772 ORTHO05D004509 2.6e-09 65.9 72 52.8
EL10Ac5g10649 Beta vulgaris HOM05D008378 ORTHO05D010346 2.6e-09 65.9 81 49.4
Hma1.2p1_0046F.1_g027100 Hydrangea macrophylla HOM05D003772 ORTHO05D010346 3.4e-09 65.5 101 47.5
Actinidia11078 Actinidia chinensis HOM05D003772 ORTHO05D004509 4.5e-09 65.1 72 56.9
CSS0031333 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 4.5e-09 65.1 72 52.8
CsaV3_1G001040 Cucumis sativus L. HOM05D000048 ORTHO05D010346 4.5e-09 65.1 73 52.1
Dinv16953 Davidia involucrata HOM05D008378 ORTHO05D010346 4.5e-09 65.1 84 53.6
TAR626G1598 Trochodendron aralioides HOM05D003772 ORTHO05D004509 4.5e-09 65.1 72 56.9
HPP92_021377 Vanilla planifolia HOM05D003772 ORTHO05D004509 4.5e-09 65.1 76 52.6
CSS0020254 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 5.8e-09 64.7 72 52.8
CAN.G248.1 Capsicum annuum HOM05D003772 ORTHO05D004509 7.6e-09 64.3 69 59.4
SGA_v2.0_scaffold109G31121 Striga asiatica HOM05D003772 ORTHO05D004509 7.6e-09 64.3 69 56.5
Cfa019213 Carpinus fangiana HOM05D008378 ORTHO05D010346 9.9e-09 63.9 126 43.7
Nn1g04097 Nelumbo nucifera HOM05D003772 ORTHO05D004509 9.9e-09 63.9 72 56.9
MBI06_g33538_MAGBIO Magnolia biondii HOM05D003772 ORTHO05D004509 1.3e-08 63.5 76 47.4
Nitab4.5_0000638g0260 Nicotiana tabacum HOM05D003772 ORTHO05D004509 1.3e-08 63.5 65 58.5
Peaxi162Scf00132g00006 Petunia axillaris HOM05D003772 ORTHO05D004509 1.3e-08 63.5 69 56.5
THA.LOC104809774 Tarenaya hassleriana HOM05D008378 ORTHO05D010346 1.3e-08 63.5 76 55.3
Nitab4.5_0014741g0030 Nicotiana tabacum HOM05D003772 ORTHO05D004509 1.7e-08 63.2 69 56.5
Migut.F01269 Erythranthe guttata HOM05D003772 ORTHO05D004509 2.2e-08 62.8 72 55.6
Hma1.2p1_0002F.1_g001920 Hydrangea macrophylla HOM05D003772 ORTHO05D004509 2.2e-08 62.8 72 52.8
Lj8P111T15 Lonicera japonica HOM05D003772 ORTHO05D004509 2.2e-08 62.8 71 53.5
Oeu017493.1 Olea europaea HOM05D003772 ORTHO05D004509 2.2e-08 62.8 69 56.5
Solyc10g008310.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 2.2e-08 62.8 69 58.0
unitig_52.g17351 Utricularia gibba HOM05D003772 ORTHO05D004509 2.2e-08 62.8 98 46.9
Potri.015G083900 Populus trichocarpa HOM05D008378 ORTHO05D010346 2.9e-08 62.4 66 54.5
Peaxi162Scf00089g01344 Petunia axillaris HOM05D000048 ORTHO05D000207 3.8e-08 62.0 71 52.1
ClCG06G017410 Citrullus lanatus HOM05D008378 ORTHO05D010346 4.9e-08 61.6 73 49.3
Peaxi162Scf00059g00193 Petunia axillaris HOM05D003772 ORTHO05D004509 4.9e-08 61.6 69 53.6
COL.COLO4_30203 Corchorus olitorius HOM05D003772 ORTHO05D004509 6.4e-08 61.2 72 54.2
MELO3C029768.2 Cucumis melo HOM05D008378 ORTHO05D010346 6.4e-08 61.2 73 50.7
Nitab4.5_0000003g0800 Nicotiana tabacum HOM05D008378 ORTHO05D010346 6.4e-08 61.2 75 46.7
Solyc07g053930.1 Solanum lycopersicum HOM05D003772 ORTHO05D004509 6.4e-08 61.2 69 52.2
Sopen07g027910 Solanum pennellii HOM05D003772 ORTHO05D004509 6.4e-08 61.2 69 52.2
PGSC0003DMG400013145 Solanum tuberosum HOM05D003772 ORTHO05D004509 6.4e-08 61.2 69 56.5
unitig_62.g23166 Utricularia gibba HOM05D003772 ORTHO05D004509 6.4e-08 61.2 72 52.8
Lalb_Chr03g0029491 Lupinus albus HOM05D003772 ORTHO05D004509 8.4e-08 60.8 71 52.1
Nitab4.5_0013669g0010 Nicotiana tabacum HOM05D008378 ORTHO05D010346 8.4e-08 60.8 71 52.1
Duzib132G0444 Durio zibethinus HOM05D003772 ORTHO05D004509 1.1e-07 60.5 72 54.2
CSS0009217 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 1.4e-07 60.1 75 49.3
CSS0025212 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 1.4e-07 60.1 75 49.3
CSS0030564 Camellia sinensis var. sinensis HOM05D003772 ORTHO05D004509 1.4e-07 60.1 72 51.4
Cfa014621 Carpinus fangiana HOM05D003772 ORTHO05D004509 1.4e-07 60.1 72 52.8
Gohir.D02G179200 Gossypium hirsutum HOM05D003772 ORTHO05D004509 1.4e-07 60.1 72 54.2
SGA_v2.0_scaffold322G48628 Striga asiatica HOM05D003772 ORTHO05D004509 1.4e-07 60.1 69 55.1
MSTRG.14329 Avicennia marina HOM05D003772 ORTHO05D004509 1.9e-07 59.7 69 53.6
MSTRG.14330 Avicennia marina HOM05D003772 ORTHO05D004509 1.9e-07 59.7 69 53.6
PGSC0003DMG400018339 Solanum tuberosum HOM05D003772 ORTHO05D004509 1.9e-07 59.7 87 46.0
TWI59G0493 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 1.9e-07 59.7 71 53.5
Haze_13171 Corylus avellana HOM05D003772 ORTHO05D004509 2.4e-07 59.3 72 52.8
Lj3g0023444 Lotus japonicus HOM05D003772 ORTHO05D004509 2.4e-07 59.3 71 52.1
Medtr4g078240 Medicago truncatula HOM05D003772 ORTHO05D004509 2.4e-07 59.3 71 50.7
PSO675G9105 Papaver somniferum HOM05D003772 ORTHO05D004509 2.4e-07 59.3 71 50.7
Peaxi162Scf00057g00012 Petunia axillaris HOM05D008378 ORTHO05D010346 2.4e-07 59.3 76 50.0
PGR042G2646 Punica granatum HOM05D003772 ORTHO05D004509 2.4e-07 59.3 72 54.2
CiPaw.03G178000 Carya illinoinensis HOM05D003772 ORTHO05D004509 3.2e-07 58.9 72 52.8
Gohir.A03G156100 Gossypium hirsutum HOM05D003772 ORTHO05D004509 3.2e-07 58.9 72 52.8
Gorai.005G201000 Gossypium raimondii HOM05D003772 ORTHO05D004509 3.2e-07 58.9 72 52.8
Psat0s2365g0040 Pisum sativum HOM05D003772 ORTHO05D004509 3.2e-07 58.9 71 53.5
RcHm_v2.0_Chr6g0249651 Rosa chinensis HOM05D008378 ORTHO05D010346 3.2e-07 58.9 88 44.3
SalBow5G0298 Salvia bowleyana HOM05D008378 ORTHO05D010346 3.2e-07 58.9 116 39.7
TWI23G0933 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 3.2e-07 58.9 71 56.3
TAR629G1107 Trochodendron aralioides HOM05D003772 ORTHO05D004509 3.2e-07 58.9 85 47.1
EL10Ac9g20774 Beta vulgaris HOM05D003772 ORTHO05D004509 4.2e-07 58.5 88 44.3
SalBow5G3471 Salvia bowleyana HOM05D008378 ORTHO05D010346 4.2e-07 58.5 116 38.8
Sp6g03590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 4.2e-07 58.5 72 55.6
Aa31LG1G8940 Aethionema arabicum HOM05D003772 ORTHO05D004509 5.5e-07 58.2 72 51.4
Oeu007126.1 Olea europaea HOM05D003772 ORTHO05D004509 5.5e-07 58.2 65 53.8
Thecc.02G180700 Theobroma cacao HOM05D003772 ORTHO05D004509 5.5e-07 58.2 72 52.8
AT4G03600 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 7.1e-07 57.8 68 54.4
Duzib248G0440 Durio zibethinus HOM05D003772 ORTHO05D004509 7.1e-07 57.8 71 52.1
Os12g0295600 Oryza sativa ssp. japonica HOM05D003772 ORTHO05D004509 7.1e-07 57.8 88 44.3
Atru.chr6.2987 Acer truncatum HOM05D003772 ORTHO05D004509 9.3e-07 57.4 72 54.2
AL1G13270 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 9.3e-07 57.4 72 54.2
AT1G03730 Arabidopsis thaliana HOM05D003772 ORTHO05D004509 9.3e-07 57.4 72 54.2
Carub.0001s0283 Capsella rubella HOM05D003772 ORTHO05D004509 9.3e-07 57.4 72 54.2
DCAR_021247 Daucus carota HOM05D003772 ORTHO05D004509 9.3e-07 57.4 71 54.9
Nn1g06533 Nelumbo nucifera HOM05D003772 ORTHO05D004509 9.3e-07 57.4 68 48.5
CARHR003060 Cardamine hirsuta HOM05D003772 ORTHO05D004509 1.2e-06 57.0 72 52.8
DCAR_013015 Daucus carota HOM05D003772 ORTHO05D004509 1.2e-06 57.0 72 50.0
Dinv26410 Davidia involucrata HOM05D000001 ORTHO05D004509 1.2e-06 57.0 69 49.3
Glyma.06G292300 Glycine max HOM05D003772 ORTHO05D004509 1.2e-06 57.0 71 52.1
Sabra13G0108200 Salix brachista HOM05D003772 ORTHO05D004509 1.2e-06 57.0 70 50.0
Cc04_g11560 Coffea canephora HOM05D008378 ORTHO05D010346 1.6e-06 56.6 66 56.1
Thhalv10029253m.g Eutrema salsugineum HOM05D003772 ORTHO05D004509 1.6e-06 56.6 68 54.4
Manes.12G089142 Manihot esculenta HOM05D003772 ORTHO05D004509 1.6e-06 56.6 72 54.2
Manes.13G145756 Manihot esculenta HOM05D003772 ORTHO05D004509 1.6e-06 56.6 72 54.2
Manes.13G145808 Manihot esculenta HOM05D003772 ORTHO05D004509 1.6e-06 56.6 72 54.2
Manes.13G145811 Manihot esculenta HOM05D003772 ORTHO05D004509 1.6e-06 56.6 72 54.2
Manes.13G145890 Manihot esculenta HOM05D003772 ORTHO05D004509 1.6e-06 56.6 72 54.2
QL08p038995 Quercus lobata HOM05D003772 ORTHO05D004509 1.6e-06 56.6 72 51.4
SHI10396 Sapria himalayana HOM05D003772 ORTHO05D004509 1.6e-06 56.6 72 52.8
Sed0018072 Sechium edule HOM05D003772 ORTHO05D004509 1.6e-06 56.6 72 52.8
Atru.chr9.2574 Acer truncatum HOM05D003157 ORTHO05D004447 2.1e-06 56.2 76 48.7
Ciclev10016940m.g Citrus clementina HOM05D003772 ORTHO05D004509 2.1e-06 56.2 72 54.2
FvH4_6g26280 Fragaria vesca HOM05D003772 ORTHO05D004509 2.1e-06 56.2 72 50.0
FAN02G3561 Fragaria x ananassa HOM05D003772 ORTHO05D004509 2.1e-06 56.2 72 50.0
FAN05G4300 Fragaria x ananassa HOM05D003772 ORTHO05D004509 2.1e-06 56.2 72 50.0
FAN09G0390 Fragaria x ananassa HOM05D003772 ORTHO05D004509 2.1e-06 56.2 72 50.0
Glyma.12G113500 Glycine max HOM05D003772 ORTHO05D004509 2.1e-06 56.2 71 52.1
Lalb_Chr19g0135261 Lupinus albus HOM05D003772 ORTHO05D004509 2.1e-06 56.2 71 49.3
Prupe.3G132300 Prunus persica HOM05D003772 ORTHO05D004509 2.1e-06 56.2 72 50.0
MD09G1246800 Malus domestica HOM05D003772 ORTHO05D004509 2.7e-06 55.8 71 50.7
Manes.13G145815 Manihot esculenta HOM05D003772 ORTHO05D004509 2.7e-06 55.8 72 54.2
Manes.13G146061 Manihot esculenta HOM05D003772 ORTHO05D004509 2.7e-06 55.8 72 54.2
Potri.013G130300 Populus trichocarpa HOM05D003772 ORTHO05D004509 2.7e-06 55.8 72 51.4
PGSC0003DMG400018121 Solanum tuberosum HOM05D008378 ORTHO05D010346 2.7e-06 55.8 56 55.4
Sc10g0010230 Simmondsia chinensis HOM05D008378 ORTHO05D010346 3.5e-06 55.5 85 44.7
TPR.G28019 Trifolium pratense HOM05D003772 ORTHO05D004509 3.5e-06 55.5 71 49.3
VMungo1080G0856 Vigna mungo HOM05D003772 ORTHO05D004509 3.5e-06 55.5 71 50.7
Lsat_1_v5_gn_4_66640 Lactuca sativa HOM05D003772 ORTHO05D004509 4.6e-06 55.1 71 49.3
TWI14G0986 Tripterygium wilfordii HOM05D003772 ORTHO05D004509 4.6e-06 55.1 68 48.5
AL6G49180 Arabidopsis lyrata HOM05D003772 ORTHO05D004509 6.0e-06 54.7 72 52.8
BcaC07g42231 Brassica carinata HOM05D003772 ORTHO05D004509 6.0e-06 54.7 72 52.8
BcaC07g42232 Brassica carinata HOM05D003772 ORTHO05D004509 6.0e-06 54.7 72 52.8
BcaC07g42237 Brassica carinata HOM05D003772 ORTHO05D004509 6.0e-06 54.7 72 52.8
A09p68240 Brassica napus HOM05D003772 ORTHO05D004509 6.0e-06 54.7 72 52.8
C08p52680 Brassica napus HOM05D003772 ORTHO05D004509 6.0e-06 54.7 72 52.8
BolC8t52794H Brassica oleracea HOM05D003772 ORTHO05D004509 6.0e-06 54.7 72 52.8
BraA09t42159Z Brassica rapa HOM05D003772 ORTHO05D004509 6.0e-06 54.7 72 52.8
Phvul.011G119000 Phaseolus vulgaris HOM05D003772 ORTHO05D004509 6.0e-06 54.7 71 52.1
Sed0014985 Sechium edule HOM05D008378 ORTHO05D010346 6.0e-06 54.7 67 50.7
VMungo1127G0003 Vigna mungo HOM05D003772 ORTHO05D004509 6.0e-06 54.7 71 52.1
Aa31LG5G2950 Aethionema arabicum HOM05D003772 ORTHO05D004509 7.9e-06 54.3 72 51.4
BcaNung01575 Brassica carinata HOM05D003772 ORTHO05D004509 7.9e-06 54.3 72 47.2
Duzib052G1162 Durio zibethinus HOM05D003772 ORTHO05D004509 7.9e-06 54.3 72 48.6
Thhalv10015058m.g Eutrema salsugineum HOM05D008378 ORTHO05D010346 7.9e-06 54.3 77 46.8
Gohir.D01G016600 Gossypium hirsutum HOM05D003772 ORTHO05D004509 7.9e-06 54.3 71 52.1
Lsat_1_v5_gn_8_135800 Lactuca sativa HOM05D003772 ORTHO05D004509 7.9e-06 54.3 71 52.1
Sp1g02590 Schrenkiella parvula HOM05D003772 ORTHO05D004509 7.9e-06 54.3 72 51.4


User provided reference genes

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