Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021565 Daucus carota HOM05D003549 ORTHO05D004223 8.3e-30 133.3 78 100.0
DCAR_016492 Daucus carota HOM05D003549 ORTHO05D004223 2.6e-15 85.1 88 62.5
HanXRQChr16g0517241 Helianthus annuus HOM05D003549 ORTHO05D004223 7.5e-15 83.6 78 74.4
Nn8g39923 Nelumbo nucifera HOM05D003549 ORTHO05D004223 7.5e-15 83.6 63 73.0
Aqoxy3G00995 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 1.3e-14 82.8 78 66.7
CiPaw.11G028500 Carya illinoinensis HOM05D003549 ORTHO05D004223 1.7e-14 82.4 64 81.2
RcHm_v2.0_Chr7g0193821 Rosa chinensis HOM05D003549 ORTHO05D004223 1.7e-14 82.4 65 80.0
Cc04_g12860 Coffea canephora HOM05D003549 ORTHO05D004223 3.7e-14 81.3 73 69.9
Peaxi162Scf00017g02716 Petunia axillaris HOM05D003549 ORTHO05D004223 4.9e-14 80.9 76 69.7
FAN04G1549 Fragaria x ananassa HOM05D003549 ORTHO05D004223 6.3e-14 80.5 65 78.5
FAN08G2999 Fragaria x ananassa HOM05D003549 ORTHO05D004223 6.3e-14 80.5 65 78.5
FAN13G2761 Fragaria x ananassa HOM05D003549 ORTHO05D004223 6.3e-14 80.5 65 78.5
Lj6g0023924 Lotus japonicus HOM05D003549 ORTHO05D004223 6.3e-14 80.5 59 83.1
RcHm_v2.0_Chr7g0184521 Rosa chinensis HOM05D003549 ORTHO05D004223 6.3e-14 80.5 65 78.5
Lsat_1_v5_gn_4_74920 Lactuca sativa HOM05D003549 ORTHO05D004223 8.3e-14 80.1 76 67.1
CiPaw.12G025200 Carya illinoinensis HOM05D003549 ORTHO05D004223 1.1e-13 79.7 64 73.4
Ca_16195_v3 Cicer arietinum L. HOM05D003549 ORTHO05D004223 1.4e-13 79.3 76 71.1
Hma1.2p1_0176F.1_g077660 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 1.4e-13 79.3 61 80.3
Phvul.001G059000 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 1.8e-13 79.0 59 81.4
Nitab4.5_0000852g0140 Nicotiana tabacum HOM05D003549 ORTHO05D004223 2.4e-13 78.6 75 68.0
Nitab4.5_0003857g0060 Nicotiana tabacum HOM05D003549 ORTHO05D004223 2.4e-13 78.6 75 68.0
Hund03159 Selenicereus undatus HOM05D003549 ORTHO05D004223 2.4e-13 78.6 75 68.0
Lj1g0007079 Lotus japonicus HOM05D003549 ORTHO05D004223 3.2e-13 78.2 58 82.8
Glyma.17G198800 Glycine max HOM05D003549 ORTHO05D004223 4.1e-13 77.8 59 79.7
GSVIVG01032498001 Vitis vinifera HOM05D003549 ORTHO05D004223 4.1e-13 77.8 71 70.4
Zm00001eb332940 Zea mays HOM05D003549 ORTHO05D004223 4.1e-13 77.8 78 65.4
Phvul.009G179900 Phaseolus vulgaris HOM05D003549 ORTHO05D004223 5.4e-13 77.4 59 81.4
Haze_07495 Corylus avellana HOM05D003549 ORTHO05D004223 7.0e-13 77.0 65 78.5
FvH4_5g05150 Fragaria vesca HOM05D003549 ORTHO05D004223 7.0e-13 77.0 77 70.1
FAN18G4010 Fragaria x ananassa HOM05D003549 ORTHO05D004223 7.0e-13 77.0 77 70.1
SGA_v2.0_scaffold90G27958 Striga asiatica HOM05D000215 ORTHO05D003454 9.2e-13 76.6 73 57.5
Glyma.14G134200 Glycine max HOM05D003549 ORTHO05D004223 1.2e-12 76.3 61 75.4
Lalb_Chr08g0236401 Lupinus albus HOM05D003549 ORTHO05D004223 1.2e-12 76.3 71 73.2
Dinv33505 Davidia involucrata HOM05D003549 ORTHO05D004223 1.6e-12 75.9 69 60.9
MD06G1177000 Malus domestica HOM05D003549 ORTHO05D004223 1.6e-12 75.9 64 75.0
TAR629G2438 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.6e-12 75.9 65 69.2
PSO017G2368 Papaver somniferum HOM05D003549 ORTHO05D004223 2.0e-12 75.5 60 71.7
CsaV3_1G008390 Cucumis sativus L. HOM05D003549 ORTHO05D004223 2.7e-12 75.1 64 78.1
Glyma.04G181200 Glycine max HOM05D003549 ORTHO05D004223 2.7e-12 75.1 64 78.1
Glyma.06G183700 Glycine max HOM05D003549 ORTHO05D004223 2.7e-12 75.1 64 78.1
ECA232G0606 Erigeron canadensis HOM05D003549 ORTHO05D004223 3.5e-12 74.7 78 69.2
Duzib205G0517 Durio zibethinus HOM05D003549 ORTHO05D004223 4.6e-12 74.3 72 62.5
PSO832G2372 Papaver somniferum HOM05D003549 ORTHO05D004223 4.6e-12 74.3 75 64.0
unitig_26.g9627 Utricularia gibba HOM05D000915 ORTHO05D001662 4.6e-12 74.3 61 73.8
Migut.D01775 Erythranthe guttata HOM05D003549 ORTHO05D004223 5.9e-12 73.9 75 70.7
PSO063G4497 Papaver somniferum HOM05D003549 ORTHO05D004223 5.9e-12 73.9 75 61.3
PSO478G4862 Papaver somniferum HOM05D003549 ORTHO05D004223 5.9e-12 73.9 59 71.2
Psat5g114160 Pisum sativum HOM05D003549 ORTHO05D004223 5.9e-12 73.9 76 67.1
Solyc03g114170.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 5.9e-12 73.9 75 68.0
Sopen03g033240 Solanum pennellii HOM05D003549 ORTHO05D004223 5.9e-12 73.9 74 67.6
Actinidia19094 Actinidia chinensis HOM05D003549 ORTHO05D004223 7.8e-12 73.6 65 76.9
ClCG01G013030 Citrullus lanatus HOM05D003549 ORTHO05D004223 7.8e-12 73.6 62 74.2
MD14G1183200 Malus domestica HOM05D003549 ORTHO05D004223 7.8e-12 73.6 64 75.0
SalBow2G1727 Salvia bowleyana HOM05D003549 ORTHO05D004223 7.8e-12 73.6 73 58.9
PGSC0003DMG400024492 Solanum tuberosum HOM05D003549 ORTHO05D004223 7.8e-12 73.6 75 68.0
TAR622G0024 Trochodendron aralioides HOM05D003549 ORTHO05D004223 7.8e-12 73.6 65 76.9
TAR622G1417 Trochodendron aralioides HOM05D003549 ORTHO05D004223 7.8e-12 73.6 65 76.9
Oeu000929.1 Olea europaea HOM05D003549 ORTHO05D004223 1.3e-11 72.8 73 69.9
Sc04g0001880 Simmondsia chinensis HOM05D003549 ORTHO05D004223 1.3e-11 72.8 73 68.5
QL02p076964 Quercus lobata HOM05D003549 ORTHO05D004223 1.7e-11 72.4 62 71.0
THA.LOC109116495 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 1.7e-11 72.4 64 71.9
TWI81G0050 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.7e-11 72.4 69 62.3
TWI81G1057 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 1.7e-11 72.4 69 62.3
Peaxi162Scf00535g00046 Petunia axillaris HOM05D003549 ORTHO05D004223 2.3e-11 72.0 64 70.3
Rhsim12G0163400 Rhododendron simsii HOM05D003549 ORTHO05D004223 2.3e-11 72.0 63 63.5
Ciclev10023184m.g Citrus clementina HOM05D003549 ORTHO05D004223 2.9e-11 71.6 60 76.7
Ciclev10017382m.g Citrus clementina HOM05D003549 ORTHO05D004223 5.0e-11 70.9 59 76.3
TWI60G0590 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 5.0e-11 70.9 73 56.2
TWI15G0885 Tripterygium wilfordii HOM05D003549 ORTHO05D004223 6.6e-11 70.5 62 64.5
Actinidia33056 Actinidia chinensis HOM05D000215 ORTHO05D003454 8.6e-11 70.1 65 73.8
Sed0001837 Sechium edule HOM05D003549 ORTHO05D004223 8.6e-11 70.1 70 51.4
Actinidia04982 Actinidia chinensis HOM05D000215 ORTHO05D003454 1.1e-10 69.7 65 75.4
CSS0022405 Camellia sinensis var. sinensis HOM05D003549 ORTHO05D004223 1.1e-10 69.7 65 75.4
Dinv09155 Davidia involucrata HOM05D003549 ORTHO05D004223 1.1e-10 69.7 64 73.4
Nn2g12408 Nelumbo nucifera HOM05D003549 ORTHO05D004223 1.1e-10 69.7 65 69.2
Potri.001G334600 Populus trichocarpa HOM05D003549 ORTHO05D004223 1.1e-10 69.7 57 77.2
Sed0023520 Sechium edule HOM05D003549 ORTHO05D004223 1.5e-10 69.3 75 62.7
Aa31LG2G1940 Aethionema arabicum HOM05D003549 ORTHO05D004223 1.9e-10 68.9 62 69.4
DCAR_021678 Daucus carota HOM05D003549 ORTHO05D004223 1.9e-10 68.9 69 66.7
ClCG08G009420 Citrullus lanatus HOM05D003549 ORTHO05D004223 2.5e-10 68.6 70 61.4
MELO3C026538.2 Cucumis melo HOM05D003549 ORTHO05D004223 2.5e-10 68.6 70 61.4
CsaV3_6G031560 Cucumis sativus L. HOM05D003549 ORTHO05D004223 2.5e-10 68.6 70 61.4
Potri.017G066900 Populus trichocarpa HOM05D003549 ORTHO05D004223 2.5e-10 68.6 59 76.3
Duzib084G0774 Durio zibethinus HOM05D003549 ORTHO05D004223 4.3e-10 67.8 72 61.1
Prupe.5G175700 Prunus persica HOM05D003549 ORTHO05D004223 4.3e-10 67.8 64 70.3
MBI15_g31119_MAGBIO Magnolia biondii HOM05D003549 ORTHO05D004223 7.3e-10 67.0 63 73.0
Os01g0273000 Oryza sativa ssp. japonica HOM05D003549 ORTHO05D004223 7.3e-10 67.0 75 61.3
Solyc06g071390.3 Solanum lycopersicum HOM05D003549 ORTHO05D004223 7.3e-10 67.0 75 64.0
Sopen06g027670 Solanum pennellii HOM05D003549 ORTHO05D004223 7.3e-10 67.0 75 64.0
THA.LOC104805767 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 7.3e-10 67.0 64 68.8
Aqoxy3G00999 Aquilegia oxysepala HOM05D003549 ORTHO05D004223 9.5e-10 66.6 77 62.3
CAN.G628.73 Capsicum annuum HOM05D003549 ORTHO05D004223 9.5e-10 66.6 74 62.2
Rhsim08G0170600 Rhododendron simsii HOM05D003549 ORTHO05D004223 9.5e-10 66.6 65 61.5
PGSC0003DMG400027096 Solanum tuberosum HOM05D003549 ORTHO05D004223 9.5e-10 66.6 75 65.3
BcaB03g15337 Brassica carinata HOM05D003549 ORTHO05D004223 1.2e-09 66.2 55 72.7
Medtr3g078130 Medicago truncatula HOM05D003549 ORTHO05D004223 1.2e-09 66.2 64 70.3
FAN02G2804 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.1e-09 65.5 59 67.8
FAN05G0330 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.1e-09 65.5 59 67.8
FAN09G2996 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.1e-09 65.5 59 67.8
FAN09G4496 Fragaria x ananassa HOM05D003549 ORTHO05D004223 2.1e-09 65.5 59 67.8
Prupe.3G282400 Prunus persica HOM05D003549 ORTHO05D004223 2.1e-09 65.5 71 64.8
ECA246G5096 Erigeron canadensis HOM05D003549 ORTHO05D004223 2.8e-09 65.1 76 65.8
Gohir.A07G060300 Gossypium hirsutum HOM05D003549 ORTHO05D004223 2.8e-09 65.1 70 61.4
BcaB05g23601 Brassica carinata HOM05D003549 ORTHO05D004223 3.6e-09 64.7 64 57.8
RcHm_v2.0_Chr2g0170951 Rosa chinensis HOM05D003549 ORTHO05D004223 3.6e-09 64.7 71 62.0
arahy.Tifrunner.gnm1.ann1.G4GSC6 Arachis hypogaea HOM05D003549 ORTHO05D004223 8.0e-09 63.5 76 65.8
arahy.Tifrunner.gnm1.ann1.TT1NYY Arachis hypogaea HOM05D003549 ORTHO05D004223 8.0e-09 63.5 76 65.8
TAR371G0468 Trochodendron aralioides HOM05D003549 ORTHO05D004223 1.0e-08 63.2 60 71.7
THA.LOC104823782 Tarenaya hassleriana HOM05D003549 ORTHO05D004223 1.4e-08 62.8 59 66.1
AL8G14410 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 1.8e-08 62.4 67 64.2
Hma1.2p1_0802F.1_g220520 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 1.8e-08 62.4 58 58.6
A07p32720 Brassica napus HOM05D003549 ORTHO05D004223 2.3e-08 62.0 55 70.9
C06p38930 Brassica napus HOM05D003549 ORTHO05D004223 2.3e-08 62.0 55 70.9
BolC6t38985H Brassica oleracea HOM05D003549 ORTHO05D004223 2.3e-08 62.0 55 70.9
BraA07t30898Z Brassica rapa HOM05D003549 ORTHO05D004223 2.3e-08 62.0 55 70.9
Cpa.g.sc124.38 Carica papaya HOM05D003549 ORTHO05D004223 3.1e-08 61.6 75 60.0
FvH4_6g50520 Fragaria vesca HOM05D003549 ORTHO05D004223 3.1e-08 61.6 59 64.4
FAN14G1319 Fragaria x ananassa HOM05D003549 ORTHO05D004223 3.1e-08 61.6 59 64.4
HPP92_002194 Vanilla planifolia HOM05D003549 ORTHO05D004223 5.2e-08 60.8 59 66.1
ECA247G2394 Erigeron canadensis HOM05D003549 ORTHO05D004223 6.8e-08 60.5 70 65.7
SMO145G0027 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 6.8e-08 60.5 77 57.1
Thecc.03G009800 Theobroma cacao HOM05D003549 ORTHO05D004223 6.8e-08 60.5 75 58.7
SMO139G0002 Selaginella moellendorffii HOM05D003549 ORTHO05D004223 8.9e-08 60.1 77 57.1
TPR.G30392 Trifolium pratense HOM05D003549 ORTHO05D004223 8.9e-08 60.1 71 63.4
CARHR049490 Cardamine hirsuta HOM05D003549 ORTHO05D004223 1.2e-07 59.7 75 57.3
Manes.14G067300 Manihot esculenta HOM05D003549 ORTHO05D004223 2.0e-07 58.9 67 70.1
Sp5g19250 Schrenkiella parvula HOM05D003549 ORTHO05D004223 2.0e-07 58.9 62 64.5
Sc12g0005420 Simmondsia chinensis HOM05D003549 ORTHO05D004223 2.0e-07 58.9 63 68.3
AL2G18990 Arabidopsis lyrata HOM05D003549 ORTHO05D004223 3.4e-07 58.2 64 62.5
BolC2t09796H Brassica oleracea HOM05D003549 ORTHO05D004223 3.4e-07 58.2 79 51.9
SalBow5G5409 Salvia bowleyana HOM05D003549 ORTHO05D004223 3.4e-07 58.2 72 55.6
CAN.G781.29 Capsicum annuum HOM05D003549 ORTHO05D004223 4.4e-07 57.8 73 57.5
COL.COLO4_34052 Corchorus olitorius HOM05D003549 ORTHO05D004223 5.8e-07 57.4 75 61.3
Duzib068G0952 Durio zibethinus HOM05D003549 ORTHO05D004223 5.8e-07 57.4 80 58.8
Atru.chr9.2446 Acer truncatum HOM05D003549 ORTHO05D004223 1.3e-06 56.2 38 76.3
A02p23950 Brassica napus HOM05D003549 ORTHO05D004223 1.3e-06 56.2 65 64.6
Peaxi162Scf00689g00329 Petunia axillaris HOM05D003549 ORTHO05D004223 1.3e-06 56.2 75 61.3
Thhalv10022469m.g Eutrema salsugineum HOM05D003549 ORTHO05D004223 2.9e-06 55.1 77 58.4
HPP92_011135 Vanilla planifolia HOM05D003549 ORTHO05D004223 2.9e-06 55.1 104 42.3
Mapoly0025s0126 Marchantia polymorpha HOM05D003549 ORTHO05D004223 3.7e-06 54.7 68 51.5
C02p37800 Brassica napus HOM05D003549 ORTHO05D004223 4.9e-06 54.3 79 57.0
CBR_g8660 Chara braunii HOM05D003549 ORTHO05D004223 8.3e-06 53.5 66 54.5
Hma1.2p1_0967F.1_g242260 Hydrangea macrophylla HOM05D003549 ORTHO05D004223 8.3e-06 53.5 70 48.6


User provided reference genes

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