Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021525 Daucus carota HOM05D005938 ORTHO05D007654 1.9e-170 602.4 307 100.0
CSS0017360 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 2.4e-109 399.4 295 70.8
CSS0040883 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 2.4e-109 399.4 295 70.8
Lj9A462G75 Lonicera japonica HOM05D005938 ORTHO05D007654 2.4e-109 399.4 303 67.7
Rhsim12G0157100 Rhododendron simsii HOM05D005938 ORTHO05D007654 8.1e-105 384.4 307 65.8
Atru.chr9.2268 Acer truncatum HOM05D005938 ORTHO05D007654 5.2e-104 381.7 308 65.6
MSTRG.9633 Avicennia marina HOM05D005938 ORTHO05D007654 1.2e-103 380.6 310 63.9
CAN.G407.117 Capsicum annuum HOM05D005938 ORTHO05D007654 1.5e-103 380.2 277 68.2
TAR622G1433 Trochodendron aralioides HOM05D005938 ORTHO05D007654 2.6e-103 379.4 305 66.6
Actinidia34992 Actinidia chinensis HOM05D005938 ORTHO05D007654 3.8e-102 375.6 306 65.4
Nitab4.5_0004103g0010 Nicotiana tabacum HOM05D005938 ORTHO05D007654 4.9e-102 375.2 281 66.2
TAR374G0085 Trochodendron aralioides HOM05D005938 ORTHO05D007654 4.9e-102 375.2 292 67.1
QL10p016543 Quercus lobata HOM05D005938 ORTHO05D007654 2.4e-101 372.9 304 65.8
Sc10g0009920 Simmondsia chinensis HOM05D005938 ORTHO05D007654 3.2e-101 372.5 309 63.8
PGSC0003DMG400000598 Solanum tuberosum HOM05D005938 ORTHO05D007654 5.4e-101 371.7 281 65.8
vmacro16554 Vaccinium macrocarpon HOM05D005938 ORTHO05D007654 5.4e-101 371.7 333 61.3
Nn3g17204 Nelumbo nucifera HOM05D005938 ORTHO05D007654 1.6e-100 370.2 276 67.8
Lalb_Chr08g0235801 Lupinus albus HOM05D005938 ORTHO05D007654 2.1e-100 369.8 308 63.6
GSVIVG01008024001 Vitis vinifera HOM05D005938 ORTHO05D007654 7.8e-100 367.9 281 67.6
Lj1g0012745 Lotus japonicus HOM05D005938 ORTHO05D007654 1.0e-99 367.5 304 63.2
Glyma.06G192800 Glycine max HOM05D005938 ORTHO05D007654 2.3e-99 366.3 306 63.4
Sed0010411 Sechium edule HOM05D005938 ORTHO05D007654 2.3e-99 366.3 307 63.2
TWI15G1099 Tripterygium wilfordii HOM05D005938 ORTHO05D007654 3.0e-99 365.9 282 66.7
COL.COLO4_24542 Corchorus olitorius HOM05D005938 ORTHO05D007654 6.6e-99 364.8 308 62.7
Cfa018959 Carpinus fangiana HOM05D005938 ORTHO05D007654 8.7e-99 364.4 276 68.1
CiPaw.11G042800 Carya illinoinensis HOM05D005938 ORTHO05D007654 8.7e-99 364.4 305 62.3
Ca_13688_v3 Cicer arietinum L. HOM05D005938 ORTHO05D007654 8.7e-99 364.4 306 63.7
Solyc03g116330.3 Solanum lycopersicum HOM05D005938 ORTHO05D007654 8.7e-99 364.4 281 64.8
Ciclev10021191m.g Citrus clementina HOM05D005938 ORTHO05D007654 2.5e-98 362.8 310 64.2
Oeu016169.1 Olea europaea HOM05D005938 ORTHO05D007654 4.3e-98 362.1 283 66.4
CsaV3_1G002270 Cucumis sativus L. HOM05D005938 ORTHO05D007654 5.6e-98 361.7 307 62.5
Peaxi162Scf00274g00846 Petunia axillaris HOM05D005938 ORTHO05D007654 9.6e-98 360.9 287 63.4
Prupe.5G190900 Prunus persica HOM05D005938 ORTHO05D007654 9.6e-98 360.9 291 65.3
MELO3C017167.2 Cucumis melo HOM05D005938 ORTHO05D007654 1.3e-97 360.5 307 62.9
SalBow7G2600 Salvia bowleyana HOM05D005938 ORTHO05D007654 1.3e-97 360.5 298 62.4
Nitab4.5_0002257g0140 Nicotiana tabacum HOM05D005938 ORTHO05D007654 1.6e-97 360.1 309 60.5
Potri.018G047400 Populus trichocarpa HOM05D005938 ORTHO05D007654 1.6e-97 360.1 302 64.2
Eucgr.A02632 Eucalyptus grandis HOM05D005938 ORTHO05D007654 3.6e-97 359.0 309 61.8
EL10Ac5g10981 Beta vulgaris HOM05D005938 ORTHO05D007654 6.2e-97 358.2 280 66.1
arahy.Tifrunner.gnm1.ann1.VVHC1U Arachis hypogaea HOM05D005938 ORTHO05D007654 8.1e-97 357.8 282 64.2
CANSAT80G1410 Cannabis sativa HOM05D005938 ORTHO05D007654 1.4e-96 357.1 291 63.9
Sopen03g035260 Solanum pennellii HOM05D005938 ORTHO05D007654 1.4e-96 357.1 272 65.4
Ah.02g113360 Amaranthus hybridus HOM05D005938 ORTHO05D007654 2.4e-96 356.3 279 65.6
arahy.Tifrunner.gnm1.ann1.KGI6NM Arachis hypogaea HOM05D005938 ORTHO05D007654 4.0e-96 355.5 282 63.8
AUR62021711 Chenopodium quinoa HOM05D005938 ORTHO05D007654 5.3e-96 355.1 282 64.9
Hund09357 Selenicereus undatus HOM05D005938 ORTHO05D007654 6.9e-96 354.8 282 64.9
FvH4_5g15170 Fragaria vesca HOM05D005938 ORTHO05D007654 9.0e-96 354.4 280 65.4
Phvul.009G188150 Phaseolus vulgaris HOM05D005938 ORTHO05D007654 9.0e-96 354.4 316 60.4
PGR083G1660 Punica granatum HOM05D005938 ORTHO05D007654 9.0e-96 354.4 306 60.5
Migut.D01830 Erythranthe guttata HOM05D005938 ORTHO05D007654 1.5e-95 353.6 281 65.1
AUR62008387 Chenopodium quinoa HOM05D005938 ORTHO05D007654 2.0e-95 353.2 282 64.9
MD14G1198100 Malus domestica HOM05D005938 ORTHO05D007654 3.4e-95 352.4 309 60.8
Sabra18G0045600 Salix brachista HOM05D005938 ORTHO05D007654 4.5e-95 352.1 277 66.8
FAN08G1160 Fragaria x ananassa HOM05D005938 ORTHO05D007654 9.9e-95 350.9 305 61.0
Atru.BG.195.p Acer truncatum HOM05D005938 ORTHO05D007654 1.3e-94 350.5 273 66.7
ECA246G4427 Erigeron canadensis HOM05D005938 ORTHO05D007654 1.3e-94 350.5 307 59.6
Cc04_g16920 Coffea canephora HOM05D005938 ORTHO05D007654 1.7e-94 350.1 300 61.0
RcHm_v2.0_Chr7g0181011 Rosa chinensis HOM05D005938 ORTHO05D007654 1.7e-94 350.1 301 62.8
TPR.G11812 Trifolium pratense HOM05D005938 ORTHO05D007654 2.2e-94 349.7 280 63.6
Gohir.D12G179280 Gossypium hirsutum HOM05D005938 ORTHO05D007654 4.9e-94 348.6 305 61.0
ATR0564G381 Amborella trichopoda HOM05D005938 ORTHO05D007654 6.4e-94 348.2 308 60.7
MD06G1191700 Malus domestica HOM05D005938 ORTHO05D007654 5.4e-93 345.1 309 60.8
CARHR067810 Cardamine hirsuta HOM05D005938 ORTHO05D007654 9.3e-93 344.4 285 61.1
FAN18G0122 Fragaria x ananassa HOM05D005938 ORTHO05D007654 9.3e-93 344.4 274 65.3
Cpa.g.c30141.1 Carica papaya HOM05D005938 ORTHO05D007654 4.6e-92 342.0 279 63.4
PSO063G3647 Papaver somniferum HOM05D005938 ORTHO05D007654 6.0e-92 341.7 293 61.4
HanXRQChr05g0158101 Helianthus annuus HOM05D005938 ORTHO05D007654 7.9e-92 341.3 306 58.8
Gohir.A12G176500 Gossypium hirsutum HOM05D005938 ORTHO05D007654 1.0e-91 340.9 303 59.1
AL2G34410 Arabidopsis lyrata HOM05D005938 ORTHO05D007654 1.3e-91 340.5 300 57.3
Thhalv10018904m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 1.7e-91 340.1 297 58.9
FAN13G2109 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.7e-91 340.1 299 61.5
Sp5g29710 Schrenkiella parvula HOM05D005938 ORTHO05D007654 2.3e-91 339.7 307 58.0
unitig_744.g24387 Utricularia gibba HOM05D005938 ORTHO05D007654 5.6e-90 335.1 277 61.7
Carub.0002s2133 Capsella rubella HOM05D005938 ORTHO05D007654 9.6e-90 334.3 300 57.7
A07p40340 Brassica napus HOM05D005938 ORTHO05D007654 1.3e-89 334.0 300 58.7
FAN04G0099 Fragaria x ananassa HOM05D005938 ORTHO05D007654 3.6e-89 332.4 296 61.1
ClCG06G016260 Citrullus lanatus HOM05D005938 ORTHO05D007654 3.1e-88 329.3 307 61.2
CDE02G0021 Ceratophyllum demersum HOM05D005938 ORTHO05D007654 6.9e-88 328.2 278 61.2
BcaC08g46886 Brassica carinata HOM05D005938 ORTHO05D007654 1.5e-87 327.0 273 61.2
Lsat_1_v5_gn_5_19401 Lactuca sativa HOM05D005938 ORTHO05D007654 1.5e-87 327.0 280 59.6
BcaC08g46988 Brassica carinata HOM05D005938 ORTHO05D007654 3.4e-87 325.9 290 59.0
Os08g0171000 Oryza sativa ssp. japonica HOM05D005938 ORTHO05D007654 4.9e-86 322.0 295 56.9
BraA07t31575Z Brassica rapa HOM05D005938 ORTHO05D007654 3.2e-85 319.3 325 54.8
Dinv38693 Davidia involucrata HOM05D005938 ORTHO05D007654 9.3e-85 317.8 249 69.5
SEGI_36934 Sequoiadendron giganteum HOM05D005938 ORTHO05D007654 1.2e-84 317.4 312 53.8
SGA_v2.0_scaffold114G31898 Striga asiatica HOM05D005938 ORTHO05D007654 1.2e-84 317.4 277 59.9
THA.LOC104812546 Tarenaya hassleriana HOM05D005938 ORTHO05D007654 4.6e-84 315.5 300 54.3
Duzib205G1012 Durio zibethinus HOM05D005938 ORTHO05D007654 3.0e-83 312.8 305 58.4
Thecc.03G084300 Theobroma cacao HOM05D005938 ORTHO05D007654 9.6e-82 307.8 304 55.9
Aqoxy3G03351 Aquilegia oxysepala HOM05D005938 ORTHO05D007654 2.8e-81 306.2 275 60.0
Psat5g187160 Pisum sativum HOM05D005938 ORTHO05D007654 3.7e-81 305.8 273 60.8
BcaC08g46884 Brassica carinata HOM05D005938 ORTHO05D007654 4.8e-81 305.4 300 56.7
Aa31LG7G3570 Aethionema arabicum HOM05D005938 ORTHO05D007654 1.5e-79 300.4 289 54.0
Gorai.008G192300 Gossypium raimondii HOM05D005938 ORTHO05D007654 2.9e-78 296.2 281 56.6
Manes.06G094000 Manihot esculenta HOM05D005938 ORTHO05D007654 6.5e-78 295.0 281 56.9
SHI04241 Sapria himalayana HOM05D005938 ORTHO05D007654 2.4e-72 276.6 340 47.4
Mapoly0002s0073 Marchantia polymorpha HOM05D005938 ORTHO05D007654 5.3e-72 275.4 281 52.0
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 1.3e-70 270.8 349 49.3
C06p48680 Brassica napus HOM05D005938 ORTHO05D007654 6.5e-70 268.5 218 61.9
Aa31LG4G4790 Aethionema arabicum HOM05D005938 ORTHO05D007654 1.1e-69 267.7 240 58.3
Medtr0036s0320 Medicago truncatula HOM05D005938 ORTHO05D007654 1.4e-69 267.3 208 65.9
CSS0050188 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 3.9e-67 259.2 205 67.8
AT1G74530 Arabidopsis thaliana HOM05D005938 ORTHO05D007654 3.3e-66 256.1 239 58.6
BolC6t39901H Brassica oleracea HOM05D005938 ORTHO05D007654 7.4e-66 255.0 228 59.2
Hma1.2p1_0735F.1_g210490 Hydrangea macrophylla HOM05D005938 ORTHO05D007654 4.5e-63 245.7 184 67.4
Pp3c17_15280 Physcomitrium patens HOM05D005938 ORTHO05D007654 3.8e-62 242.7 288 47.2
AagrBONN_evm.TU.Sc2ySwM_117.1670 Anthoceros agrestis HOM05D005938 ORTHO05D007654 1.1e-61 241.1 278 48.6
VMungo1309G2195 Vigna mungo HOM05D005938 ORTHO05D007654 1.4e-59 234.2 216 60.6
SMO270G0117 Selaginella moellendorffii HOM05D005938 ORTHO05D007654 5.1e-59 232.3 277 47.3
CBR_g66809 Chara braunii HOM05D005938 ORTHO05D007654 3.1e-56 223.0 288 43.1
MBI02_g23681_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 1.2e-55 221.1 185 63.2
FAN10G3346 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.8e-51 207.2 157 68.2
Zm00001eb415000 Zea mays HOM05D005938 ORTHO05D007654 5.9e-47 192.2 176 59.7
Glyma.04G170700 Glycine max HOM05D005938 ORTHO05D007654 2.6e-42 176.8 140 66.4
arahy.Tifrunner.gnm1.ann1.518D86 Arachis hypogaea HOM05D005938 ORTHO05D007654 1.1e-32 144.8 149 52.3
MCO16G029 Micromonas commoda HOM05D005938 ORTHO05D007654 4.5e-31 139.4 295 32.9
FAN18G0131 Fragaria x ananassa HOM05D005938 ORTHO05D007654 5.0e-30 136.0 166 50.6
QL07p001114 Quercus lobata HOM05D005938 ORTHO05D007654 6.8e-27 125.6 186 46.2
CSS0038577 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 8.8e-27 125.2 84 67.9
MBI15_g27838_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 2.6e-26 123.6 194 42.8
FAN01G1759 Fragaria x ananassa HOM05D005938 ORTHO05D007654 1.6e-23 114.4 84 67.9
Medtr3g040450 Medicago truncatula HOM05D005938 ORTHO05D007654 5.9e-23 112.5 100 61.0
Cre12.g513300 Chlamydomonas reinhardtii HOM05D005938 ORTHO05D007654 1.0e-22 111.7 223 33.6
PRCOL_00003564 Prasinoderma coloniale HOM05D005938 ORTHO05D007654 5.0e-22 109.4 284 33.1
Prupe.5G190800 Prunus persica HOM05D005938 ORTHO05D007654 1.9e-21 107.5 89 61.8
MD17G1094500 Malus domestica HOM05D005938 ORTHO05D007654 1.2e-20 104.8 79 67.1
VMungo0019G0001 Vigna mungo HOM05D005938 ORTHO05D007654 1.4e-19 101.3 99 57.6
QL02p071402 Quercus lobata HOM05D005938 ORTHO05D028155 2.6e-18 97.1 69 66.7
QL12p034017 Quercus lobata HOM05D000176 ORTHO05D000106 1.3e-17 94.7 68 66.2
Thhalv10000377m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 3.5e-07 60.1 92 39.1


User provided reference genes

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