Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021507 Daucus carota HOM05D006469 ORTHO05D008034 1.2e-171 606.3 291 100.0
Dinv33650 Davidia involucrata HOM05D006469 ORTHO05D008034 1.1e-79 300.8 307 49.8
Sopen03g006220 Solanum pennellii HOM05D006469 ORTHO05D008034 4.0e-77 292.4 310 48.1
CAN.G1817.1 Capsicum annuum HOM05D006469 ORTHO05D008034 6.8e-77 291.6 304 49.0
Solyc03g033470.3 Solanum lycopersicum HOM05D006469 ORTHO05D008034 1.2e-76 290.8 310 48.1
Lj4A220G94 Lonicera japonica HOM05D006469 ORTHO05D008034 4.8e-75 285.4 310 49.0
GSVIVG01018765001 Vitis vinifera HOM05D006469 ORTHO05D008034 5.4e-74 282.0 301 49.8
Lsat_1_v5_gn_2_76041 Lactuca sativa HOM05D006469 ORTHO05D008034 2.7e-73 279.6 304 49.7
PGSC0003DMG402022530 Solanum tuberosum HOM05D006469 ORTHO05D008034 2.7e-73 279.6 315 46.0
CSS0000310 Camellia sinensis var. sinensis HOM05D006469 ORTHO05D008034 2.3e-72 276.6 279 51.3
TAR376G0066 Trochodendron aralioides HOM05D006469 ORTHO05D008034 2.9e-72 276.2 304 48.0
CSS0021178 Camellia sinensis var. sinensis HOM05D006469 ORTHO05D008034 1.5e-71 273.9 279 50.9
Migut.L00672 Erythranthe guttata HOM05D006469 ORTHO05D008034 7.2e-71 271.6 312 45.5
Cc07_g10870 Coffea canephora HOM05D006469 ORTHO05D008034 1.8e-69 266.9 307 46.3
Migut.L00699 Erythranthe guttata HOM05D006469 ORTHO05D008034 1.8e-69 266.9 312 44.9
SalBow5G1778 Salvia bowleyana HOM05D006469 ORTHO05D008034 5.2e-69 265.4 303 45.9
HanXRQChr04g0119941 Helianthus annuus HOM05D006469 ORTHO05D008034 1.2e-68 264.2 303 47.2
QL06p050655 Quercus lobata HOM05D006469 ORTHO05D008034 4.4e-68 262.3 308 44.2
QL06p050760 Quercus lobata HOM05D006469 ORTHO05D008034 4.4e-68 262.3 308 44.2
MSTRG.3610 Avicennia marina HOM05D006469 ORTHO05D008034 1.3e-67 260.8 312 44.2
CsaV3_6G047220 Cucumis sativus L. HOM05D006469 ORTHO05D008034 1.7e-67 260.4 304 44.1
Manes.02G105600 Manihot esculenta HOM05D006469 ORTHO05D008034 4.9e-67 258.8 308 45.8
CiPaw.07G059900 Carya illinoinensis HOM05D006469 ORTHO05D008034 6.3e-67 258.5 315 43.8
MELO3C007914.2 Cucumis melo HOM05D006469 ORTHO05D008034 1.1e-66 257.7 304 43.8
Gohir.A02G171200 Gossypium hirsutum HOM05D006469 ORTHO05D008034 5.4e-66 255.4 309 43.4
MD02G1130100 Malus domestica HOM05D006469 ORTHO05D008034 5.4e-66 255.4 303 47.2
Thecc.01G016800 Theobroma cacao HOM05D006469 ORTHO05D008034 5.4e-66 255.4 309 45.0
Gohir.D03G008900 Gossypium hirsutum HOM05D006469 ORTHO05D008034 2.7e-65 253.1 309 43.0
Sc07g0001050 Simmondsia chinensis HOM05D006469 ORTHO05D008034 5.9e-65 251.9 310 42.3
Ciclev10026134m.g Citrus clementina HOM05D006469 ORTHO05D008034 1.0e-64 251.1 303 45.5
RcHm_v2.0_Chr2g0099281 Rosa chinensis HOM05D006469 ORTHO05D008034 1.0e-64 251.1 300 46.0
Gorai.003G009100 Gossypium raimondii HOM05D006469 ORTHO05D008034 1.3e-64 250.8 309 42.7
Oeu005141.2 Olea europaea HOM05D006469 ORTHO05D008034 2.3e-64 250.0 306 46.7
Sp7g33770 Schrenkiella parvula HOM05D006469 ORTHO05D008034 2.3e-64 250.0 308 42.2
Atru.chr3.815 Acer truncatum HOM05D006469 ORTHO05D008034 6.6e-64 248.4 312 44.9
Phvul.003G263600 Phaseolus vulgaris HOM05D006469 ORTHO05D008034 8.6e-64 248.1 302 44.4
TPR.G24083 Trifolium pratense HOM05D006469 ORTHO05D008034 1.1e-63 247.7 311 42.4
Potri.007G057000 Populus trichocarpa HOM05D006469 ORTHO05D008034 4.3e-63 245.7 300 42.7
Thhalv10025786m.g Eutrema salsugineum HOM05D006469 ORTHO05D008034 5.6e-63 245.4 297 44.1
Lj4g0017154 Lotus japonicus HOM05D006469 ORTHO05D008034 7.3e-63 245.0 303 42.2
Lalb_Chr05g0229831 Lupinus albus HOM05D006469 ORTHO05D008034 7.3e-63 245.0 303 44.2
AT4G35987 Arabidopsis thaliana HOM05D006469 ORTHO05D008034 1.6e-62 243.8 299 42.1
Aa31LG6G12960 Aethionema arabicum HOM05D006469 ORTHO05D008034 2.1e-62 243.4 301 40.9
A01p02720 Brassica napus HOM05D006469 ORTHO05D008034 2.1e-62 243.4 304 42.1
Nn6g32040 Nelumbo nucifera HOM05D006469 ORTHO05D008034 4.7e-62 242.3 310 44.5
CARHR244380 Cardamine hirsuta HOM05D006469 ORTHO05D008034 6.1e-62 241.9 299 42.5
FvH4_1g11701 Fragaria vesca HOM05D006469 ORTHO05D008034 6.1e-62 241.9 308 43.5
ECA238G1797 Erigeron canadensis HOM05D006469 ORTHO05D008034 2.3e-61 240.0 324 40.7
PSO170G4882 Papaver somniferum HOM05D006469 ORTHO05D008034 3.1e-61 239.6 304 43.4
Haze_03751 Corylus avellana HOM05D006469 ORTHO05D008034 4.0e-61 239.2 309 43.0
arahy.Tifrunner.gnm1.ann1.DLPQ3A Arachis hypogaea HOM05D006469 ORTHO05D008034 3.4e-60 236.1 304 43.4
arahy.Tifrunner.gnm1.ann1.S7P5W6 Arachis hypogaea HOM05D006469 ORTHO05D008034 5.8e-60 235.3 304 43.4
Psat4g100640 Pisum sativum HOM05D006469 ORTHO05D008034 5.8e-60 235.3 303 42.6
Duzib147G1015 Durio zibethinus HOM05D006469 ORTHO05D008034 7.5e-60 235.0 247 47.8
BraA01t00258Z Brassica rapa HOM05D006469 ORTHO05D008034 1.7e-59 233.8 305 41.0
CANSAT25G3476 Cannabis sativa HOM05D006469 ORTHO05D008034 2.9e-59 233.0 317 42.9
Nitab4.5_0008011g0040 Nicotiana tabacum HOM05D006469 ORTHO05D008034 8.3e-59 231.5 338 39.6
BcaNung00773 Brassica carinata HOM05D006469 ORTHO05D008034 1.1e-58 231.1 305 41.0
Glyma.02G047300 Glycine max HOM05D006469 ORTHO05D008034 1.9e-58 230.3 302 43.4
PGR102G1692 Punica granatum HOM05D006469 ORTHO05D008034 1.9e-58 230.3 311 42.1
AUR62029479 Chenopodium quinoa HOM05D006469 ORTHO05D008034 2.4e-58 229.9 312 41.7
C01p03020 Brassica napus HOM05D006469 ORTHO05D008034 3.2e-58 229.6 301 41.9
Nitab4.5_0000864g0140 Nicotiana tabacum HOM05D006469 ORTHO05D008034 7.0e-58 228.4 312 41.3
Eucgr.I02338 Eucalyptus grandis HOM05D006469 ORTHO05D008034 9.2e-58 228.0 310 42.3
BolC1t00288H Brassica oleracea HOM05D006469 ORTHO05D008034 1.6e-57 227.3 301 41.2
Medtr8g075480 Medicago truncatula HOM05D006469 ORTHO05D008034 1.6e-57 227.3 309 40.1
Nitab4.5_0003548g0050 Nicotiana tabacum HOM05D006469 ORTHO05D008034 1.6e-57 227.3 253 46.6
TWI73G0981 Tripterygium wilfordii HOM05D006469 ORTHO05D008034 2.0e-57 226.9 295 39.3
Hma1.2p1_0258F.1_g104050 Hydrangea macrophylla HOM05D006469 ORTHO05D008034 4.6e-57 225.7 232 48.7
SGA_v2.0_scaffold45G17085 Striga asiatica HOM05D006469 ORTHO05D008034 1.3e-56 224.2 399 34.8
EL10Ac6g15486 Beta vulgaris HOM05D006469 ORTHO05D008034 5.0e-56 222.2 305 42.0
PSO700G0153 Papaver somniferum HOM05D006469 ORTHO05D008034 5.0e-56 222.2 273 42.9
FAN19G1692 Fragaria x ananassa HOM05D006469 ORTHO05D008034 8.6e-56 221.5 311 42.1
VMungo0251G1912 Vigna mungo HOM05D006469 ORTHO05D008034 1.5e-55 220.7 340 38.2
FAN26G2561 Fragaria x ananassa HOM05D006469 ORTHO05D008034 7.3e-55 218.4 275 42.9
Cfa006983 Carpinus fangiana HOM05D006469 ORTHO05D008034 4.7e-54 215.7 303 40.3
Aqoxy5G01802 Aquilegia oxysepala HOM05D006469 ORTHO05D008034 7.5e-52 208.4 302 39.1
Zm00001eb398850 Zea mays HOM05D006469 ORTHO05D008034 5.4e-50 202.2 322 37.9
Nitab4.5_0000438g0160 Nicotiana tabacum HOM05D006469 ORTHO05D008034 3.5e-49 199.5 151 59.6
Carub.0007s0423 Capsella rubella HOM05D006469 ORTHO05D008034 4.6e-49 199.1 299 37.8
Hma1.2p1_0258F.1_g104040 Hydrangea macrophylla HOM05D006469 ORTHO05D008034 6.0e-49 198.7 130 66.2
Actinidia22967 Actinidia chinensis HOM05D006469 ORTHO05D008034 1.7e-48 197.2 130 65.4
CANSAT25G3534 Cannabis sativa HOM05D006469 ORTHO05D008034 1.9e-47 193.7 303 41.6
QL11p035074 Quercus lobata HOM05D006469 ORTHO05D008034 1.8e-45 187.2 130 60.8
Os03g0243800 Oryza sativa ssp. japonica HOM05D006469 ORTHO05D008034 2.0e-44 183.7 314 35.4
Sed0020941 Sechium edule HOM05D006469 ORTHO05D008034 4.4e-44 182.6 207 43.0
AUR62003357 Chenopodium quinoa HOM05D006469 ORTHO05D008034 8.3e-43 178.3 215 41.9
THA.LOC104807502 Tarenaya hassleriana HOM05D006469 ORTHO05D008034 2.7e-41 173.3 222 38.7
Peaxi162Scf00328g00828 Petunia axillaris HOM05D006469 ORTHO05D008034 6.0e-41 172.2 351 32.8
Cpa.g.sc6.264 Carica papaya HOM05D006469 ORTHO05D008034 2.3e-40 170.2 111 65.8
MBI05_g33508_MAGBIO Magnolia biondii HOM05D006469 ORTHO05D008034 3.0e-40 169.9 216 40.7
Ca_22385_v3 Cicer arietinum L. HOM05D006469 ORTHO05D008034 4.7e-38 162.5 132 53.8
Hund14051 Selenicereus undatus HOM05D006469 ORTHO05D008034 1.1e-37 161.4 382 30.6
ClCG01G020380 Citrullus lanatus HOM05D000348 ORTHO05D000244 4.4e-36 156.0 323 31.6
Pp3c16_25190 Physcomitrium patens HOM05D006469 ORTHO05D008034 1.3e-35 154.5 309 31.1
Actinidia17434 Actinidia chinensis HOM05D006469 ORTHO05D008034 2.9e-35 153.3 234 40.2
Manes.01G147000 Manihot esculenta HOM05D006469 ORTHO05D008034 4.9e-35 152.5 242 40.5
Mapoly0087s0053 Marchantia polymorpha HOM05D006469 ORTHO05D008034 2.1e-33 147.1 319 30.4
TAR376G1090 Trochodendron aralioides HOM05D006469 ORTHO05D008034 4.6e-33 146.0 96 64.6
SEGI_12964 Sequoiadendron giganteum HOM05D006469 ORTHO05D008034 9.6e-31 138.3 129 46.5
Sabra07G0048900 Salix brachista HOM05D006469 ORTHO05D008034 8.4e-27 125.2 228 33.8
Sabra07G0049000 Salix brachista HOM05D006469 ORTHO05D008034 6.0e-25 119.0 90 57.8
SMO361G0665 Selaginella moellendorffii HOM05D006469 ORTHO05D008034 2.3e-24 117.1 131 39.7
Cpa.g.sc6.265 Carica papaya HOM05D006469 ORTHO05D008034 1.5e-23 114.4 114 53.5
CDE02G4028 Ceratophyllum demersum HOM05D006469 ORTHO05D008034 1.1e-21 108.2 97 53.6
CDE02G4243 Ceratophyllum demersum HOM05D006469 ORTHO05D008034 4.0e-21 106.3 209 33.0
MD15G1244100 Malus domestica HOM05D006469 ORTHO05D008034 6.9e-21 105.5 86 57.0
Prupe.7G169600 Prunus persica HOM05D006469 ORTHO05D008034 1.2e-20 104.8 115 49.6
unitig_46.g18721 Utricularia gibba HOM05D006469 ORTHO05D008034 2.7e-17 93.6 204 29.9
FAN23G0491 Fragaria x ananassa HOM05D000153 ORTHO05D000118 2.5e-15 87.0 256 27.3
ATR0810G135 Amborella trichopoda HOM05D006469 ORTHO05D008034 4.0e-13 79.7 129 40.3
C09p44210 Brassica napus HOM05D006469 ORTHO05D008034 8.4e-11 72.0 241 25.7
Ah.03g148920 Amaranthus hybridus HOM05D006469 ORTHO05D008034 1.4e-10 71.2 114 43.0
COL.COLO4_22441 Corchorus olitorius HOM05D006469 ORTHO05D008034 6.0e-09 65.9 85 45.9
BcaC04g20386 Brassica carinata HOM05D006469 ORTHO05D008034 1.3e-08 64.7 194 27.8
BcaC04g20390 Brassica carinata HOM05D006469 ORTHO05D008034 1.3e-08 64.7 194 27.8
BcaC03g14989 Brassica carinata HOM05D006469 ORTHO05D008034 3.9e-08 63.2 114 37.7
Nitab4.5_0000438g0170 Nicotiana tabacum HOM05D006469 ORTHO05D008034 6.7e-08 62.4 82 45.1


User provided reference genes

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