Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021497 Daucus carota HOM05D002848 ORTHO05D178492 0.0e+00 1483.4 759 100.0
CSS0044135 Camellia sinensis var. sinensis HOM05D002848 ORTHO05D003043 1.5e-14 85.9 243 32.5
Glyma.02G049600 Glycine max HOM05D002848 ORTHO05D003043 2.8e-13 81.6 254 29.5
Nn6g32298 Nelumbo nucifera HOM05D002848 ORTHO05D003043 2.8e-13 81.6 200 33.0
Manes.02G102900 Manihot esculenta HOM05D002848 ORTHO05D003043 6.2e-13 80.5 200 34.0
QL06p033603 Quercus lobata HOM05D002848 ORTHO05D003043 6.2e-13 80.5 217 32.3
Medtr8g076080 Medicago truncatula HOM05D002848 ORTHO05D003043 1.4e-12 79.3 215 31.2
GSVIVG01018802001 Vitis vinifera HOM05D002848 ORTHO05D003043 2.3e-12 78.6 244 32.0
Sabra05G0095000 Salix brachista HOM05D002848 ORTHO05D003043 6.8e-12 77.0 195 34.4
Haze_03792 Corylus avellana HOM05D002848 ORTHO05D003043 8.9e-12 76.6 245 27.3
Hma1.2p1_0337F.1_g129100 Hydrangea macrophylla HOM05D002848 ORTHO05D003043 8.9e-12 76.6 254 30.7
Lj4C217G5 Lonicera japonica HOM05D002848 ORTHO05D003043 8.9e-12 76.6 250 33.6
MSTRG.1211 Avicennia marina HOM05D002848 ORTHO05D003043 1.5e-11 75.9 204 30.4
Prupe.7G166800 Prunus persica HOM05D002848 ORTHO05D003043 2.0e-11 75.5 271 31.4
Duzib147G0092 Durio zibethinus HOM05D002848 ORTHO05D003043 2.6e-11 75.1 225 28.9
FAN26G0229 Fragaria x ananassa HOM05D002848 ORTHO05D003043 2.6e-11 75.1 233 30.9
Nn5g29271 Nelumbo nucifera HOM05D002848 ORTHO05D003043 4.4e-11 74.3 139 33.1
Thecc.01G021000 Theobroma cacao HOM05D002848 ORTHO05D003043 4.4e-11 74.3 320 28.4
TAR625G0420 Trochodendron aralioides HOM05D002848 ORTHO05D003043 4.4e-11 74.3 204 30.4
Lj2g0018127 Lotus japonicus HOM05D002848 ORTHO05D003043 5.8e-11 73.9 260 30.4
Gohir.A11G176500 Gossypium hirsutum HOM05D002848 ORTHO05D003043 9.9e-11 73.2 261 28.0
Actinidia22990 Actinidia chinensis HOM05D002848 ORTHO05D003043 1.3e-10 72.8 292 28.1
FAN28G1861 Fragaria x ananassa HOM05D002848 ORTHO05D003043 1.3e-10 72.8 246 30.1
Actinidia15403 Actinidia chinensis HOM05D002848 ORTHO05D003043 1.7e-10 72.4 197 29.9
FvH4_1g11990 Fragaria vesca HOM05D002848 ORTHO05D003043 1.7e-10 72.4 249 30.1
FAN19G0904 Fragaria x ananassa HOM05D002848 ORTHO05D003043 1.7e-10 72.4 249 30.1
Glyma.02G049700 Glycine max HOM05D002848 ORTHO05D003043 1.7e-10 72.4 248 28.6
MD02G1134000 Malus domestica HOM05D002848 ORTHO05D003043 2.2e-10 72.0 268 29.5
SalBow7G4492 Salvia bowleyana HOM05D002848 ORTHO05D003043 2.2e-10 72.0 212 32.5
CSS0049415 Camellia sinensis var. sinensis HOM05D002848 ORTHO05D003043 2.9e-10 71.6 197 31.0
Gohir.D11G184300 Gossypium hirsutum HOM05D002848 ORTHO05D003043 2.9e-10 71.6 261 27.6
Gorai.007G196000 Gossypium raimondii HOM05D002848 ORTHO05D003043 2.9e-10 71.6 261 27.6
Sc02g0008430 Simmondsia chinensis HOM05D002848 ORTHO05D003043 4.9e-10 70.9 212 30.2
TAR381G0737 Trochodendron aralioides HOM05D002848 ORTHO05D003043 4.9e-10 70.9 202 30.2
CiPaw.08G132900 Carya illinoinensis HOM05D002848 ORTHO05D003043 6.4e-10 70.5 245 26.5
Oeu046254.1 Olea europaea HOM05D002848 ORTHO05D003043 6.4e-10 70.5 147 31.3
Sed0026959 Sechium edule HOM05D002848 ORTHO05D003043 6.4e-10 70.5 272 27.9
THA.LOC104819181 Tarenaya hassleriana HOM05D002848 ORTHO05D003043 6.4e-10 70.5 192 31.8
Aqoxy6G02321 Aquilegia oxysepala HOM05D002848 ORTHO05D003043 8.4e-10 70.1 221 31.2
MSTRG.2700 Avicennia marina HOM05D002848 ORTHO05D003043 8.4e-10 70.1 215 30.2
CsaV3_2G029390 Cucumis sativus L. HOM05D002848 ORTHO05D003043 8.4e-10 70.1 272 27.9
Sabra07G0010500 Salix brachista HOM05D002848 ORTHO05D003043 8.4e-10 70.1 213 29.1
PSO541G4561 Papaver somniferum HOM05D002848 ORTHO05D003043 1.1e-09 69.7 223 30.9
Potri.005G236300 Populus trichocarpa HOM05D002848 ORTHO05D003043 1.1e-09 69.7 215 30.7
ClCG08G014420 Citrullus lanatus HOM05D004047 ORTHO05D004772 1.4e-09 69.3 267 29.6
Dinv33617 Davidia involucrata HOM05D002848 ORTHO05D003043 1.4e-09 69.3 207 31.9
Dinv40073 Davidia involucrata HOM05D002848 ORTHO05D003043 1.4e-09 69.3 54 53.7
SalBow3G4187 Salvia bowleyana HOM05D002848 ORTHO05D003043 1.4e-09 69.3 192 31.8
Prupe.1G368900 Prunus persica HOM05D002848 ORTHO05D003043 1.9e-09 68.9 263 28.5
Psat4g098440 Pisum sativum HOM05D002848 ORTHO05D003043 3.2e-09 68.2 238 28.2
Potri.005G116001 Populus trichocarpa HOM05D002848 ORTHO05D003043 3.2e-09 68.2 98 41.8
PGSC0003DMG400029424 Solanum tuberosum HOM05D002848 ORTHO05D003043 3.2e-09 68.2 265 30.6
DCAR_016617 Daucus carota HOM05D002848 ORTHO05D178534 4.1e-09 67.8 94 44.7
Cfa006959 Carpinus fangiana HOM05D002848 ORTHO05D003043 5.4e-09 67.4 245 27.3
Duzib041G0763 Durio zibethinus HOM05D002848 ORTHO05D003043 7.1e-09 67.0 225 27.6
Thecc.08G040800 Theobroma cacao HOM05D002848 ORTHO05D003043 7.1e-09 67.0 213 29.6
Dinv39498 Davidia involucrata HOM05D002848 ORTHO05D003043 9.2e-09 66.6 241 29.9
TWI53G0820 Tripterygium wilfordii HOM05D002848 ORTHO05D003043 9.2e-09 66.6 239 28.9
CAN.G847.13 Capsicum annuum HOM05D002848 ORTHO05D003043 1.2e-08 66.2 330 25.5
Dinv31824 Davidia involucrata HOM05D002848 ORTHO05D003043 1.2e-08 66.2 198 29.8
Sabra05G0182700 Salix brachista HOM05D002848 ORTHO05D003043 1.2e-08 66.2 224 30.4
EL10As8g23840 Beta vulgaris HOM05D002848 ORTHO05D003043 1.6e-08 65.9 222 31.5
Gohir.A01G112600 Gossypium hirsutum HOM05D002848 ORTHO05D003043 1.6e-08 65.9 191 32.5
arahy.Tifrunner.gnm1.ann1.0H5DHB Arachis hypogaea HOM05D002848 ORTHO05D003043 2.1e-08 65.5 58 51.7
arahy.Tifrunner.gnm1.ann1.9DZU8H Arachis hypogaea HOM05D002848 ORTHO05D003043 2.1e-08 65.5 58 51.7
Carub.0005s1757 Capsella rubella HOM05D002848 ORTHO05D003043 2.1e-08 65.5 205 29.8
Ca_19632_v3 Cicer arietinum L. HOM05D002848 ORTHO05D003043 2.7e-08 65.1 258 28.7
Lalb_Chr09g0321841 Lupinus albus HOM05D002848 ORTHO05D003043 2.7e-08 65.1 289 27.0
Sopen12g031140 Solanum pennellii HOM05D002848 ORTHO05D003043 2.7e-08 65.1 266 28.6
Atru.chr13.328 Acer truncatum HOM05D002848 ORTHO05D003043 3.5e-08 64.7 218 28.9
Eucgr.F01630 Eucalyptus grandis HOM05D002848 ORTHO05D003043 3.5e-08 64.7 198 32.3
PSO675G8906 Papaver somniferum HOM05D002848 ORTHO05D003043 3.5e-08 64.7 271 31.0
RcHm_v2.0_Chr2g0099611 Rosa chinensis HOM05D002848 ORTHO05D003043 3.5e-08 64.7 259 28.2
MD08G1015700 Malus domestica HOM05D002848 ORTHO05D003043 6.0e-08 63.9 264 26.5
COL.COLO4_21931 Corchorus olitorius HOM05D002848 ORTHO05D003043 7.8e-08 63.5 51 54.9
Oeu048454.1 Olea europaea HOM05D002848 ORTHO05D003043 7.8e-08 63.5 233 31.3
Hund24098 Selenicereus undatus HOM05D002848 ORTHO05D003043 7.8e-08 63.5 171 28.1
TPR.G30055 Trifolium pratense HOM05D002848 ORTHO05D003043 7.8e-08 63.5 204 30.4
AL5G31600 Arabidopsis lyrata HOM05D002848 ORTHO05D003043 1.0e-07 63.2 194 29.4
ClCG01G020170 Citrullus lanatus HOM05D002848 ORTHO05D003043 1.0e-07 63.2 227 30.8
Duzib187G1527 Durio zibethinus HOM05D002848 ORTHO05D003043 1.0e-07 63.2 193 29.5
Sed0014337 Sechium edule HOM05D002848 ORTHO05D003043 1.0e-07 63.2 226 28.8
Solyc12g089260.3 Solanum lycopersicum HOM05D002848 ORTHO05D003043 1.0e-07 63.2 265 28.3
Ca_13279_v3 Cicer arietinum L. HOM05D002848 ORTHO05D003043 1.3e-07 62.8 124 32.3
VMungo0251G2011 Vigna mungo HOM05D002848 ORTHO05D003043 1.3e-07 62.8 278 29.5
Migut.C00819 Erythranthe guttata HOM05D002848 ORTHO05D003043 1.7e-07 62.4 137 31.4
Gohir.D01G099400 Gossypium hirsutum HOM05D002848 ORTHO05D003043 1.7e-07 62.4 190 32.1
Gorai.002G124700 Gossypium raimondii HOM05D002848 ORTHO05D003043 1.7e-07 62.4 211 30.3
Actinidia16964 Actinidia chinensis HOM05D002848 ORTHO05D003043 2.3e-07 62.0 131 33.6
DCAR_013853 Daucus carota HOM05D002848 ORTHO05D003043 2.3e-07 62.0 50 52.0
Peaxi162Scf00064g00626 Petunia axillaris HOM05D002848 ORTHO05D003043 2.3e-07 62.0 98 34.7
Cfa013922 Carpinus fangiana HOM05D002848 ORTHO05D003043 3.0e-07 61.6 252 29.8
Nitab4.5_0005721g0090 Nicotiana tabacum HOM05D002848 ORTHO05D003043 3.0e-07 61.6 89 37.1
PGR083G2521 Punica granatum HOM05D002848 ORTHO05D003043 3.0e-07 61.6 50 52.0
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 3.0e-07 61.6 108 34.3
unitig_578.g16090 Utricularia gibba HOM05D002848 ORTHO05D003043 3.0e-07 61.6 113 32.7
CDE08G1142 Ceratophyllum demersum HOM05D002848 ORTHO05D003043 3.9e-07 61.2 55 49.1
Glyma.01G167400 Glycine max HOM05D002848 ORTHO05D003043 8.6e-07 60.1 93 38.7
Phvul.009G015300 Phaseolus vulgaris HOM05D002848 ORTHO05D003043 8.6e-07 60.1 67 41.8
VMungo1309G0824 Vigna mungo HOM05D002848 ORTHO05D003043 8.6e-07 60.1 67 41.8
Ah.11g039460 Amaranthus hybridus HOM05D002848 ORTHO05D003043 1.1e-06 59.7 208 28.8
CANSAT25G2982 Cannabis sativa HOM05D002848 ORTHO05D003043 1.1e-06 59.7 256 30.5
Oeu007349.2 Olea europaea HOM05D002848 ORTHO05D003043 1.1e-06 59.7 126 30.2
vmacro21710 Vaccinium macrocarpon HOM05D002848 ORTHO05D003043 1.1e-06 59.7 133 33.1
Zm00001eb067340 Zea mays HOM05D002848 ORTHO05D003043 1.1e-06 59.7 218 27.1
Duzib116G0954 Durio zibethinus HOM05D002848 ORTHO05D003043 1.5e-06 59.3 224 25.9
Lalb_Chr23g0266241 Lupinus albus HOM05D002848 ORTHO05D003043 1.5e-06 59.3 67 40.3
Nitab4.5_0000192g0040 Nicotiana tabacum HOM05D002848 ORTHO05D003043 1.5e-06 59.3 244 27.0
Nitab4.5_0000577g0100 Nicotiana tabacum HOM05D002848 ORTHO05D003043 1.5e-06 59.3 198 29.8
SGA_v2.0_scaffold92G28266 Striga asiatica HOM05D002848 ORTHO05D003043 1.5e-06 59.3 202 28.2
CiPaw.08G064200 Carya illinoinensis HOM05D002848 ORTHO05D003043 1.9e-06 58.9 81 39.5
Lsat_1_v5_gn_8_31441 Lactuca sativa HOM05D002848 ORTHO05D003043 1.9e-06 58.9 84 38.1
MD15G1247000 Malus domestica HOM05D002848 ORTHO05D003043 1.9e-06 58.9 261 27.6
Potri.002G025100 Populus trichocarpa HOM05D002848 ORTHO05D003043 1.9e-06 58.9 108 33.3
GSVIVG01009860001 Vitis vinifera HOM05D002848 ORTHO05D003043 1.9e-06 58.9 86 41.9
CiPaw.09G133400 Carya illinoinensis HOM05D002848 ORTHO05D003043 2.5e-06 58.5 195 29.7
Haze_22606 Corylus avellana HOM05D002848 ORTHO05D003043 2.5e-06 58.5 241 29.0
Glyma.04G025900 Glycine max HOM05D002848 ORTHO05D003043 2.5e-06 58.5 47 51.1
AUR62035722 Chenopodium quinoa HOM05D002848 ORTHO05D003043 3.3e-06 58.2 216 28.7
Migut.N03144 Erythranthe guttata HOM05D002848 ORTHO05D003043 3.3e-06 58.2 91 46.2
FvH4_2g38810 Fragaria vesca HOM05D002848 ORTHO05D003043 3.3e-06 58.2 224 26.3
Sed0009314 Sechium edule HOM05D002848 ORTHO05D003043 3.3e-06 58.2 54 51.9
Cpa.g.sc26.22 Carica papaya HOM05D000113 ORTHO05D003010 4.3e-06 57.8 244 27.0
MD15G1014600 Malus domestica HOM05D002848 ORTHO05D003043 4.3e-06 57.8 165 28.5
Rhsim06G0023800 Rhododendron simsii HOM05D002848 ORTHO05D003043 4.3e-06 57.8 51 56.9
TPR.G3788 Trifolium pratense HOM05D002848 ORTHO05D003043 4.3e-06 57.8 195 25.1
AT3G51180 Arabidopsis thaliana HOM05D002848 ORTHO05D003043 5.6e-06 57.4 241 28.2
CAN.G1671.1 Capsicum annuum HOM05D002848 ORTHO05D003043 5.6e-06 57.4 110 33.6
FAN20G0280 Fragaria x ananassa HOM05D004047 ORTHO05D004772 5.6e-06 57.4 189 27.5
Lj1g0005660 Lotus japonicus HOM05D002848 ORTHO05D003043 5.6e-06 57.4 86 38.4
Sp5g11040 Schrenkiella parvula HOM05D002848 ORTHO05D003043 5.6e-06 57.4 189 28.0
EL10Ac1g02255 Beta vulgaris HOM05D002848 ORTHO05D003043 7.3e-06 57.0 50 46.0
Aa31LG4G19250 Aethionema arabicum HOM05D002848 ORTHO05D003043 9.6e-06 56.6 267 27.0
Cc07_g10600 Coffea canephora HOM05D002848 ORTHO05D003043 9.6e-06 56.6 196 30.6
HanXRQChr12g0367651 Helianthus annuus HOM05D002848 ORTHO05D003043 9.6e-06 56.6 271 26.9
Manes.18G015900 Manihot esculenta HOM05D002848 ORTHO05D003043 9.6e-06 56.6 47 48.9


User provided reference genes

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