Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021493 Daucus carota HOM05D005603 ORTHO05D006944 3.6e-246 854.4 404 100.0
QL06p033966 Quercus lobata HOM05D005603 ORTHO05D006944 1.2e-217 759.6 402 88.3
Prupe.7G165200 Prunus persica HOM05D005603 ORTHO05D006944 7.9e-217 756.9 404 88.4
Aqoxy5G01490 Aquilegia oxysepala HOM05D005603 ORTHO05D006944 1.0e-216 756.5 402 88.6
TAR628G0819 Trochodendron aralioides HOM05D005603 ORTHO05D006944 2.1e-214 748.8 403 86.8
Manes.02G101300 Manihot esculenta HOM05D005603 ORTHO05D006944 4.8e-214 747.7 399 89.0
Nn5g29214 Nelumbo nucifera HOM05D005603 ORTHO05D006944 8.2e-214 746.9 404 86.9
FvH4_1g12160 Fragaria vesca HOM05D005603 ORTHO05D006944 1.4e-213 746.1 404 86.6
MSTRG.15764 Avicennia marina HOM05D005603 ORTHO05D006944 1.8e-213 745.7 399 86.7
Eucgr.I02369 Eucalyptus grandis HOM05D005603 ORTHO05D006944 1.8e-213 745.7 404 86.6
MD15G1249000 Malus domestica HOM05D005603 ORTHO05D006944 1.8e-213 745.7 403 87.3
CiPaw.07G056000 Carya illinoinensis HOM05D005603 ORTHO05D006944 2.4e-213 745.3 405 87.4
CSS0040106 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 3.1e-213 745.0 405 87.9
Sc03g0003440 Simmondsia chinensis HOM05D005603 ORTHO05D006944 3.1e-213 745.0 404 85.1
HanXRQChr16g0531111 Helianthus annuus HOM05D005603 ORTHO05D006944 5.3e-213 744.2 403 86.6
CANSAT01G2298 Cannabis sativa HOM05D005603 ORTHO05D006944 1.5e-212 742.7 401 87.0
COL.COLO4_21962 Corchorus olitorius HOM05D005603 ORTHO05D006944 5.9e-212 740.7 404 87.4
TPR.G2333 Trifolium pratense HOM05D005603 ORTHO05D006944 1.0e-211 740.0 406 86.5
Gohir.A02G169100 Gossypium hirsutum HOM05D005603 ORTHO05D006944 1.3e-211 739.6 404 86.9
TAR376G0194 Trochodendron aralioides HOM05D005603 ORTHO05D006944 1.3e-211 739.6 404 86.4
Glyma.01G168600 Glycine max HOM05D005603 ORTHO05D006944 1.7e-211 739.2 406 86.7
TWI09G0997 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 1.7e-211 739.2 403 86.8
Gohir.D03G010900 Gossypium hirsutum HOM05D005603 ORTHO05D006944 2.2e-211 738.8 404 86.6
Gorai.003G011300 Gossypium raimondii HOM05D005603 ORTHO05D006944 2.2e-211 738.8 404 86.6
GSVIVG01018824001 Vitis vinifera HOM05D005603 ORTHO05D006944 2.9e-211 738.4 390 89.2
Ca_24898_v3 Cicer arietinum L. HOM05D005603 ORTHO05D006944 1.1e-210 736.5 406 86.2
SGA_v2.0_scaffold47G17673 Striga asiatica HOM05D005603 ORTHO05D006944 1.4e-210 736.1 406 85.0
AUR62007651 Chenopodium quinoa HOM05D005603 ORTHO05D006944 1.9e-210 735.7 398 84.9
Hma1.2p1_0743F.1_g211450 Hydrangea macrophylla HOM05D005603 ORTHO05D006944 1.9e-210 735.7 416 86.1
Glyma.11G074800 Glycine max HOM05D005603 ORTHO05D006944 2.5e-210 735.3 406 86.2
Potri.005G117200 Populus trichocarpa HOM05D005603 ORTHO05D006944 3.2e-210 734.9 402 87.3
RcHm_v2.0_Chr2g0099911 Rosa chinensis HOM05D005603 ORTHO05D006944 3.2e-210 734.9 404 85.9
Medtr5g021520 Medicago truncatula HOM05D005603 ORTHO05D006944 4.2e-210 734.6 407 86.2
ClCG01G020120 Citrullus lanatus HOM05D005603 ORTHO05D006944 9.3e-210 733.4 399 86.0
Migut.L00039 Erythranthe guttata HOM05D005603 ORTHO05D006944 9.3e-210 733.4 400 85.5
Phvul.002G111500 Phaseolus vulgaris HOM05D005603 ORTHO05D006944 1.2e-209 733.0 406 85.7
Thecc.01G023100 Theobroma cacao HOM05D005603 ORTHO05D006944 1.6e-209 732.6 404 86.6
CDE05G2538 Ceratophyllum demersum HOM05D005603 ORTHO05D006944 2.7e-209 731.9 399 85.7
ECA246G4842 Erigeron canadensis HOM05D005603 ORTHO05D006944 3.6e-209 731.5 390 86.9
VMungo1215G2039 Vigna mungo HOM05D005603 ORTHO05D006944 3.6e-209 731.5 405 85.7
Nitab4.5_0008176g0030 Nicotiana tabacum HOM05D005603 ORTHO05D006944 7.9e-209 730.3 419 82.8
Psat2g155920 Pisum sativum HOM05D005603 ORTHO05D006944 7.9e-209 730.3 406 86.0
MELO3C007885.2 Cucumis melo HOM05D005603 ORTHO05D006944 1.3e-208 729.6 403 84.4
CsaV3_6G046890 Cucumis sativus L. HOM05D005603 ORTHO05D006944 1.3e-208 729.6 403 84.6
ATR0620G128 Amborella trichopoda HOM05D005603 ORTHO05D006944 3.0e-208 728.4 404 84.4
MD02G1111100 Malus domestica HOM05D005603 ORTHO05D006944 3.0e-208 728.4 403 85.4
Sopen02g029190 Solanum pennellii HOM05D005603 ORTHO05D006944 6.7e-208 727.2 404 85.1
Cc07_g10420 Coffea canephora HOM05D005603 ORTHO05D006944 1.9e-207 725.7 391 87.5
arahy.Tifrunner.gnm1.ann1.V913IW Arachis hypogaea HOM05D005603 ORTHO05D006944 4.3e-207 724.5 406 85.2
Lsat_1_v5_gn_3_73720 Lactuca sativa HOM05D005603 ORTHO05D006944 4.3e-207 724.5 398 85.4
PSO541G2355 Papaver somniferum HOM05D005603 ORTHO05D006944 5.7e-207 724.2 404 84.2
PSO675G2068 Papaver somniferum HOM05D005603 ORTHO05D006944 5.7e-207 724.2 404 84.2
Sed0002868 Sechium edule HOM05D005603 ORTHO05D006944 1.6e-206 722.6 404 85.1
EL10As8g23850 Beta vulgaris HOM05D005603 ORTHO05D006944 2.8e-206 721.8 396 84.3
Hund14030 Selenicereus undatus HOM05D005603 ORTHO05D006944 2.8e-206 721.8 402 82.8
Potri.007G015800 Populus trichocarpa HOM05D005603 ORTHO05D006944 4.8e-206 721.1 403 85.4
SalBow8G5567 Salvia bowleyana HOM05D005603 ORTHO05D006944 8.2e-206 720.3 410 83.9
Lj2g0023828 Lotus japonicus HOM05D005603 ORTHO05D006944 1.1e-205 719.9 411 84.2
THA.LOC104819186 Tarenaya hassleriana HOM05D005603 ORTHO05D006944 2.4e-205 718.8 403 83.4
Ciclev10025760m.g Citrus clementina HOM05D005603 ORTHO05D006944 1.5e-204 716.1 402 83.3
Os06g0714000 Oryza sativa ssp. japonica HOM05D005603 ORTHO05D006944 3.4e-204 714.9 401 83.3
Oeu035330.1 Olea europaea HOM05D005603 ORTHO05D006944 1.3e-203 713.0 400 83.2
AT3G51130 Arabidopsis thaliana HOM05D005603 ORTHO05D006944 1.7e-203 712.6 404 81.2
Duzib147G0771 Durio zibethinus HOM05D005603 ORTHO05D006944 1.7e-203 712.6 390 85.9
Hund16476 Selenicereus undatus HOM05D005603 ORTHO05D006944 2.9e-203 711.8 433 78.1
Carub.0005s1753 Capsella rubella HOM05D005603 ORTHO05D006944 6.5e-203 710.7 404 80.0
arahy.Tifrunner.gnm1.ann1.8YZ064 Arachis hypogaea HOM05D005603 ORTHO05D006944 1.1e-202 709.9 435 79.5
AL5G31550 Arabidopsis lyrata HOM05D005603 ORTHO05D006944 1.9e-202 709.1 404 80.7
Aa31LG4G19220 Aethionema arabicum HOM05D005603 ORTHO05D006944 4.2e-202 708.0 404 81.4
Thhalv10010418m.g Eutrema salsugineum HOM05D005603 ORTHO05D006944 5.5e-202 707.6 406 79.8
Nitab4.5_0000912g0020 Nicotiana tabacum HOM05D005603 ORTHO05D006944 7.2e-202 707.2 411 82.2
Peaxi162Scf00083g01233 Petunia axillaris HOM05D005603 ORTHO05D006944 7.2e-202 707.2 396 84.3
PGSC0003DMG400003547 Solanum tuberosum HOM05D005603 ORTHO05D006944 4.6e-201 704.5 390 84.9
FAN28G0526 Fragaria x ananassa HOM05D005603 ORTHO05D006944 5.1e-200 701.0 404 82.7
Haze_03808 Corylus avellana HOM05D005603 ORTHO05D006944 6.7e-200 700.7 402 83.3
CAN.G358.2 Capsicum annuum HOM05D005603 ORTHO05D006944 8.8e-200 700.3 391 83.4
BcaC06g33053 Brassica carinata HOM05D005603 ORTHO05D006944 4.4e-199 698.0 399 81.0
Rhsim08G0035200 Rhododendron simsii HOM05D005603 ORTHO05D006944 4.4e-199 698.0 416 80.8
Sed0017160 Sechium edule HOM05D005603 ORTHO05D006944 1.4e-197 693.0 404 81.7
Sp5g11080 Schrenkiella parvula HOM05D005603 ORTHO05D006944 1.8e-197 692.6 404 79.2
CSS0042462 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 3.1e-197 691.8 403 82.1
HPP92_025419 Vanilla planifolia HOM05D005603 ORTHO05D006944 1.2e-196 689.9 400 80.5
CSS0001882 Camellia sinensis var. sinensis HOM05D005603 ORTHO05D006944 3.4e-196 688.3 403 81.6
FAN23G1635 Fragaria x ananassa HOM05D005603 ORTHO05D006944 5.9e-196 687.6 398 81.9
A03p48150 Brassica napus HOM05D005603 ORTHO05D006944 5.0e-195 684.5 383 81.5
BraA03t13922Z Brassica rapa HOM05D005603 ORTHO05D006944 5.0e-195 684.5 383 81.5
Cpa.g.sc6.214 Carica papaya HOM05D005603 ORTHO05D006944 1.9e-194 682.6 421 79.3
CARHR160730 Cardamine hirsuta HOM05D005603 ORTHO05D006944 4.2e-194 681.4 404 77.2
BolC7t45134H Brassica oleracea HOM05D005603 ORTHO05D006944 7.9e-193 677.2 385 81.0
MSTRG.3829 Avicennia marina HOM05D005603 ORTHO05D006944 5.2e-192 674.5 399 80.2
FAN19G0288 Fragaria x ananassa HOM05D005603 ORTHO05D006944 4.4e-191 671.4 388 82.2
unitig_32.g11821 Utricularia gibba HOM05D005603 ORTHO05D006944 1.4e-189 666.4 382 81.7
TWI53G1238 Tripterygium wilfordii HOM05D005603 ORTHO05D006944 1.6e-188 662.9 367 85.0
C07p46180 Brassica napus HOM05D005603 ORTHO05D006944 3.5e-188 661.8 406 76.6
FAN26G2705 Fragaria x ananassa HOM05D005603 ORTHO05D006944 1.0e-187 660.2 381 82.2
Lj4C215G4 Lonicera japonica HOM05D005603 ORTHO05D006944 3.8e-187 658.3 404 79.2
Zm00001eb227930 Zea mays HOM05D005603 ORTHO05D006944 5.0e-187 657.9 401 78.1
vmacro22086 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 2.5e-186 655.6 357 84.9
Sabra05G0096200 Salix brachista HOM05D005603 ORTHO05D006944 5.2e-184 647.9 411 78.8
BraA09t39879Z Brassica rapa HOM05D005603 ORTHO05D006944 4.4e-183 644.8 384 76.6
A09p44190 Brassica napus HOM05D005603 ORTHO05D006944 9.7e-183 643.7 384 76.3
BolC8t50258H Brassica oleracea HOM05D005603 ORTHO05D006944 4.8e-182 641.3 384 76.0
BcaB01g00547 Brassica carinata HOM05D005603 ORTHO05D006944 7.0e-181 637.5 375 77.1
Duzib264G0505 Durio zibethinus HOM05D005603 ORTHO05D006944 7.0e-181 637.5 404 77.7
Sabra07G0013000 Salix brachista HOM05D005603 ORTHO05D006944 4.5e-180 634.8 403 77.7
vmacro18394 Vaccinium macrocarpon HOM05D005603 ORTHO05D006944 1.2e-177 626.7 341 85.0
C08p26410 Brassica napus HOM05D005603 ORTHO05D006944 1.1e-170 603.6 356 77.0
Lalb_Chr16g0377611 Lupinus albus HOM05D005603 ORTHO05D006944 2.8e-169 599.0 332 83.7
Pp3c2_6370 Physcomitrium patens HOM05D005603 ORTHO05D006944 3.0e-168 595.5 393 70.0
Pp3c10_8990 Physcomitrium patens HOM05D005603 ORTHO05D006944 2.0e-167 592.8 394 69.5
AagrBONN_evm.TU.Sc2ySwM_228.543 Anthoceros agrestis HOM05D005603 ORTHO05D006944 1.3e-166 590.1 398 69.8
Ah.02g124640 Amaranthus hybridus HOM05D005603 ORTHO05D006944 1.7e-166 589.7 393 72.3
SMO117G0153 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 4.5e-164 581.6 394 68.5
Dinv40059 Davidia involucrata HOM05D005603 ORTHO05D006944 1.8e-160 569.7 305 87.5
SEGI_22640 Sequoiadendron giganteum HOM05D005603 ORTHO05D006944 7.8e-156 554.3 345 75.7
Dinv33602 Davidia involucrata HOM05D005603 ORTHO05D006944 1.3e-155 553.5 306 85.6
Actinidia31012 Actinidia chinensis HOM05D005603 ORTHO05D006944 1.2e-151 540.4 306 83.7
Mapoly0152s0028 Marchantia polymorpha HOM05D005603 ORTHO05D006944 2.4e-149 532.7 400 63.8
Mapoly0094s0075 Marchantia polymorpha HOM05D005603 ORTHO05D006944 6.6e-147 524.6 393 63.4
Lalb_Chr09g0321921 Lupinus albus HOM05D005603 ORTHO05D006944 4.2e-117 425.6 242 83.5
SMO037G0002 Selaginella moellendorffii HOM05D005603 ORTHO05D006944 9.6e-106 387.9 266 66.9
Solyc02g075630.3 Solanum lycopersicum HOM05D005603 ORTHO05D006944 7.4e-98 361.7 208 82.2
Atru.chr3.766 Acer truncatum HOM05D005603 ORTHO05D006944 2.3e-91 340.1 186 83.3
Actinidia26078 Actinidia chinensis HOM05D005603 ORTHO05D006944 4.8e-89 332.4 217 78.3
Nn015s41468 Nelumbo nucifera HOM05D005603 ORTHO05D006944 5.9e-87 325.5 171 87.1
Migut.H02480 Erythranthe guttata HOM05D005603 ORTHO05D006944 8.5e-86 321.6 371 51.2
Lalb_Chr09g0321931 Lupinus albus HOM05D005603 ORTHO05D006944 8.8e-83 311.6 163 87.1
CBR_g36682 Chara braunii HOM05D005603 ORTHO05D000002 1.3e-78 297.7 224 63.8
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 7.2e-77 292.0 434 39.6
Nn015s41469 Nelumbo nucifera HOM05D005603 ORTHO05D006944 9.1e-72 275.0 146 85.6
CBR_g36680 Chara braunii HOM05D005603 ORTHO05D006944 6.8e-59 232.3 173 63.0
BcaC06g33054 Brassica carinata HOM05D005603 ORTHO05D006944 1.5e-58 231.1 144 74.3
Atru.chr2.40 Acer truncatum HOM05D005603 ORTHO05D006944 2.9e-46 190.3 190 55.3
Actinidia31013 Actinidia chinensis HOM05D005603 ORTHO05D006944 7.0e-32 142.5 72 91.7
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 2.5e-21 107.5 203 38.9
Cfa027245 Carpinus fangiana HOM05D005603 ORTHO05D006944 1.7e-14 84.7 269 27.9
COL.COLO4_32114 Corchorus olitorius HOM05D000931 ORTHO05D002226 4.6e-07 60.1 51 58.8


User provided reference genes

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