Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 3.1e-50 201.4 97 100.0
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 2.1e-30 135.6 99 66.7
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 2.1e-30 135.6 99 66.7
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 4.6e-30 134.4 99 66.7
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 6.0e-30 134.0 99 67.7
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 7.9e-30 133.7 100 69.0
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 2.3e-29 132.1 99 65.7
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 2.3e-29 132.1 97 70.1
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 3.0e-29 131.7 101 67.3
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 3.0e-29 131.7 99 65.7
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 3.0e-29 131.7 99 66.7
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 3.0e-29 131.7 100 68.0
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 3.9e-29 131.3 99 62.6
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 3.9e-29 131.3 100 67.0
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 3.9e-29 131.3 97 69.1
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 3.9e-29 131.3 97 69.1
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 3.9e-29 131.3 99 65.7
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 5.1e-29 131.0 99 64.6
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 5.1e-29 131.0 99 65.7
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 8.7e-29 130.2 100 64.0
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 8.7e-29 130.2 96 66.7
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 8.7e-29 130.2 96 66.7
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 1.1e-28 129.8 103 64.1
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.1e-28 129.8 103 64.1
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.1e-28 129.8 103 64.1
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 1.1e-28 129.8 100 68.0
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 1.5e-28 129.4 99 61.6
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 1.9e-28 129.0 99 64.6
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 1.9e-28 129.0 99 66.7
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.9e-28 129.0 103 64.1
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.9e-28 129.0 103 64.1
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 1.9e-28 129.0 100 69.0
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 1.9e-28 129.0 98 65.3
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.9e-28 129.0 99 64.6
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 2.5e-28 128.6 99 65.7
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 3.3e-28 128.3 98 65.3
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 4.3e-28 127.9 96 67.7
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 4.3e-28 127.9 102 64.7
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 4.3e-28 127.9 102 64.7
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 5.6e-28 127.5 98 65.3
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 5.6e-28 127.5 98 65.3
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 5.6e-28 127.5 97 64.9
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 7.4e-28 127.1 100 63.0
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 9.6e-28 126.7 99 63.6
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 9.6e-28 126.7 97 61.9
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 9.6e-28 126.7 98 64.3
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 1.6e-27 125.9 98 66.3
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 1.6e-27 125.9 101 62.4
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 1.6e-27 125.9 99 63.6
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 2.1e-27 125.6 103 63.1
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 2.8e-27 125.2 102 61.8
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 2.8e-27 125.2 97 67.0
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 2.8e-27 125.2 105 63.8
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 2.8e-27 125.2 101 65.3
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 2.8e-27 125.2 97 62.9
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 4.8e-27 124.4 103 65.0
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 6.2e-27 124.0 103 64.1
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 6.2e-27 124.0 100 63.0
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 8.1e-27 123.6 99 62.6
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 8.1e-27 123.6 100 62.0
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 1.1e-26 123.2 127 53.5
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 1.1e-26 123.2 99 63.6
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 1.4e-26 122.9 100 67.0
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 1.4e-26 122.9 103 60.2
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 1.8e-26 122.5 100 65.0
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 1.8e-26 122.5 99 64.6
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 1.8e-26 122.5 99 62.6
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 1.8e-26 122.5 99 61.6
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.4e-26 122.1 99 62.6
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 2.4e-26 122.1 101 65.3
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 2.4e-26 122.1 97 67.0
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 3.1e-26 121.7 103 65.0
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 3.1e-26 121.7 98 61.2
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 3.1e-26 121.7 99 61.6
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 4.0e-26 121.3 100 64.0
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 4.0e-26 121.3 100 64.0
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 4.0e-26 121.3 100 63.0
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 5.3e-26 120.9 99 62.6
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 5.3e-26 120.9 98 63.3
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 5.3e-26 120.9 96 64.6
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 6.9e-26 120.6 105 65.7
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 9.0e-26 120.2 98 63.3
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 1.2e-25 119.8 96 60.4
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 2.0e-25 119.0 95 62.1
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 2.0e-25 119.0 95 60.0
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 2.6e-25 118.6 102 63.7
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 2.6e-25 118.6 100 60.0
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 3.4e-25 118.2 96 62.5
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 4.5e-25 117.9 99 60.6
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 5.8e-25 117.5 96 62.5
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 7.6e-25 117.1 98 61.2
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 7.6e-25 117.1 99 60.6
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 9.9e-25 116.7 99 59.6
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 9.9e-25 116.7 98 61.2
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 9.9e-25 116.7 98 61.2
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 1.3e-24 116.3 97 62.9
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 2.2e-24 115.5 99 57.6
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 2.9e-24 115.2 102 58.8
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 6.4e-24 114.0 90 66.7
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 6.4e-24 114.0 97 60.8
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 1.1e-23 113.2 94 59.6
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.9e-23 112.5 86 64.0
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 1.9e-23 112.5 98 61.2
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 1.9e-23 112.5 88 62.5
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 1.9e-23 112.5 101 58.4
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 1.9e-23 112.5 101 58.4
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 7.1e-23 110.5 102 59.8
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 1.2e-22 109.8 89 62.9
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 2.1e-22 109.0 97 55.7
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 2.1e-22 109.0 90 62.2
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 2.1e-22 109.0 88 62.5
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 3.5e-22 108.2 85 64.7
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 3.5e-22 108.2 106 54.7
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.0e-21 106.7 100 56.0
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 1.3e-21 106.3 88 63.6
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 8.7e-21 103.6 90 61.1
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 3.3e-20 101.7 98 57.1
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 4.3e-20 101.3 86 58.1
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 4.3e-20 101.3 80 60.0
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 5.6e-20 100.9 88 58.0
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 5.6e-20 100.9 90 60.0
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.3e-19 99.8 87 59.8
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 2.1e-19 99.0 88 58.0
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 2.1e-19 99.0 89 59.6
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 4.8e-19 97.8 88 58.0
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 6.9e-18 94.0 76 60.5
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 5.8e-17 90.9 102 51.0
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.0e-16 90.1 88 53.4
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 6.5e-16 87.4 90 53.3
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 8.4e-16 87.0 81 51.9
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 8.4e-16 87.0 50 74.0
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 9.3e-15 83.6 79 58.2
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 2.1e-14 82.4 84 52.4
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 7.9e-14 80.5 71 60.6
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 2.5e-12 75.5 73 58.9
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 2.5e-12 75.5 110 44.5
Pp3c13_15160 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.6e-11 72.8 76 46.1
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 3.7e-11 71.6 86 46.5
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 6.3e-11 70.9 75 57.3
PRCOL_00006369 Prasinoderma coloniale HOM05D004858 ORTHO05D005600 1.1e-10 70.1 79 43.0
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 4.1e-10 68.2 74 55.4
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 9.0e-10 67.0 69 58.0
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 4.5e-09 64.7 74 51.4
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.3e-08 63.2 74 47.3
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 2.2e-08 62.4 82 40.2
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 5.0e-08 61.2 71 52.1
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 7.2e-07 57.4 71 47.9
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 1.2e-06 56.6 40 62.5
A01p01210 Brassica napus HOM05D004858 ORTHO05D005600 2.7e-06 55.5 57 52.6


User provided reference genes

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