Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021446 Daucus carota HOM05D007648 ORTHO05D009613 4.3e-37 157.5 82 100.0
MD15G1006800 Malus domestica HOM05D007648 ORTHO05D009613 9.9e-26 119.8 82 70.7
Prupe.1G359500 Prunus persica HOM05D007648 ORTHO05D009613 8.4e-25 116.7 81 69.1
MD08G1007600 Malus domestica HOM05D007648 ORTHO05D009613 1.1e-24 116.3 82 69.5
Potri.014G181400 Populus trichocarpa HOM05D007648 ORTHO05D009613 1.4e-24 115.9 81 71.6
Sabra14G0141300 Salix brachista HOM05D000525 ORTHO05D001368 1.4e-24 115.9 81 71.6
Lj5g0008894 Lotus japonicus HOM05D007648 ORTHO05D009613 2.4e-24 115.2 78 71.8
TAR625G0376 Trochodendron aralioides HOM05D007648 ORTHO05D009613 2.4e-24 115.2 82 72.0
ClCG05G015420 Citrullus lanatus HOM05D007648 ORTHO05D009613 4.2e-24 114.4 81 67.9
Cc10_g01140 Coffea canephora HOM05D007648 ORTHO05D009613 4.2e-24 114.4 76 75.0
arahy.Tifrunner.gnm1.ann1.8I3IQY Arachis hypogaea HOM05D007648 ORTHO05D009613 5.4e-24 114.0 79 72.2
Dinv31891 Davidia involucrata HOM05D007648 ORTHO05D009613 5.4e-24 114.0 81 72.8
RcHm_v2.0_Chr6g0303661 Rosa chinensis HOM05D007648 ORTHO05D009613 5.4e-24 114.0 81 66.7
CARHR069590 Cardamine hirsuta HOM05D007648 ORTHO05D009613 9.3e-24 113.2 82 69.5
Sopen06g017690 Solanum pennellii HOM05D007648 ORTHO05D009613 9.3e-24 113.2 79 70.9
CiPaw.07G143700 Carya illinoinensis HOM05D007648 ORTHO05D009613 1.2e-23 112.8 82 70.7
CAN.G22.4 Capsicum annuum HOM05D007648 ORTHO05D009613 1.6e-23 112.5 79 69.6
Aqoxy5G01099 Aquilegia oxysepala HOM05D007648 ORTHO05D009613 2.1e-23 112.1 82 69.5
arahy.Tifrunner.gnm1.ann1.EILY3I Arachis hypogaea HOM05D007648 ORTHO05D009613 2.1e-23 112.1 78 71.8
Carub.0002s2295 Capsella rubella HOM05D007648 ORTHO05D009613 2.1e-23 112.1 82 68.3
Lalb_Chr19g0131601 Lupinus albus HOM05D007648 ORTHO05D009613 2.1e-23 112.1 78 69.2
PGSC0003DMG400023820 Solanum tuberosum HOM05D007648 ORTHO05D009613 2.1e-23 112.1 79 69.6
THA.LOC104811443 Tarenaya hassleriana HOM05D007648 ORTHO05D009613 2.1e-23 112.1 82 67.1
FvH4_2g37960 Fragaria vesca HOM05D007648 ORTHO05D009613 2.7e-23 111.7 81 64.2
Glyma.17G261200 Glycine max HOM05D007648 ORTHO05D009613 2.7e-23 111.7 77 70.1
SalBow7G1731 Salvia bowleyana HOM05D007648 ORTHO05D009613 2.7e-23 111.7 82 70.7
vmacro17151 Vaccinium macrocarpon HOM05D007648 ORTHO05D009613 2.7e-23 111.7 82 69.5
Manes.05G142600 Manihot esculenta HOM05D007648 ORTHO05D009613 3.5e-23 111.3 82 70.7
GSVIVG01008741001 Vitis vinifera HOM05D007648 ORTHO05D009613 3.5e-23 111.3 82 69.5
BraA08t32933Z Brassica rapa HOM05D007648 ORTHO05D009613 4.6e-23 110.9 82 68.3
Haze_22702 Corylus avellana HOM05D007648 ORTHO05D009613 4.6e-23 110.9 80 71.2
QL02p012929 Quercus lobata HOM05D007648 ORTHO05D009613 4.6e-23 110.9 81 69.1
BcaC07g37632 Brassica carinata HOM05D007648 ORTHO05D009613 6.0e-23 110.5 82 68.3
A08p09340 Brassica napus HOM05D007648 ORTHO05D009613 6.0e-23 110.5 82 68.3
BolC8t48002H Brassica oleracea HOM05D007648 ORTHO05D009613 6.0e-23 110.5 82 68.3
Psat6g001120 Pisum sativum HOM05D007648 ORTHO05D009613 6.0e-23 110.5 78 67.9
Duzib093G2040 Durio zibethinus HOM05D007648 ORTHO05D009613 7.9e-23 110.2 82 69.5
Thhalv10019391m.g Eutrema salsugineum HOM05D007648 ORTHO05D009613 7.9e-23 110.2 82 69.5
Phvul.001G002600 Phaseolus vulgaris HOM05D007648 ORTHO05D009613 7.9e-23 110.2 79 69.6
Medtr1g026100 Medicago truncatula HOM05D007648 ORTHO05D009613 1.0e-22 109.8 78 67.9
Rhsim07G0248300 Rhododendron simsii HOM05D007648 ORTHO05D009613 1.0e-22 109.8 82 67.1
AT1G76065 Arabidopsis thaliana HOM05D007648 ORTHO05D009613 1.3e-22 109.4 78 70.5
COL.COLO4_26084 Corchorus olitorius HOM05D007648 ORTHO05D009613 1.3e-22 109.4 81 67.9
MELO3C003728.2 Cucumis melo HOM05D007648 ORTHO05D009613 1.3e-22 109.4 82 64.6
Lsat_1_v5_gn_5_1580 Lactuca sativa HOM05D007648 ORTHO05D009613 1.3e-22 109.4 82 65.9
Aa31LG4G6180 Aethionema arabicum HOM05D007648 ORTHO05D009613 1.8e-22 109.0 80 68.8
BcaB07g30075 Brassica carinata HOM05D007648 ORTHO05D009613 1.8e-22 109.0 82 68.3
CsaV3_3G046120 Cucumis sativus L. HOM05D007648 ORTHO05D009613 1.8e-22 109.0 82 64.6
ECA238G3742 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.8e-22 109.0 74 73.0
FAN15G0474 Fragaria x ananassa HOM05D007648 ORTHO05D009613 1.8e-22 109.0 81 63.0
FAN20G1741 Fragaria x ananassa HOM05D007648 ORTHO05D009613 1.8e-22 109.0 81 63.0
Thecc.08G051700 Theobroma cacao HOM05D007648 ORTHO05D009613 1.8e-22 109.0 81 69.1
Migut.C00899 Erythranthe guttata HOM05D007648 ORTHO05D009613 2.3e-22 108.6 79 69.6
Sed0006121 Sechium edule HOM05D007648 ORTHO05D009613 3.9e-22 107.8 82 64.6
AL2G36100 Arabidopsis lyrata HOM05D007648 ORTHO05D009613 5.1e-22 107.5 78 67.9
Eucgr.F03708 Eucalyptus grandis HOM05D007648 ORTHO05D009613 5.1e-22 107.5 82 67.1
PSO210G3155 Papaver somniferum HOM05D007648 ORTHO05D009613 5.1e-22 107.5 75 72.0
VMungo0647G0751 Vigna mungo HOM05D007648 ORTHO05D009613 5.1e-22 107.5 75 70.7
CSS0030217 Camellia sinensis var. sinensis HOM05D007648 ORTHO05D009613 6.7e-22 107.1 82 69.5
Phvul.001G002300 Phaseolus vulgaris HOM05D007648 ORTHO05D009613 6.7e-22 107.1 78 67.9
Ca_13484_v3 Cicer arietinum L. HOM05D007648 ORTHO05D009613 1.1e-21 106.3 78 65.4
Sc02g0008880 Simmondsia chinensis HOM05D007648 ORTHO05D009613 1.1e-21 106.3 77 68.8
HanXRQChr06g0185111 Helianthus annuus HOM05D007648 ORTHO05D009613 1.5e-21 105.9 82 65.9
Gohir.D01G035600 Gossypium hirsutum HOM05D007648 ORTHO05D009613 2.5e-21 105.1 77 66.2
Rhsim07G0248100 Rhododendron simsii HOM05D007648 ORTHO05D009613 2.5e-21 105.1 77 68.8
TWI12G0541 Tripterygium wilfordii HOM05D007648 ORTHO05D009613 2.5e-21 105.1 81 64.2
Atru.chr13.217 Acer truncatum HOM05D007648 ORTHO05D009613 3.3e-21 104.8 80 67.5
Gohir.A01G044700 Gossypium hirsutum HOM05D007648 ORTHO05D009613 5.6e-21 104.0 77 64.9
Gorai.002G043700 Gossypium raimondii HOM05D007648 ORTHO05D009613 5.6e-21 104.0 77 64.9
Sc02g0008840 Simmondsia chinensis HOM05D007648 ORTHO05D009613 5.6e-21 104.0 77 67.5
Actinidia29767 Actinidia chinensis HOM05D007648 ORTHO05D009613 1.3e-20 102.8 81 66.7
Os02g0667000 Oryza sativa ssp. japonica HOM05D007648 ORTHO05D009613 1.3e-20 102.8 81 63.0
Hund05152 Selenicereus undatus HOM05D000399 ORTHO05D000304 1.3e-20 102.8 75 65.3
CAN.G22.7 Capsicum annuum HOM05D007648 ORTHO05D009613 1.6e-20 102.4 79 64.6
EL10Ac1g02083 Beta vulgaris HOM05D000399 ORTHO05D000304 3.7e-20 101.3 76 68.4
BraA02t08664Z Brassica rapa HOM05D007648 ORTHO05D009613 3.7e-20 101.3 75 69.3
Ah.00g000660 Amaranthus hybridus HOM05D007648 ORTHO05D009613 2.4e-19 98.6 77 63.6
Ciclev10003012m.g Citrus clementina HOM05D007648 ORTHO05D009613 3.1e-19 98.2 82 59.8
HPP92_003481 Vanilla planifolia HOM05D007648 ORTHO05D009613 4.0e-19 97.8 81 60.5
HPP92_026879 Vanilla planifolia HOM05D007648 ORTHO05D009613 6.9e-19 97.1 81 61.7
BolC2t11627H Brassica oleracea HOM05D007648 ORTHO05D009613 7.6e-18 93.6 82 61.0
MBI05_g46751_MAGBIO Magnolia biondii HOM05D007648 ORTHO05D009613 6.5e-17 90.5 73 61.6
CDE04G2628 Ceratophyllum demersum HOM05D007648 ORTHO05D009613 1.1e-16 89.7 76 60.5
Peaxi162Scf00394g00212 Petunia axillaris HOM05D007648 ORTHO05D009613 1.4e-16 89.4 68 63.2
Nitab4.5_0004193g0030 Nicotiana tabacum HOM05D000998 ORTHO05D000806 4.2e-16 87.8 66 65.2
Mapoly0088s0028 Marchantia polymorpha HOM05D007648 ORTHO05D009613 1.3e-14 82.8 77 51.9
Nitab4.5_0000716g0050 Nicotiana tabacum HOM05D000998 ORTHO05D000806 5.1e-14 80.9 61 63.9
AagrBONN_evm.TU.Sc2ySwM_344.3278 Anthoceros agrestis HOM05D007648 ORTHO05D009613 8.7e-14 80.1 76 53.9
C02p55750 Brassica napus HOM05D007648 ORTHO05D009613 1.5e-13 79.3 70 57.1
A02p36690 Brassica napus HOM05D007648 ORTHO05D009613 1.9e-13 79.0 60 65.0
Pp3c8_20950 Physcomitrium patens HOM05D007648 ORTHO05D009613 1.9e-13 79.0 77 51.9
AUR62036713 Chenopodium quinoa HOM05D000399 ORTHO05D000304 2.5e-13 78.6 131 38.2
SalBow1G6040 Salvia bowleyana HOM05D038733 ORTHO05D009613 9.0e-11 70.1 53 69.8
SalBow7G3523 Salvia bowleyana HOM05D038733 ORTHO05D009613 9.0e-11 70.1 53 69.8
unitig_748.g7721 Utricularia gibba HOM05D007648 ORTHO05D009613 1.5e-10 69.3 46 69.6
AUR62013884 Chenopodium quinoa HOM05D007648 ORTHO05D009613 1.0e-09 66.6 44 70.5
Os03g0159800 Oryza sativa ssp. japonica HOM05D007648 ORTHO05D009613 1.9e-08 62.4 45 64.4
MCO07G444 Micromonas commoda HOM05D007648 ORTHO05D009613 7.1e-08 60.5 72 43.1
Actinidia37950 Actinidia chinensis HOM05D007648 ORTHO05D009613 1.2e-07 59.7 39 74.4
BcaC03g17585 Brassica carinata HOM05D007648 ORTHO05D009613 4.6e-07 57.8 80 46.2
Cre14.g626667 Chlamydomonas reinhardtii HOM05D007648 ORTHO05D009613 5.1e-06 54.3 73 42.5


User provided reference genes

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