Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021425 Daucus carota HOM05D004605 ORTHO05D005804 3.5e-126 454.9 221 100.0
Lju361C6G5 Lonicera japonica HOM05D004605 ORTHO05D005804 3.9e-93 345.1 221 71.9
Thecc.04G106100 Theobroma cacao HOM05D004605 ORTHO05D005804 1.1e-90 337.0 216 73.1
Ciclev10012619m.g Citrus clementina HOM05D004605 ORTHO05D005804 1.8e-90 336.3 216 73.1
Potri.017G100000 Populus trichocarpa HOM05D004605 ORTHO05D005804 2.4e-90 335.9 216 72.2
COL.COLO4_10258 Corchorus olitorius HOM05D004605 ORTHO05D005804 1.2e-89 333.6 216 70.8
Rhsim08G0077200 Rhododendron simsii HOM05D004605 ORTHO05D005804 2.0e-89 332.8 221 71.0
Gohir.D07G186600 Gossypium hirsutum HOM05D004605 ORTHO05D005804 2.6e-89 332.4 216 72.2
Gorai.001G207200 Gossypium raimondii HOM05D004605 ORTHO05D005804 2.6e-89 332.4 216 72.2
Gohir.A07G179800 Gossypium hirsutum HOM05D004605 ORTHO05D005804 1.3e-88 330.1 216 72.2
Hund16233 Selenicereus undatus HOM05D004605 ORTHO05D005804 3.8e-88 328.6 216 72.2
GSVIVG01036547001 Vitis vinifera HOM05D004605 ORTHO05D005804 6.5e-88 327.8 216 71.8
Atru.chr8.648 Acer truncatum HOM05D004605 ORTHO05D005804 8.4e-88 327.4 212 72.6
Sabra17G0086200 Salix brachista HOM05D004605 ORTHO05D005804 8.4e-88 327.4 216 69.9
Manes.02G059400 Manihot esculenta HOM05D004605 ORTHO05D005804 3.2e-87 325.5 217 70.0
TAR629G2115 Trochodendron aralioides HOM05D004605 ORTHO05D005804 2.1e-86 322.8 221 71.0
Duzib138G1714 Durio zibethinus HOM05D004605 ORTHO05D005804 1.0e-85 320.5 218 70.2
TWI60G1007 Tripterygium wilfordii HOM05D004605 ORTHO05D005804 1.3e-85 320.1 215 69.8
Duzib133G0947 Durio zibethinus HOM05D004605 ORTHO05D005804 1.8e-85 319.7 216 70.4
Hma1.2p1_0474F.1_g160750 Hydrangea macrophylla HOM05D004605 ORTHO05D005804 1.8e-85 319.7 221 70.1
Peaxi162Scf00020g10235 Petunia axillaris HOM05D004605 ORTHO05D005804 1.8e-85 319.7 216 67.6
Manes.01G103400 Manihot esculenta HOM05D004605 ORTHO05D005804 3.9e-85 318.5 216 67.6
Oeu031839.1 Olea europaea HOM05D004605 ORTHO05D005804 5.1e-85 318.2 217 68.7
Actinidia26268 Actinidia chinensis HOM05D004605 ORTHO05D005804 2.5e-84 315.8 217 66.8
Nitab4.5_0007530g0010 Nicotiana tabacum HOM05D004605 ORTHO05D005804 3.3e-84 315.5 216 68.1
MELO3C026298.2 Cucumis melo HOM05D004605 ORTHO05D005804 5.7e-84 314.7 210 69.5
Cfa007695 Carpinus fangiana HOM05D004605 ORTHO05D005804 7.4e-84 314.3 215 69.8
Cpa.g.sc14.228 Carica papaya HOM05D004605 ORTHO05D005804 1.6e-83 313.2 216 68.5
CsaV3_4G010080 Cucumis sativus L. HOM05D004605 ORTHO05D005804 1.6e-83 313.2 216 68.1
arahy.Tifrunner.gnm1.ann1.90K79T Arachis hypogaea HOM05D004605 ORTHO05D005804 2.2e-83 312.8 217 66.8
HanXRQChr14g0452481 Helianthus annuus HOM05D004605 ORTHO05D005804 2.2e-83 312.8 216 69.9
arahy.Tifrunner.gnm1.ann1.M6S7AL Arachis hypogaea HOM05D004605 ORTHO05D005804 4.8e-83 311.6 217 66.4
Sed0020846 Sechium edule HOM05D004605 ORTHO05D005804 4.8e-83 311.6 216 67.6
ClCG07G016040 Citrullus lanatus HOM05D004605 ORTHO05D005804 6.3e-83 311.2 216 68.1
Haze_14382 Corylus avellana HOM05D004605 ORTHO05D005804 6.3e-83 311.2 215 68.8
Medtr7g016650 Medicago truncatula HOM05D004605 ORTHO05D005804 8.2e-83 310.8 217 65.9
Nitab4.5_0001339g0150 Nicotiana tabacum HOM05D004605 ORTHO05D005804 8.2e-83 310.8 214 67.3
ECA238G2860 Erigeron canadensis HOM05D004605 ORTHO05D005804 1.1e-82 310.5 217 70.5
QL02p065873 Quercus lobata HOM05D004605 ORTHO05D005804 1.1e-82 310.5 213 65.7
Sopen02g034020 Solanum pennellii HOM05D004605 ORTHO05D005804 1.8e-82 309.7 211 66.4
Lalb_Chr10g0092731 Lupinus albus HOM05D004605 ORTHO05D005804 2.4e-82 309.3 217 66.8
PSO675G6317 Papaver somniferum HOM05D004605 ORTHO05D005804 3.1e-82 308.9 215 67.0
CSS0024904 Camellia sinensis var. sinensis HOM05D004605 ORTHO05D005804 4.1e-82 308.5 218 67.0
Solyc02g089230.3 Solanum lycopersicum HOM05D004605 ORTHO05D005804 4.1e-82 308.5 211 66.4
CAN.G497.71 Capsicum annuum HOM05D004605 ORTHO05D005804 6.9e-82 307.8 211 66.8
Glyma.18G273900 Glycine max HOM05D004605 ORTHO05D005804 1.2e-81 307.0 205 68.3
CANSAT64G2231 Cannabis sativa HOM05D004605 ORTHO05D005804 3.4e-81 305.4 207 67.6
PGSC0003DMG400001379 Solanum tuberosum HOM05D004605 ORTHO05D005804 3.4e-81 305.4 211 65.4
PSO732G0027 Papaver somniferum HOM05D004605 ORTHO05D005804 4.5e-81 305.1 215 65.6
SGA_v2.0_scaffold148G36445 Striga asiatica HOM05D004605 ORTHO05D005804 5.9e-81 304.7 213 67.1
Lsat_1_v5_gn_2_90241 Lactuca sativa HOM05D004605 ORTHO05D005804 7.7e-81 304.3 216 68.1
VMungo1383G2960 Vigna mungo HOM05D004605 ORTHO05D005804 1.0e-80 303.9 205 68.3
Glyma.08G251200 Glycine max HOM05D004605 ORTHO05D005804 2.2e-80 302.8 205 68.3
Carub.0007s3694 Capsella rubella HOM05D004605 ORTHO05D005804 2.9e-80 302.4 217 65.9
AT5G38900 Arabidopsis thaliana HOM05D004605 ORTHO05D005804 1.4e-79 300.1 217 65.4
Aqoxy3G03715 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 2.5e-79 299.3 219 63.9
Phvul.008G027000 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 4.2e-79 298.5 205 65.9
Phvul.008G026800 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 5.5e-79 298.1 205 66.3
AL7G51520 Arabidopsis lyrata HOM05D004605 ORTHO05D005804 1.2e-78 297.0 217 63.6
BraA07t29690Z Brassica rapa HOM05D004605 ORTHO05D005804 1.2e-78 297.0 217 63.6
Ca_06902_v3 Cicer arietinum L. HOM05D004605 ORTHO05D005804 1.2e-78 297.0 207 65.7
Migut.H00587 Erythranthe guttata HOM05D004605 ORTHO05D005804 1.2e-78 297.0 208 66.3
A07p19860 Brassica napus HOM05D004605 ORTHO05D005804 1.6e-78 296.6 217 63.6
CiPaw.03G083000 Carya illinoinensis HOM05D004605 ORTHO05D005804 2.7e-78 295.8 215 62.3
FvH4_6g46390 Fragaria vesca HOM05D004605 ORTHO05D005804 2.7e-78 295.8 217 64.1
Phvul.008G027600 Phaseolus vulgaris HOM05D004605 ORTHO05D005804 2.7e-78 295.8 205 66.8
BcaB02g07994 Brassica carinata HOM05D004605 ORTHO05D005804 3.6e-78 295.4 217 63.6
C06p18440 Brassica napus HOM05D004605 ORTHO05D005804 3.6e-78 295.4 217 63.6
Sp7g03000 Schrenkiella parvula HOM05D004605 ORTHO05D005804 3.6e-78 295.4 217 63.6
Aa31LG9G16810 Aethionema arabicum HOM05D004605 ORTHO05D005804 4.6e-78 295.0 217 65.9
Thhalv10027927m.g Eutrema salsugineum HOM05D004605 ORTHO05D005804 4.6e-78 295.0 217 64.5
SalBow1G3999 Salvia bowleyana HOM05D004605 ORTHO05D005804 4.6e-78 295.0 214 64.5
TPR.G23408 Trifolium pratense HOM05D004605 ORTHO05D005804 4.6e-78 295.0 217 63.6
BcaC08g44406 Brassica carinata HOM05D004605 ORTHO05D005804 1.8e-77 293.1 217 63.1
BolC6t37056H Brassica oleracea HOM05D004605 ORTHO05D005804 1.8e-77 293.1 217 63.1
Eucgr.I02062 Eucalyptus grandis HOM05D004605 ORTHO05D005804 1.8e-77 293.1 248 58.1
Aqoxy3G03714 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 5.1e-77 291.6 221 61.1
Lj1g0025970 Lotus japonicus HOM05D004605 ORTHO05D005804 5.1e-77 291.6 207 64.7
RcHm_v2.0_Chr2g0164921 Rosa chinensis HOM05D004605 ORTHO05D005804 8.8e-77 290.8 217 63.1
CiPaw.03G083100 Carya illinoinensis HOM05D004605 ORTHO05D005804 2.6e-76 289.3 216 63.4
Aqoxy3G03716 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 3.3e-76 288.9 219 60.7
MD09G1074300 Malus domestica HOM05D004605 ORTHO05D005804 3.3e-76 288.9 208 66.8
Prupe.3G249100 Prunus persica HOM05D004605 ORTHO05D005804 5.7e-76 288.1 207 66.7
THA.LOC104805526 Tarenaya hassleriana HOM05D004605 ORTHO05D005804 7.4e-76 287.7 207 63.3
Psat3g203400 Pisum sativum HOM05D004605 ORTHO05D005804 2.2e-75 286.2 216 61.1
FAN05G4053 Fragaria x ananassa HOM05D004605 ORTHO05D005804 4.8e-75 285.0 225 59.6
VMungo1383G3490 Vigna mungo HOM05D004605 ORTHO05D005804 4.8e-75 285.0 207 64.7
EL10Ac2g04442 Beta vulgaris HOM05D004605 ORTHO05D005804 6.9e-74 281.2 211 62.6
MD17G1065700 Malus domestica HOM05D004605 ORTHO05D005804 6.9e-74 281.2 207 65.2
CARHR263630 Cardamine hirsuta HOM05D004605 ORTHO05D005804 9.1e-74 280.8 207 63.3
Zm00001eb219300 Zea mays HOM05D004605 ORTHO05D005804 2.6e-73 279.3 221 61.5
MSTRG.15437 Avicennia marina HOM05D004605 ORTHO05D005804 8.5e-72 274.2 213 62.4
MBI16_g34534_MAGBIO Magnolia biondii HOM05D004605 ORTHO05D005804 2.5e-71 272.7 220 61.8
AUR62023160 Chenopodium quinoa HOM05D004605 ORTHO05D005804 4.2e-71 271.9 206 63.1
Zm00001eb049940 Zea mays HOM05D004605 ORTHO05D005804 7.2e-71 271.2 217 61.3
Os03g0598900 Oryza sativa ssp. japonica HOM05D004605 ORTHO05D005804 2.1e-70 269.6 214 60.3
HPP92_012260 Vanilla planifolia HOM05D004605 ORTHO05D005804 3.6e-70 268.9 216 58.8
ATR0827G055 Amborella trichopoda HOM05D004605 ORTHO05D005804 1.8e-69 266.5 221 58.8
FAN14G2038 Fragaria x ananassa HOM05D004605 ORTHO05D005804 1.1e-68 263.8 195 62.1
MSTRG.15436 Avicennia marina HOM05D004605 ORTHO05D005804 5.7e-68 261.5 191 62.3
SMO223G0030 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 3.7e-67 258.8 203 60.1
Sc10g0000600 Simmondsia chinensis HOM05D004605 ORTHO05D005804 1.2e-65 253.8 174 66.1
Eucgr.B03744 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.0e-65 253.1 198 59.1
Prupe.3G249000 Prunus persica HOM05D004605 ORTHO05D005804 5.0e-64 248.4 206 54.4
Eucgr.L00721 Eucalyptus grandis HOM05D004605 ORTHO05D005804 2.5e-63 246.1 198 58.6
Mapoly0001s0057 Marchantia polymorpha HOM05D004605 ORTHO05D005804 3.2e-63 245.7 209 54.5
vmacro18128 Vaccinium macrocarpon HOM05D004605 ORTHO05D005804 4.2e-63 245.4 193 59.6
Pp3c14_20450 Physcomitrium patens HOM05D004605 ORTHO05D005804 6.1e-62 241.5 208 53.8
arahy.Tifrunner.gnm1.ann1.XASR8W Arachis hypogaea HOM05D004605 ORTHO05D005804 1.8e-61 240.0 204 56.9
AUR62009481 Chenopodium quinoa HOM05D004605 ORTHO05D005804 4.4e-60 235.3 199 57.8
FAN02G3403 Fragaria x ananassa HOM05D004605 ORTHO05D005804 2.8e-59 232.6 170 62.4
Cc07_g04470 Coffea canephora HOM05D004605 ORTHO05D005804 7.7e-57 224.6 146 67.8
AagrBONN_evm.TU.Sc2ySwM_340.409 Anthoceros agrestis HOM05D004605 ORTHO05D005804 3.2e-55 219.2 193 54.4
FvH4_6g46370 Fragaria vesca HOM05D004605 ORTHO05D005804 1.6e-54 216.9 219 49.3
RcHm_v2.0_Chr2g0164911 Rosa chinensis HOM05D004605 ORTHO05D005804 3.6e-54 215.7 219 48.4
SEGI_21234 Sequoiadendron giganteum HOM05D004605 ORTHO05D005804 3.6e-54 215.7 209 46.9
AUR62024435 Chenopodium quinoa HOM05D004605 ORTHO05D005804 1.4e-53 213.8 144 66.7
QL02p053766 Quercus lobata HOM05D004605 ORTHO05D005804 1.2e-52 210.7 144 63.2
Dinv33862 Davidia involucrata HOM05D004605 ORTHO05D005804 3.7e-51 205.7 131 71.0
FAN02G1482 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.7e-51 205.7 219 47.5
FAN09G1153 Fragaria x ananassa HOM05D004605 ORTHO05D005804 4.8e-51 205.3 238 47.9
Eucgr.L00305 Eucalyptus grandis HOM05D004605 ORTHO05D005804 8.0e-46 188.0 126 65.1
AagrBONN_evm.TU.Sc2ySwM_340.410 Anthoceros agrestis HOM05D004605 ORTHO05D005804 6.8e-45 184.9 177 50.3
Cre12.g553700 Chlamydomonas reinhardtii HOM05D004605 ORTHO05D005804 8.8e-45 184.5 208 45.2
SalBow3G1842 Salvia bowleyana HOM05D004605 ORTHO05D005804 2.6e-44 183.0 173 55.5
FAN09G3310 Fragaria x ananassa HOM05D004605 ORTHO05D005804 3.5e-41 172.6 173 46.8
Aqoxy3G03713 Aquilegia oxysepala HOM05D004605 ORTHO05D005804 1.6e-38 163.7 115 69.6
FAN05G1095 Fragaria x ananassa HOM05D004605 ORTHO05D005804 9.8e-36 154.5 219 39.7
CDE10G0487 Ceratophyllum demersum HOM05D004605 ORTHO05D005804 1.5e-31 140.6 109 63.3
Cfa025436 Carpinus fangiana HOM05D004605 ORTHO05D005804 9.2e-26 121.3 218 36.7
Nn4g23522 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.1e-23 114.4 75 72.0
PSO591G0315 Papaver somniferum HOM05D004605 ORTHO05D005804 1.5e-23 114.0 77 64.9
MCO08G262 Micromonas commoda HOM05D004605 ORTHO05D005804 1.2e-22 110.9 237 32.5
Cc07_g04480 Coffea canephora HOM05D004605 ORTHO05D005804 2.8e-22 109.8 81 67.9
HPP92_012204 Vanilla planifolia HOM05D004605 ORTHO05D005804 3.1e-21 106.3 136 44.9
Pp3s30_530 Physcomitrium patens HOM05D004605 ORTHO05D005804 9.8e-20 101.3 209 34.9
QL02p036101 Quercus lobata HOM05D004605 ORTHO05D005804 6.4e-19 98.6 116 44.8
QL10p049039 Quercus lobata HOM05D004605 ORTHO05D005804 6.4e-19 98.6 116 44.8
Mapoly0107s0018 Marchantia polymorpha HOM05D004605 ORTHO05D005804 4.1e-18 95.9 208 31.2
QL10p051328 Quercus lobata HOM05D004605 ORTHO05D005804 4.1e-18 95.9 116 43.1
BolC3t14639H Brassica oleracea HOM05D004605 ORTHO05D005804 1.0e-16 91.3 68 60.3
CBR_g36839 Chara braunii HOM05D004605 ORTHO05D005804 2.5e-15 86.7 199 28.1
Nn1g08579 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.2e-12 77.8 84 47.6
Nn1g08577 Nelumbo nucifera HOM05D004605 ORTHO05D005804 9.9e-12 74.7 56 62.5
SMO270G0021 Selaginella moellendorffii HOM05D004605 ORTHO05D005804 9.9e-12 74.7 201 28.4
Nn1g08580 Nelumbo nucifera HOM05D004605 ORTHO05D005804 1.2e-09 67.8 49 63.3
HPP92_012246 Vanilla planifolia HOM05D004605 ORTHO05D005804 3.5e-09 66.2 109 39.4
arahy.Tifrunner.gnm1.ann1.2EY802 Arachis hypogaea HOM05D004605 ORTHO05D005804 1.0e-08 64.7 47 61.7
HanXRQChr04g0116811 Helianthus annuus HOM05D004605 ORTHO05D005804 3.0e-08 63.2 40 70.0
PRCOL_00001065 Prasinoderma coloniale HOM05D004605 ORTHO05D005804 8.6e-08 61.6 145 29.0
BcaC01g05772 Brassica carinata HOM05D004605 ORTHO05D032242 9.6e-07 58.2 83 41.0
BolC3t14636H Brassica oleracea HOM05D004605 ORTHO05D032242 2.8e-06 56.6 83 39.8


User provided reference genes

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