Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021403 Daucus carota HOM05D007448 ORTHO05D009392 4.6e-43 177.6 93 100.0
Hma1.2p1_1003F.1_g246780 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 3.4e-22 108.2 85 67.1
Hma1.2p1_1488F.1_g286625 Hydrangea macrophylla HOM05D007448 ORTHO05D009392 3.4e-22 108.2 85 67.1
Sopen12g006840 Solanum pennellii HOM05D007448 ORTHO05D009392 2.7e-19 98.6 94 57.4
Nn1g03921 Nelumbo nucifera HOM05D007448 ORTHO05D009392 4.6e-19 97.8 94 58.5
Solyc12g013500.2 Solanum lycopersicum HOM05D007448 ORTHO05D009392 6.0e-19 97.4 94 56.4
PGSC0003DMG400008573 Solanum tuberosum HOM05D007448 ORTHO05D009392 7.8e-19 97.1 94 56.4
Atru.chr4.846 Acer truncatum HOM05D007448 ORTHO05D009392 2.3e-18 95.5 66 68.2
HanXRQChr08g0234641 Helianthus annuus HOM05D007448 ORTHO05D009392 2.3e-18 95.5 67 74.6
Lsat_1_v5_gn_5_6900 Lactuca sativa HOM05D007448 ORTHO05D009392 5.1e-18 94.4 91 58.2
Nitab4.5_0000639g0040 Nicotiana tabacum HOM05D007448 ORTHO05D009392 6.6e-18 94.0 94 55.3
GSVIVG01014426001 Vitis vinifera HOM05D007448 ORTHO05D009392 8.6e-18 93.6 91 56.0
AUR62015605 Chenopodium quinoa HOM05D007448 ORTHO05D009392 1.1e-17 93.2 78 60.3
Peaxi162Scf00000g00504 Petunia axillaris HOM05D007448 ORTHO05D009392 1.1e-17 93.2 94 54.3
Gohir.A13G143800 Gossypium hirsutum HOM05D007448 ORTHO05D009392 1.5e-17 92.8 66 71.2
Gohir.D13G148600 Gossypium hirsutum HOM05D007448 ORTHO05D009392 1.5e-17 92.8 66 71.2
Cpa.g.sc80.111 Carica papaya HOM05D007448 ORTHO05D009392 2.5e-17 92.0 77 63.6
CiPaw.11G176100 Carya illinoinensis HOM05D007448 ORTHO05D009392 2.5e-17 92.0 65 72.3
Duzib213G0053 Durio zibethinus HOM05D007448 ORTHO05D009392 2.5e-17 92.0 65 72.3
Eucgr.F01082 Eucalyptus grandis HOM05D007448 ORTHO05D009392 2.5e-17 92.0 68 67.6
Gorai.013G166400 Gossypium raimondii HOM05D007448 ORTHO05D009392 3.3e-17 91.7 66 71.2
Oeu019361.1 Olea europaea HOM05D007448 ORTHO05D009392 3.3e-17 91.7 63 76.2
Thecc.07G071800 Theobroma cacao HOM05D007448 ORTHO05D009392 5.6e-17 90.9 66 69.7
ClCG11G018440 Citrullus lanatus HOM05D007448 ORTHO05D009392 1.6e-16 89.4 66 68.2
CsaV3_3G044380 Cucumis sativus L. HOM05D007448 ORTHO05D009392 1.6e-16 89.4 74 63.5
Potri.001G406200 Populus trichocarpa HOM05D007448 ORTHO05D009392 1.6e-16 89.4 78 62.8
Nitab4.5_0008360g0010 Nicotiana tabacum HOM05D007448 ORTHO05D009392 2.1e-16 89.0 94 53.2
PGR083G2019 Punica granatum HOM05D007448 ORTHO05D009392 2.1e-16 89.0 84 57.1
RcHm_v2.0_Chr5g0035321 Rosa chinensis HOM05D007448 ORTHO05D009392 2.1e-16 89.0 66 68.2
ECA246G0067 Erigeron canadensis HOM05D007448 ORTHO05D009392 2.8e-16 88.6 93 54.8
Glyma.06G253900 Glycine max HOM05D007448 ORTHO05D009392 2.8e-16 88.6 65 69.2
Manes.03G111700 Manihot esculenta HOM05D007448 ORTHO05D009392 2.8e-16 88.6 66 69.7
Sabra16G0269700 Salix brachista HOM05D007448 ORTHO05D009392 2.8e-16 88.6 72 61.1
Sed0026843 Sechium edule HOM05D007448 ORTHO05D009392 6.2e-16 87.4 68 66.2
MD03G1219500 Malus domestica HOM05D007448 ORTHO05D009392 8.1e-16 87.0 66 65.2
Cfa020508 Carpinus fangiana HOM05D007448 ORTHO05D009392 1.4e-15 86.3 64 67.2
FAN21G3287 Fragaria x ananassa HOM05D007448 ORTHO05D009392 1.4e-15 86.3 66 66.7
Lj3g0013278 Lotus japonicus HOM05D007448 ORTHO05D009392 1.4e-15 86.3 65 69.2
arahy.Tifrunner.gnm1.ann1.UX5IA9 Arachis hypogaea HOM05D007448 ORTHO05D009392 1.8e-15 85.9 93 53.8
Prupe.4G189600 Prunus persica HOM05D007448 ORTHO05D009392 1.8e-15 85.9 66 65.2
FvH4_3g20900 Fragaria vesca HOM05D007448 ORTHO05D009392 3.1e-15 85.1 66 65.2
FAN25G3793 Fragaria x ananassa HOM05D007448 ORTHO05D009392 3.1e-15 85.1 66 65.2
Rhsim04G0017500 Rhododendron simsii HOM05D007448 ORTHO05D009392 5.2e-15 84.3 58 70.7
arahy.Tifrunner.gnm1.ann1.GZ4R1Y Arachis hypogaea HOM05D007448 ORTHO05D009392 8.9e-15 83.6 93 51.6
Gorai.007G085800 Gossypium raimondii HOM05D007448 ORTHO05D009392 8.9e-15 83.6 66 65.2
Phvul.011G154800 Phaseolus vulgaris HOM05D007448 ORTHO05D009392 8.9e-15 83.6 65 64.6
Sc03g0009610 Simmondsia chinensis HOM05D007448 ORTHO05D009392 8.9e-15 83.6 93 51.6
TWI39G0054 Tripterygium wilfordii HOM05D007448 ORTHO05D009392 1.2e-14 83.2 73 58.9
vmacro09556 Vaccinium macrocarpon HOM05D007448 ORTHO05D009392 1.2e-14 83.2 84 53.6
Ciclev10010083m.g Citrus clementina HOM05D007448 ORTHO05D009392 2.0e-14 82.4 75 61.3
TPR.G23252 Trifolium pratense HOM05D007448 ORTHO05D009392 2.0e-14 82.4 60 70.0
PSO421G0428 Papaver somniferum HOM05D007448 ORTHO05D009392 2.6e-14 82.0 58 70.7
Cc06_g05250 Coffea canephora HOM05D007448 ORTHO05D009392 3.4e-14 81.6 62 69.4
Migut.M00875 Erythranthe guttata HOM05D007448 ORTHO05D009392 3.4e-14 81.6 80 58.8
Medtr7g057740 Medicago truncatula HOM05D007448 ORTHO05D009392 3.4e-14 81.6 93 48.4
Ciclev10010683m.g Citrus clementina HOM05D007448 ORTHO05D009392 4.4e-14 81.3 75 60.0
Psat3g145520 Pisum sativum HOM05D007448 ORTHO05D009392 4.4e-14 81.3 65 66.2
Gohir.A11G075500 Gossypium hirsutum HOM05D007448 ORTHO05D009392 1.7e-13 79.3 65 66.2
CANSAT11G1525 Cannabis sativa HOM05D007448 ORTHO05D009392 2.9e-13 78.6 60 66.7
CDE02G3786 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 2.9e-13 78.6 94 48.9
MELO3C018199.2 Cucumis melo HOM05D003028 ORTHO05D003465 2.9e-13 78.6 61 63.9
THA.LOC104822630 Tarenaya hassleriana HOM05D007448 ORTHO05D009392 4.9e-13 77.8 73 56.2
Aqoxy4G01379 Aquilegia oxysepala HOM05D007448 ORTHO05D009392 6.4e-13 77.4 68 64.7
Actinidia18748 Actinidia chinensis HOM05D007448 ORTHO05D009392 1.9e-12 75.9 55 65.5
Thhalv10021866m.g Eutrema salsugineum HOM05D007448 ORTHO05D009392 3.2e-12 75.1 72 54.2
Sp3g23710 Schrenkiella parvula HOM05D007448 ORTHO05D009392 4.2e-12 74.7 72 54.2
unitig_899.g15312 Utricularia gibba HOM05D007448 ORTHO05D009392 5.4e-12 74.3 66 59.1
BcaC06g35910 Brassica carinata HOM05D007448 ORTHO05D009392 7.1e-12 73.9 72 54.2
BolC7t41418H Brassica oleracea HOM05D007448 ORTHO05D009392 7.1e-12 73.9 72 54.2
BcaB06g26831 Brassica carinata HOM05D007448 ORTHO05D009392 9.3e-12 73.6 72 54.2
Os03g0581650 Oryza sativa ssp. japonica HOM05D007448 ORTHO05D009392 9.3e-12 73.6 58 62.1
A07p06520 Brassica napus HOM05D007448 ORTHO05D009392 1.2e-11 73.2 72 54.2
BraA07t28447Z Brassica rapa HOM05D007448 ORTHO05D009392 1.2e-11 73.2 72 54.2
Zm00001eb049080 Zea mays HOM05D007448 ORTHO05D009392 2.1e-11 72.4 58 60.3
CAN.G1320.10 Capsicum annuum HOM05D007448 ORTHO05D009392 3.5e-11 71.6 76 51.3
CDE05G1526 Ceratophyllum demersum HOM05D007448 ORTHO05D009392 4.6e-11 71.2 94 46.8
AL3G25660 Arabidopsis lyrata HOM05D007448 ORTHO05D009392 6.0e-11 70.9 72 52.8
Carub.0003s1319 Capsella rubella HOM05D007448 ORTHO05D009392 7.8e-11 70.5 72 52.8
AT3G13677 Arabidopsis thaliana HOM05D007448 ORTHO05D009392 3.0e-10 68.6 72 51.4
AUR62035371 Chenopodium quinoa HOM05D007448 ORTHO05D009392 3.0e-10 68.6 76 47.4
AUR62035373 Chenopodium quinoa HOM05D007448 ORTHO05D009392 5.1e-10 67.8 68 50.0
Aa31LG8G850 Aethionema arabicum HOM05D007448 ORTHO05D009392 6.6e-10 67.4 73 49.3
CSS0027029 Camellia sinensis var. sinensis HOM05D007448 ORTHO05D009392 1.1e-09 66.6 75 46.7
AUR62029317 Chenopodium quinoa HOM05D007448 ORTHO05D009392 1.5e-09 66.2 79 45.6
QL08p018291 Quercus lobata HOM05D007448 ORTHO05D009392 1.9e-09 65.9 55 54.5
Lalb_Chr03g0030401 Lupinus albus HOM05D007448 ORTHO05D009392 2.5e-09 65.5 65 55.4
Oeu006763.2 Olea europaea HOM05D007448 ORTHO05D009392 2.5e-09 65.5 61 57.4
TAR626G0388 Trochodendron aralioides HOM05D007448 ORTHO05D009392 3.6e-08 61.6 75 41.3
EL10Ac4g09050 Beta vulgaris HOM05D007448 ORTHO05D009392 8.1e-08 60.5 47 59.6
Glyma.12G147500 Glycine max HOM05D007448 ORTHO05D009392 8.1e-08 60.5 46 63.0
Ah.06g183620 Amaranthus hybridus HOM05D007448 ORTHO05D009392 1.1e-07 60.1 48 58.3
SalBow8G2366 Salvia bowleyana HOM05D007448 ORTHO05D009392 1.8e-07 59.3 50 60.0
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 3.1e-07 58.5 66 48.5
Pp3c7_12690 Physcomitrium patens HOM05D007448 ORTHO05D009392 6.9e-07 57.4 60 51.7
MSTRG.14378 Avicennia marina HOM05D007448 ORTHO05D009392 1.2e-06 56.6 72 47.2
FAN11G2341 Fragaria x ananassa HOM05D007448 ORTHO05D009392 5.8e-06 54.3 47 55.3


User provided reference genes

Program Settings