Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 0.0e+00 1198.0 600 100.0
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 1.5e-208 729.9 673 60.8
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 3.4e-208 728.8 673 60.8
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 1.6e-205 719.9 672 60.3
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 2.1e-205 719.5 673 60.2
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 7.9e-205 717.6 680 58.4
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 1.6e-202 709.9 621 62.8
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 7.6e-200 701.0 672 58.0
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 8.4e-199 697.6 683 58.0
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 8.4e-199 697.6 683 58.0
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 3.2e-198 695.7 675 57.9
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 2.7e-197 692.6 677 57.2
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 1.3e-196 690.3 675 57.8
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 1.3e-196 690.3 783 52.7
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 2.3e-196 689.5 675 59.1
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.3e-194 683.7 670 57.8
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 1.6e-194 683.3 665 56.4
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 1.6e-194 683.3 676 58.0
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.8e-194 682.6 677 56.4
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 4.8e-194 681.8 667 57.7
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 1.4e-193 680.2 671 56.6
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 9.0e-193 677.6 703 54.9
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 1.2e-192 677.2 681 56.4
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 2.6e-192 676.0 679 55.8
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 1.3e-191 673.7 668 56.9
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 2.9e-191 672.5 675 55.4
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 1.4e-190 670.2 682 54.8
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 1.6e-189 666.8 664 55.7
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 2.1e-189 666.4 662 56.0
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 3.9e-188 662.1 668 56.9
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 2.5e-187 659.4 698 54.6
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 4.8e-186 655.2 677 55.4
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 2.4e-185 652.9 645 58.9
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 3.1e-185 652.5 687 54.3
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 5.3e-185 651.7 727 53.4
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 5.3e-185 651.7 648 57.1
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 9.1e-185 651.0 680 56.0
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 9.1e-185 651.0 669 54.6
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 3.4e-184 649.0 667 54.9
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 2.9e-183 646.0 663 56.1
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 2.5e-182 642.9 677 53.6
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 2.5e-182 642.9 677 55.2
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 7.2e-182 641.3 683 53.7
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 8.8e-180 634.4 633 57.2
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 1.1e-179 634.0 665 54.7
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 9.7e-179 630.9 678 52.9
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 2.8e-178 629.4 632 56.0
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 4.8e-178 628.6 679 54.1
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 6.3e-178 628.2 637 56.4
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.4e-177 627.1 671 52.9
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 1.4e-177 627.1 661 54.0
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 1.8e-177 626.7 670 55.4
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 5.9e-176 621.7 679 52.6
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 1.3e-175 620.5 674 54.0
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 2.7e-173 612.8 595 56.6
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 1.0e-172 610.9 736 50.3
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 6.7e-172 608.2 650 54.6
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 6.7e-172 608.2 672 53.9
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 4.8e-170 602.1 582 57.9
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 1.1e-169 600.9 678 51.6
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 5.3e-169 598.6 630 53.5
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 2.6e-168 596.3 662 52.9
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 2.5e-166 589.7 679 52.6
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 5.5e-166 588.6 640 52.8
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 2.7e-165 586.3 665 51.7
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 3.6e-165 585.9 626 53.8
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 3.3e-163 579.3 699 51.1
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 1.8e-161 573.5 685 50.4
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 4.1e-161 572.4 654 53.8
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 1.7e-159 567.0 439 69.5
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 1.1e-158 564.3 685 49.8
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 6.1e-157 558.5 565 57.7
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 2.3e-156 556.6 546 57.1
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 3.7e-154 549.3 588 54.6
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 2.4e-153 546.6 564 56.4
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 5.9e-152 542.0 663 49.9
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 5.0e-151 538.9 680 49.4
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 2.5e-150 536.6 455 63.5
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 9.5e-150 534.6 666 50.5
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 6.8e-148 528.5 664 48.9
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 8.9e-148 528.1 661 48.9
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 8.9e-148 528.1 661 48.9
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 2.6e-147 526.6 661 48.7
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 5.4e-145 518.8 677 48.7
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 5.4e-145 518.8 671 49.3
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 4.5e-144 515.8 674 47.8
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 1.3e-143 514.2 665 48.0
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 2.9e-143 513.1 669 47.8
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 2.9e-143 513.1 669 47.8
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 3.1e-140 503.1 660 47.6
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 3.1e-140 503.1 660 47.6
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 9.8e-139 498.0 590 51.5
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 6.4e-138 495.4 699 45.2
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 1.1e-137 494.6 449 62.4
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 3.2e-137 493.0 547 51.9
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 1.0e-135 488.0 672 47.8
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 8.9e-132 474.9 683 44.2
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 3.7e-130 469.5 531 52.9
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 1.4e-129 467.6 688 44.8
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 6.6e-127 458.8 627 46.6
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 2.8e-125 453.4 451 56.1
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 2.7e-120 436.8 672 43.8
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 1.0e-119 434.9 411 56.7
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 2.1e-112 410.6 604 43.9
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 4.6e-112 409.5 678 41.6
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 6.2e-109 399.1 647 42.8
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 2.6e-107 393.7 665 39.8
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 4.3e-102 376.3 408 55.4
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 6.9e-100 369.0 644 40.1
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 1.1e-89 335.1 456 47.1
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 9.6e-86 322.0 624 39.6
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 2.1e-80 304.3 614 38.4
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 1.3e-74 285.0 486 40.7
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 3.2e-73 280.4 543 39.2
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 1.4e-71 275.0 284 58.8
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 1.1e-68 265.4 284 55.6
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.0e-63 248.8 272 55.5
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.7e-61 241.5 334 43.4
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 3.8e-58 230.3 318 43.4
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 5.0e-58 229.9 496 35.7
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 7.4e-54 216.1 201 56.2
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 5.9e-51 206.5 288 40.6
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 2.1e-48 198.0 244 53.3
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 3.4e-38 164.1 229 42.4
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 3.7e-37 160.6 277 43.7
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 2.4e-36 157.9 83 88.0
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 2.3e-34 151.4 166 47.0
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.9e-33 148.3 266 44.4
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 5.2e-31 140.2 168 47.6
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 7.0e-28 129.8 165 54.5
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 3.5e-27 127.5 249 36.1
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 1.0e-26 125.9 199 44.2
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 7.3e-25 119.8 68 94.1
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.6e-24 118.6 68 94.1
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 1.2e-22 112.5 144 51.4
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 7.0e-20 103.2 58 82.8
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.2e-19 102.4 74 78.4
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 1.7e-18 98.6 63 73.0
SalBow8G0731 Salvia bowleyana HOM05D004640 ORTHO05D005489 6.2e-16 90.1 51 86.3
TAR625G0944 Trochodendron aralioides HOM05D004640 ORTHO05D005489 4.4e-14 84.0 113 38.9
SHI16685 Sapria himalayana HOM05D004640 ORTHO05D005489 9.8e-14 82.8 167 30.5
Haze_01802 Corylus avellana HOM05D004640 ORTHO05D005489 6.4e-13 80.1 101 42.6
A03p68870 Brassica napus HOM05D004640 ORTHO05D005489 1.9e-12 78.6 106 38.7
BraSC39t46178Z Brassica rapa HOM05D004640 ORTHO05D005489 1.9e-12 78.6 106 38.7
arahy.Tifrunner.gnm1.ann1.VBF1S6 Arachis hypogaea HOM05D002443 ORTHO05D002674 2.7e-11 74.7 137 42.3
arahy.Tifrunner.gnm1.ann1.FS0M29 Arachis hypogaea HOM05D001673 ORTHO05D012548 6.0e-11 73.6 53 66.0
Lsat_1_v5_gn_5_81581 Lactuca sativa HOM05D004640 ORTHO05D005489 2.3e-10 71.6 113 38.1
TAR625G0012 Trochodendron aralioides HOM05D004640 ORTHO05D005489 3.0e-10 71.2 117 42.7
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 6.6e-10 70.1 52 61.5
SHI16674 Sapria himalayana HOM05D004640 ORTHO05D005489 1.1e-07 62.8 35 77.1
SEGI_15466 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 1.8e-07 62.0 125 34.4
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 4.0e-07 60.8 32 93.8
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 2.0e-06 58.5 34 88.2
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 2.0e-06 58.5 34 91.2
SHI16673 Sapria himalayana HOM05D004640 ORTHO05D005489 3.4e-06 57.8 51 64.7
Hma1.2p1_0340F.1_g130025 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 9.9e-06 56.2 70 47.1
Hma1.2p1_2041F.1_g312210 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 9.9e-06 56.2 70 47.1


User provided reference genes

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