Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021260 Daucus carota HOM05D003807 ORTHO05D002847 2.9e-111 405.2 199 100.0
DCAR_013031 Daucus carota HOM05D001711 ORTHO05D002847 8.3e-18 94.7 214 35.0
Duzib133G1073 Durio zibethinus HOM05D001711 ORTHO05D002847 4.3e-14 82.4 214 30.8
Thecc.01G173400 Theobroma cacao HOM05D001711 ORTHO05D002847 9.5e-14 81.3 144 36.8
TAR626G1107 Trochodendron aralioides HOM05D001711 ORTHO05D002847 4.7e-13 79.0 152 35.5
Manes.09G079619 Manihot esculenta HOM05D001711 ORTHO05D002847 6.2e-13 78.6 170 35.3
Oeu022924.1 Olea europaea HOM05D003807 ORTHO05D002847 6.2e-13 78.6 206 32.5
Gohir.D07G087400 Gossypium hirsutum HOM05D003807 ORTHO05D002847 1.1e-12 77.8 174 36.8
Potri.006G006300 Populus trichocarpa HOM05D001711 ORTHO05D002847 1.4e-12 77.4 151 37.7
ClCG07G010990 Citrullus lanatus HOM05D001711 ORTHO05D002847 3.1e-12 76.3 195 29.7
VMungo0647G1411 Vigna mungo HOM05D001711 ORTHO05D002847 3.1e-12 76.3 183 32.2
CiPaw.03G111200 Carya illinoinensis HOM05D001711 ORTHO05D002847 4.0e-12 75.9 195 36.4
Duzib211G0113 Durio zibethinus HOM05D001711 ORTHO05D002847 8.9e-12 74.7 143 35.0
CiPaw.04G072500 Carya illinoinensis HOM05D001711 ORTHO05D002847 1.5e-11 73.9 201 31.8
Atru.chr8.1002 Acer truncatum HOM05D003807 ORTHO05D002847 3.4e-11 72.8 182 30.8
CsaV3_4G007280 Cucumis sativus L. HOM05D001711 ORTHO05D002847 4.4e-11 72.4 204 29.9
Manes.08G068801 Manihot esculenta HOM05D001711 ORTHO05D002847 4.4e-11 72.4 176 33.5
TAR627G0259 Trochodendron aralioides HOM05D003807 ORTHO05D002847 5.8e-11 72.0 159 33.3
Actinidia22425 Actinidia chinensis HOM05D003807 ORTHO05D002847 7.5e-11 71.6 166 34.3
Cfa022497 Carpinus fangiana HOM05D001711 ORTHO05D002847 7.5e-11 71.6 144 36.1
FAN02G4313 Fragaria x ananassa HOM05D003807 ORTHO05D002847 1.3e-10 70.9 156 33.3
Gohir.A07G083901 Gossypium hirsutum HOM05D003807 ORTHO05D002847 1.3e-10 70.9 174 34.5
Ciclev10012635m.g Citrus clementina HOM05D001711 ORTHO05D002847 1.7e-10 70.5 206 31.1
Gorai.001G093400 Gossypium raimondii HOM05D003807 ORTHO05D002847 1.7e-10 70.5 142 38.7
TAR624G1275 Trochodendron aralioides HOM05D001711 ORTHO05D002847 1.7e-10 70.5 159 34.0
RcHm_v2.0_Chr2g0153531 Rosa chinensis HOM05D003807 ORTHO05D002847 2.9e-10 69.7 85 43.5
Potri.016G017900 Populus trichocarpa HOM05D001711 ORTHO05D002847 3.7e-10 69.3 111 40.5
FAN25G3700 Fragaria x ananassa HOM05D003807 ORTHO05D002847 4.9e-10 68.9 150 32.0
LjContig00081g0007494 Lotus japonicus HOM05D001711 ORTHO05D002847 4.9e-10 68.9 116 36.2
Prupe.3G185800 Prunus persica HOM05D003807 ORTHO05D002847 4.9e-10 68.9 120 36.7
CANSAT35G1226 Cannabis sativa HOM05D003807 ORTHO05D002847 6.4e-10 68.6 159 30.8
Sabra06G0005100 Salix brachista HOM05D001711 ORTHO05D002847 8.3e-10 68.2 162 34.0
Nitab4.5_0002570g0040 Nicotiana tabacum HOM05D001711 ORTHO05D002847 1.1e-09 67.8 209 34.0
DCAR_001286 Daucus carota HOM05D003807 ORTHO05D002847 1.4e-09 67.4 103 39.8
Potri.003G075800 Populus trichocarpa HOM05D003807 ORTHO05D002847 1.4e-09 67.4 185 31.9
Ah.02g120820 Amaranthus hybridus HOM05D001711 ORTHO05D002847 1.9e-09 67.0 146 34.2
Medtr4g094698 Medicago truncatula HOM05D003807 ORTHO05D002847 1.9e-09 67.0 75 48.0
TPR.G8276 Trifolium pratense HOM05D001711 ORTHO05D002847 1.9e-09 67.0 132 37.9
FAN21G0474 Fragaria x ananassa HOM05D003807 ORTHO05D002847 2.4e-09 66.6 102 39.2
arahy.Tifrunner.gnm1.ann1.W19YV6 Arachis hypogaea HOM05D001711 ORTHO05D002847 3.2e-09 66.2 152 30.9
Medtr3g081500 Medicago truncatula HOM05D001711 ORTHO05D002847 3.2e-09 66.2 203 31.0
ECA240G2605 Erigeron canadensis HOM05D003807 ORTHO05D002847 4.1e-09 65.9 199 30.2
FvH4_3g12720 Fragaria vesca HOM05D003807 ORTHO05D002847 4.1e-09 65.9 102 39.2
FvH4_6g39500 Fragaria vesca HOM05D003807 ORTHO05D002847 4.1e-09 65.9 164 32.9
FAN05G3549 Fragaria x ananassa HOM05D003807 ORTHO05D002847 4.1e-09 65.9 87 46.0
FAN09G4092 Fragaria x ananassa HOM05D003807 ORTHO05D002847 4.1e-09 65.9 87 46.0
FAN11G1675 Fragaria x ananassa HOM05D003807 ORTHO05D002847 4.1e-09 65.9 102 39.2
FAN14G1837 Fragaria x ananassa HOM05D003807 ORTHO05D002847 4.1e-09 65.9 164 32.9
Thecc.02G005500 Theobroma cacao HOM05D003807 ORTHO05D002847 5.4e-09 65.5 156 30.1
Aqoxy4G00416 Aquilegia oxysepala HOM05D003807 ORTHO05D002847 7.0e-09 65.1 97 41.2
CAN.G182.24 Capsicum annuum HOM05D001711 ORTHO05D002847 7.0e-09 65.1 74 47.3
Gohir.D11G162700 Gossypium hirsutum HOM05D001711 ORTHO05D002847 7.0e-09 65.1 177 31.6
Gorai.007G173300 Gossypium raimondii HOM05D001711 ORTHO05D002847 7.0e-09 65.1 177 31.6
Peaxi162Scf00393g00062 Petunia axillaris HOM05D001711 ORTHO05D002847 7.0e-09 65.1 153 31.4
Sopen07g022830 Solanum pennellii HOM05D003807 ORTHO05D002847 7.0e-09 65.1 133 34.6
FAN16G0324 Fragaria x ananassa HOM05D003807 ORTHO05D002847 9.2e-09 64.7 102 39.2
Glyma.15G158200 Glycine max HOM05D003807 ORTHO05D002847 1.2e-08 64.3 106 39.6
Phvul.008G290700 Phaseolus vulgaris HOM05D003807 ORTHO05D002847 1.2e-08 64.3 180 32.2
Sabra16G0020100 Salix brachista HOM05D001711 ORTHO05D002847 1.2e-08 64.3 112 39.3
Gohir.A11G155800 Gossypium hirsutum HOM05D001711 ORTHO05D002847 1.6e-08 63.9 230 29.6
Nitab4.5_0000073g0510 Nicotiana tabacum HOM05D001711 ORTHO05D002847 1.6e-08 63.9 136 36.8
Phvul.009G241900 Phaseolus vulgaris HOM05D003807 ORTHO05D002847 1.6e-08 63.9 101 35.6
PGSC0003DMG400011745 Solanum tuberosum HOM05D003807 ORTHO05D002847 1.6e-08 63.9 64 53.1
TWI60G0522 Tripterygium wilfordii HOM05D001711 ORTHO05D002847 1.6e-08 63.9 166 31.3
Cpa.g.sc8.284 Carica papaya HOM05D001711 ORTHO05D002847 2.0e-08 63.5 160 33.1
Glyma.20G064500 Glycine max HOM05D001711 ORTHO05D002847 2.0e-08 63.5 137 34.3
Nitab4.5_0002232g0070 Nicotiana tabacum HOM05D003807 ORTHO05D002847 2.0e-08 63.5 94 39.4
PGR031G0807 Punica granatum HOM05D003807 ORTHO05D002847 2.0e-08 63.5 213 27.7
CANSAT64G0062 Cannabis sativa HOM05D001711 ORTHO05D002847 2.7e-08 63.2 141 35.5
Glyma.09G051900 Glycine max HOM05D003807 ORTHO05D002847 2.7e-08 63.2 105 37.1
Glyma.14G002800 Glycine max HOM05D001711 ORTHO05D002847 2.7e-08 63.2 97 40.2
Lalb_Chr10g0093681 Lupinus albus HOM05D001711 ORTHO05D002847 2.7e-08 63.2 158 30.4
PGR004G1269 Punica granatum HOM05D003807 ORTHO05D002847 2.7e-08 63.2 134 36.6
Sc07g0001950 Simmondsia chinensis HOM05D001711 ORTHO05D002847 2.7e-08 63.2 143 28.7
Sed0015396 Sechium edule HOM05D001711 ORTHO05D002847 3.5e-08 62.8 199 27.6
Solyc07g043250.1 Solanum lycopersicum HOM05D003807 ORTHO05D002847 3.5e-08 62.8 64 53.1
Psat5g106560 Pisum sativum HOM05D001711 ORTHO05D002847 4.6e-08 62.4 126 36.5
Potri.001G158800 Populus trichocarpa HOM05D003807 ORTHO05D002847 4.6e-08 62.4 107 38.3
ClCG11G016820 Citrullus lanatus HOM05D003807 ORTHO05D002847 6.0e-08 62.0 142 37.3
Prupe.4G116000 Prunus persica HOM05D003807 ORTHO05D002847 6.0e-08 62.0 153 30.7
Oeu003076.1 Olea europaea HOM05D001711 ORTHO05D002847 7.8e-08 61.6 106 38.7
Dinv08378 Davidia involucrata HOM05D001711 ORTHO05D002847 1.0e-07 61.2 80 46.2
Duzib132G1175 Durio zibethinus HOM05D003807 ORTHO05D002847 1.0e-07 61.2 131 31.3
Oeu054525.1 Olea europaea HOM05D003807 ORTHO05D002847 1.3e-07 60.8 152 27.6
CiPaw.09G073700 Carya illinoinensis HOM05D003807 ORTHO05D002847 1.7e-07 60.5 105 41.0
MELO3C016231.2 Cucumis melo HOM05D001711 ORTHO05D002847 1.7e-07 60.5 142 33.1
Peaxi162Scf00047g00243 Petunia axillaris HOM05D003807 ORTHO05D002847 2.3e-07 60.1 191 30.9
RcHm_v2.0_Chr5g0020711 Rosa chinensis HOM05D003807 ORTHO05D002847 2.3e-07 60.1 111 36.9
Sabra03G0046300 Salix brachista HOM05D003807 ORTHO05D002847 2.3e-07 60.1 169 33.1
VMungo0540G2275 Vigna mungo HOM05D001711 ORTHO05D002847 2.3e-07 60.1 99 39.4
VMungo1309G0233 Vigna mungo HOM05D003807 ORTHO05D002847 2.3e-07 60.1 110 36.4
AUR62003537 Chenopodium quinoa HOM05D001711 ORTHO05D002847 3.0e-07 59.7 105 35.2
Ca_16315_v3 Cicer arietinum L. HOM05D001711 ORTHO05D002847 3.0e-07 59.7 70 48.6
Nitab4.5_0000170g0400 Nicotiana tabacum HOM05D003807 ORTHO05D002847 3.0e-07 59.7 166 32.5
Os06g0666400 Oryza sativa ssp. japonica HOM05D001711 ORTHO05D002847 3.0e-07 59.7 102 37.3
Sabra01G0133000 Salix brachista HOM05D003807 ORTHO05D002847 3.0e-07 59.7 196 29.1
TWI32G0059 Tripterygium wilfordii HOM05D003807 ORTHO05D002847 3.0e-07 59.7 107 38.3
Haze_13646 Corylus avellana HOM05D001711 ORTHO05D002847 3.9e-07 59.3 109 39.4
Eucgr.K01342 Eucalyptus grandis HOM05D001711 ORTHO05D002847 3.9e-07 59.3 153 34.6
Nn7g38292 Nelumbo nucifera HOM05D001711 ORTHO05D002847 3.9e-07 59.3 145 30.3
AUR62017851 Chenopodium quinoa HOM05D001711 ORTHO05D002847 5.0e-07 58.9 112 34.8
Glyma.13G005100 Glycine max HOM05D001711 ORTHO05D002847 5.0e-07 58.9 96 38.5
Lalb_Chr15g0083801 Lupinus albus HOM05D003807 ORTHO05D002847 5.0e-07 58.9 57 52.6
MSTRG.6598 Avicennia marina HOM05D003807 ORTHO05D002847 6.6e-07 58.5 101 37.6
CiPaw.10G062400 Carya illinoinensis HOM05D003807 ORTHO05D002847 6.6e-07 58.5 142 33.8
Phvul.006G002700 Phaseolus vulgaris HOM05D001711 ORTHO05D002847 6.6e-07 58.5 100 40.0
Duzib248G0332 Durio zibethinus HOM05D003807 ORTHO05D002847 8.6e-07 58.2 164 28.0
Migut.M00092 Erythranthe guttata HOM05D001711 ORTHO05D002847 8.6e-07 58.2 101 37.6
Lalb_Chr04g0247001 Lupinus albus HOM05D003807 ORTHO05D002847 8.6e-07 58.2 41 68.3
Psat1g149760 Pisum sativum HOM05D003807 ORTHO05D002847 8.6e-07 58.2 125 34.4
AL7G40590 Arabidopsis lyrata HOM05D003807 ORTHO05D002847 1.1e-06 57.8 93 36.6
BcaC05g28098 Brassica carinata HOM05D003807 ORTHO05D002847 1.1e-06 57.8 102 38.2
C05p41250 Brassica napus HOM05D003807 ORTHO05D002847 1.1e-06 57.8 102 38.2
BolC5t32867H Brassica oleracea HOM05D003807 ORTHO05D002847 1.1e-06 57.8 102 38.2
Rhsim12G0015000 Rhododendron simsii HOM05D001711 ORTHO05D002847 1.1e-06 57.8 52 57.7
Sp7g13350 Schrenkiella parvula HOM05D003807 ORTHO05D002847 1.1e-06 57.8 93 36.6
Aa31LG8G8720 Aethionema arabicum HOM05D003807 ORTHO05D002847 1.5e-06 57.4 88 40.9
MSTRG.14877 Avicennia marina HOM05D003807 ORTHO05D002847 1.5e-06 57.4 66 42.4
A01p22390 Brassica napus HOM05D003807 ORTHO05D002847 1.5e-06 57.4 142 29.6
BraA05t21543Z Brassica rapa HOM05D003807 ORTHO05D002847 1.5e-06 57.4 102 38.2
CiPaw.10G062300 Carya illinoinensis HOM05D003807 ORTHO05D002847 1.5e-06 57.4 143 35.0
Lj6g0002202 Lotus japonicus HOM05D001711 ORTHO05D002847 1.5e-06 57.4 54 53.7
Oeu052638.1 Olea europaea HOM05D003807 ORTHO05D002847 1.5e-06 57.4 91 35.2
QL11p012767 Quercus lobata HOM05D003807 ORTHO05D002847 1.5e-06 57.4 149 31.5
MSTRG.12273 Avicennia marina HOM05D003807 ORTHO05D002847 1.9e-06 57.0 99 35.4
COL.COLO4_17627 Corchorus olitorius HOM05D003807 ORTHO05D002847 1.9e-06 57.0 98 38.8
Lalb_Chr18g0052151 Lupinus albus HOM05D003807 ORTHO05D002847 1.9e-06 57.0 44 59.1
Zm00001eb233250 Zea mays HOM05D001711 ORTHO05D002847 1.9e-06 57.0 57 47.4
Thhalv10021568m.g Eutrema salsugineum HOM05D003807 ORTHO05D002847 2.5e-06 56.6 64 50.0
Medtr2g035850 Medicago truncatula HOM05D003807 ORTHO05D002847 2.5e-06 56.6 108 38.9
Oeu008729.1 Olea europaea HOM05D003807 ORTHO05D002847 2.5e-06 56.6 94 34.0
CARHR221860 Cardamine hirsuta HOM05D003807 ORTHO05D002847 3.3e-06 56.2 48 58.3
CsaV3_4G032360 Cucumis sativus L. HOM05D003807 ORTHO05D002847 3.3e-06 56.2 114 39.5
Lalb_Chr12g0208981 Lupinus albus HOM05D003807 ORTHO05D002847 3.3e-06 56.2 80 38.8
TPR.G31240 Trifolium pratense HOM05D003807 ORTHO05D002847 3.3e-06 56.2 71 46.5
TPR.G31858 Trifolium pratense HOM05D003807 ORTHO05D002847 3.3e-06 56.2 116 37.1
BcaB04g20540 Brassica carinata HOM05D003807 ORTHO05D002847 4.3e-06 55.8 57 52.6
SalBow3G3892 Salvia bowleyana HOM05D003807 ORTHO05D002847 4.3e-06 55.8 36 72.2
Thecc.02G005300 Theobroma cacao HOM05D003807 ORTHO05D002847 4.3e-06 55.8 166 30.1
AT4G15120 Arabidopsis thaliana HOM05D003807 ORTHO05D002847 5.6e-06 55.5 36 72.2
Dinv16294 Davidia involucrata HOM05D001711 ORTHO05D002211 5.6e-06 55.5 62 48.4
Duzib132G0260 Durio zibethinus HOM05D003807 ORTHO05D002847 5.6e-06 55.5 98 33.7
Glyma.05G133000 Glycine max HOM05D003807 ORTHO05D002847 5.6e-06 55.5 37 67.6
Sed0006784 Sechium edule HOM05D003807 ORTHO05D002847 5.6e-06 55.5 103 36.9
Eucgr.D00026 Eucalyptus grandis HOM05D003807 ORTHO05D002847 7.3e-06 55.1 104 33.7
Oeu046931.1 Olea europaea HOM05D003807 ORTHO05D002847 7.3e-06 55.1 86 39.5
Aa31LG9G2270 Aethionema arabicum HOM05D003807 ORTHO05D002847 9.5e-06 54.7 45 57.8
BcaB06g26318 Brassica carinata HOM05D003807 ORTHO05D002847 9.5e-06 54.7 57 50.9
BcaC09g49150 Brassica carinata HOM05D003807 ORTHO05D002847 9.5e-06 54.7 57 50.9
A01p33000 Brassica napus HOM05D003807 ORTHO05D002847 9.5e-06 54.7 57 50.9
C01p42110 Brassica napus HOM05D003807 ORTHO05D002847 9.5e-06 54.7 57 50.9
BolC1t04173H Brassica oleracea HOM05D003807 ORTHO05D002847 9.5e-06 54.7 57 50.9
BraA01t03420Z Brassica rapa HOM05D003807 ORTHO05D002847 9.5e-06 54.7 57 50.9
Lj1P1147T18 Lonicera japonica HOM05D003807 ORTHO05D002847 9.5e-06 54.7 96 35.4
Sp3g19970 Schrenkiella parvula HOM05D003807 ORTHO05D002847 9.5e-06 54.7 57 50.9
PGSC0003DMG400009442 Solanum tuberosum HOM05D003807 ORTHO05D002847 9.5e-06 54.7 125 32.0


User provided reference genes

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