Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021208 Daucus carota HOM05D003679 ORTHO05D004265 1.3e-35 152.5 75 100.0
DCAR_003511 Daucus carota HOM05D003679 ORTHO05D004265 6.1e-22 107.1 72 73.6
Ca_19809_v3 Cicer arietinum L. HOM05D003679 ORTHO05D004265 1.7e-19 99.0 59 79.7
Actinidia03530 Actinidia chinensis HOM05D003679 ORTHO05D004265 6.3e-19 97.1 72 66.7
Cfa008063 Carpinus fangiana HOM05D003679 ORTHO05D004265 6.3e-19 97.1 59 79.7
GSVIVG01037227001 Vitis vinifera HOM05D003679 ORTHO05D004265 6.3e-19 97.1 72 65.3
Cc10_g16340 Coffea canephora HOM05D003679 ORTHO05D004265 8.2e-19 96.7 73 72.6
Hma1.2p1_0016F.1_g010780 Hydrangea macrophylla HOM05D003679 ORTHO05D004265 8.2e-19 96.7 72 65.3
Rhsim02G0172900 Rhododendron simsii HOM05D003679 ORTHO05D004265 1.1e-18 96.3 58 79.3
CSS0010343 Camellia sinensis var. sinensis HOM05D003679 ORTHO05D004265 1.8e-18 95.5 72 65.3
CSS0038034 Camellia sinensis var. sinensis HOM05D003679 ORTHO05D004265 1.8e-18 95.5 72 65.3
Haze_13962 Corylus avellana HOM05D003679 ORTHO05D004265 1.8e-18 95.5 59 78.0
Dinv22115 Davidia involucrata HOM05D003679 ORTHO05D004265 1.8e-18 95.5 58 79.3
vmacro11031 Vaccinium macrocarpon HOM05D003679 ORTHO05D004265 1.8e-18 95.5 59 78.0
Phvul.011G216200 Phaseolus vulgaris HOM05D003679 ORTHO05D004265 2.4e-18 95.1 59 76.3
Actinidia29376 Actinidia chinensis HOM05D003679 ORTHO05D004265 3.1e-18 94.7 72 65.3
Lalb_Chr19g0131861 Lupinus albus HOM05D003679 ORTHO05D004265 3.1e-18 94.7 59 76.3
MD10G1003500 Malus domestica HOM05D003679 ORTHO05D004265 3.1e-18 94.7 72 65.3
QL09p001735 Quercus lobata HOM05D003679 ORTHO05D004265 3.1e-18 94.7 59 78.0
Manes.02G207300 Manihot esculenta HOM05D003679 ORTHO05D004265 4.1e-18 94.4 72 65.3
CiPaw.03G013700 Carya illinoinensis HOM05D003679 ORTHO05D004265 5.3e-18 94.0 59 76.3
EL10Ac1g01279 Beta vulgaris HOM05D003679 ORTHO05D004265 7.0e-18 93.6 73 64.4
Dinv37407 Davidia involucrata HOM05D003679 ORTHO05D004265 7.0e-18 93.6 58 77.6
Cpa.g.sc21.95 Carica papaya HOM05D003679 ORTHO05D004265 9.1e-18 93.2 59 74.6
Lalb_Chr03g0033781 Lupinus albus HOM05D003679 ORTHO05D004265 9.1e-18 93.2 59 74.6
Ah.05g170420 Amaranthus hybridus HOM05D003679 ORTHO05D004265 1.2e-17 92.8 61 72.1
Prupe.8G006100 Prunus persica HOM05D003679 ORTHO05D004265 1.2e-17 92.8 72 63.9
Sc23g0000050 Simmondsia chinensis HOM05D003679 ORTHO05D004265 1.2e-17 92.8 72 63.9
TPR.G34140 Trifolium pratense HOM05D003679 ORTHO05D004265 1.2e-17 92.8 59 74.6
arahy.Tifrunner.gnm1.ann1.59G37Z Arachis hypogaea HOM05D003679 ORTHO05D004265 1.6e-17 92.4 59 74.6
arahy.Tifrunner.gnm1.ann1.AU4LT2 Arachis hypogaea HOM05D003679 ORTHO05D004265 1.6e-17 92.4 59 74.6
CDE02G0262 Ceratophyllum demersum HOM05D003679 ORTHO05D004265 1.6e-17 92.4 72 62.5
CDE09G1378 Ceratophyllum demersum HOM05D003679 ORTHO05D004265 1.6e-17 92.4 72 62.5
Glyma.09G002400 Glycine max HOM05D003679 ORTHO05D004265 2.0e-17 92.0 59 74.6
Glyma.12G241900 Glycine max HOM05D003679 ORTHO05D004265 2.0e-17 92.0 59 74.6
Sed0026343 Sechium edule HOM05D003679 ORTHO05D004265 2.6e-17 91.7 59 72.9
unitig_37.g13075 Utricularia gibba HOM05D003679 ORTHO05D004265 2.6e-17 91.7 73 65.8
AT1G22870 Arabidopsis thaliana HOM05D003679 ORTHO05D004265 3.5e-17 91.3 59 72.9
BcaB07g32282 Brassica carinata HOM05D003679 ORTHO05D004265 3.5e-17 91.3 59 72.9
Carub.0001s2237 Capsella rubella HOM05D003679 ORTHO05D004265 3.5e-17 91.3 59 72.9
AUR62013388 Chenopodium quinoa HOM05D003679 ORTHO05D004265 3.5e-17 91.3 72 59.7
MELO3C022164.2 Cucumis melo HOM05D003679 ORTHO05D004265 3.5e-17 91.3 59 72.9
Lj3g0002271 Lotus japonicus HOM05D003679 ORTHO05D004265 3.5e-17 91.3 59 72.9
PGR004G0725 Punica granatum HOM05D003679 ORTHO05D004265 3.5e-17 91.3 72 61.1
Sp1g20350 Schrenkiella parvula HOM05D003679 ORTHO05D004265 3.5e-17 91.3 59 72.9
Duzib177G0004 Durio zibethinus HOM05D003679 ORTHO05D004265 4.5e-17 90.9 59 74.6
Gohir.A05G275400 Gossypium hirsutum HOM05D003679 ORTHO05D004265 4.5e-17 90.9 59 74.6
Potri.013G098700 Populus trichocarpa HOM05D003679 ORTHO05D004265 4.5e-17 90.9 60 73.3
Sabra13G0083300 Salix brachista HOM05D003679 ORTHO05D004265 4.5e-17 90.9 60 73.3
Sabra13G0084600 Salix brachista HOM05D003679 ORTHO05D004265 4.5e-17 90.9 60 73.3
Thecc.08G179800 Theobroma cacao HOM05D003679 ORTHO05D004265 4.5e-17 90.9 59 74.6
TAR629G3435 Trochodendron aralioides HOM05D003679 ORTHO05D004265 4.5e-17 90.9 58 74.1
Psat7g228040 Pisum sativum HOM05D003679 ORTHO05D004265 5.9e-17 90.5 59 72.9
THA.LOC104800081 Tarenaya hassleriana HOM05D003679 ORTHO05D004265 5.9e-17 90.5 56 76.8
A07p37690 Brassica napus HOM05D003679 ORTHO05D004265 7.7e-17 90.1 59 71.2
BraA07t31333Z Brassica rapa HOM05D003679 ORTHO05D004265 7.7e-17 90.1 59 71.2
Gohir.D05G277500 Gossypium hirsutum HOM05D003679 ORTHO05D004265 7.7e-17 90.1 59 74.6
Gorai.009G290500 Gossypium raimondii HOM05D003679 ORTHO05D004265 7.7e-17 90.1 59 74.6
MD05G1002800 Malus domestica HOM05D003679 ORTHO05D004265 7.7e-17 90.1 72 62.5
Nitab4.5_0001430g0030 Nicotiana tabacum HOM05D003679 ORTHO05D004265 7.7e-17 90.1 73 68.5
Aqoxy4G00374 Aquilegia oxysepala HOM05D003679 ORTHO05D004265 1.0e-16 89.7 59 72.9
ClCG08G000780 Citrullus lanatus HOM05D003679 ORTHO05D004265 1.0e-16 89.7 59 71.2
COL.COLO4_25139 Corchorus olitorius HOM05D003679 ORTHO05D004265 1.0e-16 89.7 59 72.9
Thhalv10018097m.g Eutrema salsugineum HOM05D003679 ORTHO05D004265 1.0e-16 89.7 59 71.2
MBI07_g03169_MAGBIO Magnolia biondii HOM05D003679 ORTHO05D004265 1.3e-16 89.4 58 74.1
Medtr4g030910 Medicago truncatula HOM05D003679 ORTHO05D004265 1.3e-16 89.4 59 72.9
HPP92_006341 Vanilla planifolia HOM05D003679 ORTHO05D004265 1.3e-16 89.4 58 70.7
CAN.G43.11 Capsicum annuum HOM05D003679 ORTHO05D004265 1.7e-16 89.0 73 67.1
Eucgr.F04075 Eucalyptus grandis HOM05D003679 ORTHO05D004265 1.7e-16 89.0 72 61.1
Gohir.D05G251500 Gossypium hirsutum HOM05D003679 ORTHO05D004265 1.7e-16 89.0 59 74.6
Gorai.009G262900 Gossypium raimondii HOM05D003679 ORTHO05D004265 1.7e-16 89.0 59 74.6
TWI18G1229 Tripterygium wilfordii HOM05D003679 ORTHO05D004265 1.7e-16 89.0 60 71.7
MSTRG.25498 Avicennia marina HOM05D003679 ORTHO05D004265 2.2e-16 88.6 73 63.0
Aa31LG4G9170 Aethionema arabicum HOM05D003679 ORTHO05D004265 2.9e-16 88.2 59 69.5
CsaV3_5G039850 Cucumis sativus L. HOM05D003679 ORTHO05D004265 2.9e-16 88.2 59 71.2
Nn1g04396 Nelumbo nucifera HOM05D003679 ORTHO05D004265 2.9e-16 88.2 58 74.1
SHI16836 Sapria himalayana HOM05D003679 ORTHO05D004265 2.9e-16 88.2 60 70.0
Sp5g26570 Schrenkiella parvula HOM05D003679 ORTHO05D004265 2.9e-16 88.2 59 69.5
Aa31LG7G6860 Aethionema arabicum HOM05D003679 ORTHO05D004265 3.8e-16 87.8 59 71.2
BcaC05g26193 Brassica carinata HOM05D003679 ORTHO05D004265 3.8e-16 87.8 59 71.2
BcaNung06593 Brassica carinata HOM05D003679 ORTHO05D004265 3.8e-16 87.8 59 71.2
A09p41890 Brassica napus HOM05D003679 ORTHO05D004265 3.8e-16 87.8 59 71.2
C05p21960 Brassica napus HOM05D003679 ORTHO05D004265 3.8e-16 87.8 59 71.2
BolC5t30892H Brassica oleracea HOM05D003679 ORTHO05D004265 3.8e-16 87.8 59 71.2
BraA09t39677Z Brassica rapa HOM05D003679 ORTHO05D004265 3.8e-16 87.8 59 71.2
CARHR023220 Cardamine hirsuta HOM05D003679 ORTHO05D004265 3.8e-16 87.8 59 71.2
HanXRQChr10g0298581 Helianthus annuus HOM05D003679 ORTHO05D004265 3.8e-16 87.8 58 75.9
SalBow7G3862 Salvia bowleyana HOM05D003679 ORTHO05D004265 3.8e-16 87.8 60 73.3
PSO063G5029 Papaver somniferum HOM05D003679 ORTHO05D004265 5.0e-16 87.4 59 71.2
PSO782G1226 Papaver somniferum HOM05D003679 ORTHO05D004265 5.0e-16 87.4 59 71.2
C06p45570 Brassica napus HOM05D003679 ORTHO05D004265 6.5e-16 87.0 59 69.5
BolC6t39608H Brassica oleracea HOM05D003679 ORTHO05D004265 6.5e-16 87.0 59 69.5
Atru.chr13.2527 Acer truncatum HOM05D003679 ORTHO05D004265 8.5e-16 86.7 59 69.5
Thhalv10006737m.g Eutrema salsugineum HOM05D003679 ORTHO05D004265 8.5e-16 86.7 59 69.5
Lj9C697G2 Lonicera japonica HOM05D003679 ORTHO05D004265 1.1e-15 86.3 58 72.4
THA.LOC104809755 Tarenaya hassleriana HOM05D003679 ORTHO05D004265 1.1e-15 86.3 59 71.2
SMO361G0595 Selaginella moellendorffii HOM05D003679 ORTHO05D004265 1.5e-15 85.9 64 62.5
SGA_v2.0_scaffold24G10654 Striga asiatica HOM05D003679 ORTHO05D004265 1.5e-15 85.9 60 70.0
VMungo1127G1022 Vigna mungo HOM05D003679 ORTHO05D004265 1.5e-15 85.9 59 69.5
AL2G31070 Arabidopsis lyrata HOM05D003679 ORTHO05D004265 2.5e-15 85.1 59 67.8
AT1G71410 Arabidopsis thaliana HOM05D003679 ORTHO05D004265 2.5e-15 85.1 59 67.8
A02p17340 Brassica napus HOM05D003679 ORTHO05D004265 2.5e-15 85.1 59 66.1
BraA02t06781Z Brassica rapa HOM05D003679 ORTHO05D004265 2.5e-15 85.1 59 66.1
Carub.0002s1826 Capsella rubella HOM05D003679 ORTHO05D004265 2.5e-15 85.1 59 67.8
CARHR291300 Cardamine hirsuta HOM05D003679 ORTHO05D004265 2.5e-15 85.1 59 67.8
Migut.C01386 Erythranthe guttata HOM05D003679 ORTHO05D004265 2.5e-15 85.1 73 61.6
Cc02_g28270 Coffea canephora HOM05D003679 ORTHO05D004265 3.2e-15 84.7 71 69.0
SGA_v2.0_scaffold118G32618 Striga asiatica HOM05D003679 ORTHO05D004265 3.2e-15 84.7 60 66.7
BcaB05g24669 Brassica carinata HOM05D003679 ORTHO05D004265 4.2e-15 84.3 59 66.1
BcaC03g15292 Brassica carinata HOM05D003679 ORTHO05D004265 4.2e-15 84.3 59 66.1
C02p28990 Brassica napus HOM05D003679 ORTHO05D004265 4.2e-15 84.3 59 66.1
BolC2t08949H Brassica oleracea HOM05D003679 ORTHO05D004265 4.2e-15 84.3 59 66.1
Ciclev10018760m.g Citrus clementina HOM05D003679 ORTHO05D004265 4.2e-15 84.3 59 67.8
Lsat_1_v5_gn_1_1441 Lactuca sativa HOM05D003679 ORTHO05D004265 5.5e-15 84.0 58 74.1
Lj7C418G9 Lonicera japonica HOM05D003679 ORTHO05D004265 5.5e-15 84.0 58 69.0
Mapoly0061s0106 Marchantia polymorpha HOM05D003679 ORTHO05D004265 5.5e-15 84.0 60 61.7
SEGI_13301 Sequoiadendron giganteum HOM05D003679 ORTHO05D004265 5.5e-15 84.0 72 56.9
Gohir.A05G249800 Gossypium hirsutum HOM05D003679 ORTHO05D004265 7.2e-15 83.6 56 73.2
Nn1g09907 Nelumbo nucifera HOM05D003679 ORTHO05D004265 7.2e-15 83.6 58 67.2
Gohir.D08G251000 Gossypium hirsutum HOM05D003679 ORTHO05D004265 9.4e-15 83.2 63 68.3
Gorai.004G267700 Gossypium raimondii HOM05D003679 ORTHO05D004265 9.4e-15 83.2 63 68.3
Oeu028634.1 Olea europaea HOM05D003679 ORTHO05D004265 9.4e-15 83.2 73 61.6
TWI12G0838 Tripterygium wilfordii HOM05D003679 ORTHO05D004265 9.4e-15 83.2 60 65.0
Zm00001eb162090 Zea mays HOM05D003679 ORTHO05D004265 9.4e-15 83.2 59 64.4
Zm00001eb358200 Zea mays HOM05D003679 ORTHO05D004265 9.4e-15 83.2 59 64.4
MSTRG.1602 Avicennia marina HOM05D003679 ORTHO05D004265 1.2e-14 82.8 60 68.3
Gohir.A08G230600 Gossypium hirsutum HOM05D003679 ORTHO05D004265 1.2e-14 82.8 62 69.4
Hund03114 Selenicereus undatus HOM05D003679 ORTHO05D004265 1.6e-14 82.4 59 67.8
Oeu028929.2 Olea europaea HOM05D003679 ORTHO05D004265 2.7e-14 81.6 59 69.5
RcHm_v2.0_Chr6g0251091 Rosa chinensis HOM05D003679 ORTHO05D004265 2.7e-14 81.6 56 69.6
CBR_g30330 Chara braunii HOM05D003679 ORTHO05D004265 4.7e-14 80.9 73 52.1
FAN06G3180 Fragaria x ananassa HOM05D003679 ORTHO05D004265 6.1e-14 80.5 56 67.9
FAN06G3813 Fragaria x ananassa HOM05D003679 ORTHO05D004265 6.1e-14 80.5 56 67.9
ATR0602G033 Amborella trichopoda HOM05D003679 ORTHO05D004265 8.0e-14 80.1 60 63.3
FvH4_2g00710 Fragaria vesca HOM05D003679 ORTHO05D004265 1.4e-13 79.3 56 66.1
FAN20G2916 Fragaria x ananassa HOM05D003679 ORTHO05D004265 1.4e-13 79.3 56 66.1
FAN24G0047 Fragaria x ananassa HOM05D003679 ORTHO05D004265 1.4e-13 79.3 56 66.1
FAN27G2038 Fragaria x ananassa HOM05D003679 ORTHO05D004265 1.4e-13 79.3 56 66.1
AUR62038539 Chenopodium quinoa HOM05D003679 ORTHO05D004265 5.2e-13 77.4 52 71.2
ECA247G4018 Erigeron canadensis HOM05D003679 ORTHO05D004265 5.2e-13 77.4 58 65.5
CBR_g22378 Chara braunii HOM05D003679 ORTHO05D004265 2.6e-12 75.1 74 47.3
Pp3c9_3750 Physcomitrium patens HOM05D003679 ORTHO05D004265 2.6e-12 75.1 60 55.0
Peaxi162Scf00078g00824 Petunia axillaris HOM05D003679 ORTHO05D004265 3.5e-09 64.7 77 53.2
Solyc11g042990.2 Solanum lycopersicum HOM05D003679 ORTHO05D004265 4.5e-09 64.3 77 53.2
Sopen11g019340 Solanum pennellii HOM05D003679 ORTHO05D004265 4.5e-09 64.3 77 53.2
Nitab4.5_0000213g0040 Nicotiana tabacum HOM05D003679 ORTHO05D004265 1.0e-08 63.2 77 51.9


User provided reference genes

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