Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 2.4e-140 503.1 253 100.0
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 1.6e-80 304.3 252 63.5
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 2.0e-33 147.9 244 38.9
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 3.5e-30 137.1 249 36.9
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 3.5e-30 137.1 245 37.6
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 5.0e-29 133.3 238 35.3
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 4.2e-28 130.2 243 36.6
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 5.5e-28 129.8 238 38.2
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 2.3e-26 124.4 243 35.0
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 4.0e-26 123.6 243 33.7
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 1.5e-25 121.7 244 33.6
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 2.8e-24 117.5 249 34.9
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 3.1e-23 114.0 249 32.9
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 2.0e-22 111.3 156 41.0
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 6.6e-21 106.3 257 31.5
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 1.1e-20 105.5 240 31.7
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 4.2e-20 103.6 257 32.7
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 5.5e-20 103.2 169 37.9
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 5.5e-20 103.2 246 31.7
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.6e-19 101.7 169 38.5
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 3.6e-19 100.5 169 38.5
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 4.7e-19 100.1 161 38.5
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 6.1e-19 99.8 185 36.2
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 1.4e-18 98.6 156 39.7
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 4.0e-18 97.1 169 36.7
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 5.2e-18 96.7 238 30.7
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 5.2e-18 96.7 238 30.7
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 1.5e-17 95.1 208 33.7
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 2.0e-17 94.7 250 30.8
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 2.0e-17 94.7 267 31.5
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 3.4e-17 94.0 250 29.6
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 1.3e-16 92.0 254 29.5
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 1.7e-16 91.7 269 31.6
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 2.8e-16 90.9 257 31.1
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 3.7e-16 90.5 248 30.2
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 4.9e-16 90.1 256 29.7
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 8.3e-16 89.4 249 30.1
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 4.1e-15 87.0 283 27.6
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 4.1e-15 87.0 282 28.0
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 5.4e-15 86.7 245 31.4
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 7.0e-15 86.3 248 29.4
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 9.2e-15 85.9 255 28.2
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 1.2e-14 85.5 245 31.4
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 1.6e-14 85.1 236 29.2
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 1.6e-14 85.1 244 31.1
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 2.0e-14 84.7 283 27.6
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 3.9e-13 80.5 168 31.5
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 5.0e-13 80.1 295 27.5
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 1.5e-12 78.6 164 35.4
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 5.6e-12 76.6 254 29.1
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 7.3e-12 76.3 242 29.3
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 9.5e-12 75.9 256 32.0
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 1.2e-11 75.5 149 32.9
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 1.2e-11 75.5 289 27.0
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 1.6e-11 75.1 242 27.3
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 2.8e-11 74.3 299 26.8
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 3.6e-11 73.9 253 28.1
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 4.7e-11 73.6 284 26.8
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 2.3e-10 71.2 163 31.9
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 2.3e-10 71.2 163 31.9
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 4.0e-10 70.5 139 36.7
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 4.0e-10 70.5 258 26.4
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 5.2e-10 70.1 168 34.5
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 5.2e-10 70.1 161 31.7
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 6.8e-10 69.7 170 34.1
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 8.9e-10 69.3 167 35.3
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 8.9e-10 69.3 167 29.3
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 1.2e-09 68.9 249 31.7
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 1.2e-09 68.9 187 26.7
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 1.5e-09 68.6 170 34.7
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 2.0e-09 68.2 171 32.7
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 2.0e-09 68.2 171 34.5
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 3.4e-09 67.4 158 36.1
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 3.4e-09 67.4 158 36.1
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 3.4e-09 67.4 162 31.5
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 4.4e-09 67.0 184 32.1
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 5.8e-09 66.6 254 26.4
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 7.5e-09 66.2 170 34.1
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 7.5e-09 66.2 170 34.1
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 2.2e-08 64.7 164 33.5
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 2.9e-08 64.3 168 33.3
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 2.9e-08 64.3 168 33.3
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 8.3e-08 62.8 198 31.8
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 7.0e-07 59.7 162 27.8
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 1.2e-06 58.9 233 27.0
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 1.2e-06 58.9 219 31.5
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 7.8e-06 56.2 247 26.7


User provided reference genes

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