Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 1.2e-253 879.8 602 100.0
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 1.9e-86 324.3 393 46.3
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 4.5e-83 313.2 395 46.1
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 5.5e-81 306.2 390 44.4
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.6e-80 304.7 397 45.1
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 6.1e-80 302.8 392 45.4
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 6.1e-80 302.8 252 63.5
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.7e-74 284.6 397 44.1
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 1.4e-71 275.0 391 40.4
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 7.4e-70 269.2 391 40.4
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 2.5e-65 254.2 395 40.3
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 6.1e-64 249.6 389 40.4
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 1.8e-63 248.1 329 41.6
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 4.0e-63 246.9 383 41.5
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 1.2e-62 245.4 391 38.4
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 1.2e-59 235.3 391 38.1
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 1.3e-58 231.9 391 37.3
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 1.9e-57 228.0 416 35.3
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 1.9e-57 228.0 409 35.9
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 6.1e-56 223.0 393 36.6
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 1.8e-55 221.5 435 36.3
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 3.0e-55 220.7 394 36.5
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 3.0e-55 220.7 427 35.8
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 4.0e-55 220.3 402 36.8
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 4.0e-55 220.3 409 36.4
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 2.6e-54 217.6 429 36.1
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 3.4e-54 217.2 414 37.2
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 4.4e-54 216.9 427 35.8
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 2.4e-52 211.1 427 35.1
SalBow1G8666 Salvia bowleyana HOM05D005385 ORTHO05D006768 7.7e-51 206.1 416 36.1
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 1.0e-50 205.7 415 35.9
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 1.3e-50 205.3 365 37.3
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 2.9e-50 204.1 392 33.9
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 3.8e-50 203.8 395 34.7
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 1.2e-48 198.7 408 34.1
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 1.6e-48 198.4 393 37.7
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 2.1e-48 198.0 398 33.4
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 4.7e-48 196.8 390 33.6
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 6.1e-48 196.4 429 33.3
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 8.0e-48 196.1 483 30.6
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 1.8e-47 194.9 388 31.7
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 3.0e-47 194.1 384 36.2
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 3.0e-47 194.1 405 37.5
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 4.0e-47 193.7 390 33.3
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.5e-46 191.8 475 31.8
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 2.0e-46 191.4 396 34.3
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.0e-46 191.4 477 31.4
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 3.4e-46 190.7 475 31.4
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 5.7e-46 189.9 396 35.1
ClCG02G009040 Citrullus lanatus HOM05D005385 ORTHO05D006768 1.3e-45 188.7 397 33.8
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 2.2e-45 188.0 471 31.0
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 4.9e-45 186.8 475 30.9
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 8.3e-45 186.0 401 34.4
SalBow1G7937 Salvia bowleyana HOM05D005385 ORTHO05D006768 8.3e-45 186.0 417 34.3
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 1.1e-44 185.7 441 32.4
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 1.1e-44 185.7 478 30.3
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 1.8e-44 184.9 398 33.4
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 3.1e-44 184.1 474 30.0
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 4.1e-44 183.7 393 33.6
MELO3C019298.2 Cucumis melo HOM05D005385 ORTHO05D006768 5.4e-44 183.3 400 32.2
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 7.0e-44 183.0 390 36.4
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 7.0e-44 183.0 390 33.3
Sed0009256 Sechium edule HOM05D005385 ORTHO05D006768 2.7e-43 181.0 399 30.8
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 4.5e-43 180.3 435 30.8
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 1.3e-42 178.7 391 32.0
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 6.6e-42 176.4 436 34.4
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 6.6e-42 176.4 380 35.3
PSO339G4227 Papaver somniferum HOM05D005385 ORTHO05D006768 8.6e-42 176.0 402 32.8
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 7.3e-41 172.9 399 31.3
Manes.13G068800 Manihot esculenta HOM05D005385 ORTHO05D006768 1.6e-40 171.8 245 40.4
Lj1A770T48 Lonicera japonica HOM05D005385 ORTHO05D006768 2.1e-40 171.4 283 39.2
PSO384G2490 Papaver somniferum HOM05D005385 ORTHO05D006768 2.8e-40 171.0 401 32.4
Aqoxy5G00128 Aquilegia oxysepala HOM05D005385 ORTHO05D006768 3.6e-40 170.6 414 32.9
MBI14_g48057_MAGBIO Magnolia biondii HOM05D005385 ORTHO05D006768 6.1e-40 169.9 360 35.3
Duzib211G0060 Durio zibethinus HOM05D005385 ORTHO05D006768 1.8e-39 168.3 398 32.9
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 5.2e-39 166.8 498 29.5
Nn8g40525 Nelumbo nucifera HOM05D005385 ORTHO05D006768 2.0e-38 164.9 244 37.7
Sc21g0001240 Simmondsia chinensis HOM05D005385 ORTHO05D006768 2.6e-38 164.5 408 32.8
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 6.4e-37 159.8 400 32.5
Peaxi162Scf00007g00224 Petunia axillaris HOM05D005385 ORTHO05D006768 1.1e-36 159.1 483 29.8
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 1.8e-36 158.3 384 34.4
Duzib133G0129 Durio zibethinus HOM05D005385 ORTHO05D006768 1.2e-35 155.6 393 33.1
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 2.0e-35 154.8 545 26.8
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 7.8e-35 152.9 518 29.0
SGA_v2.0_scaffold49G18342 Striga asiatica HOM05D005385 ORTHO05D006768 2.3e-34 151.4 261 37.9
arahy.Tifrunner.gnm1.ann1.1871C9 Arachis hypogaea HOM05D005385 ORTHO05D006768 6.6e-34 149.8 324 34.3
arahy.Tifrunner.gnm1.ann1.N42FWL Arachis hypogaea HOM05D005385 ORTHO05D006768 8.6e-34 149.4 311 35.4
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 1.9e-33 148.3 483 28.4
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 2.1e-32 144.8 525 28.8
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 2.1e-32 144.8 525 28.8
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 3.6e-32 144.1 519 26.4
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.1e-31 142.5 343 30.6
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 2.3e-31 141.4 512 26.8
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 3.1e-31 141.0 490 27.3
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 6.8e-31 139.8 517 26.5
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 6.8e-31 139.8 543 26.7
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 6.8e-31 139.8 457 28.4
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 8.9e-31 139.4 542 25.8
unitig_52.g17609 Utricularia gibba HOM05D005385 ORTHO05D006768 2.6e-30 137.9 379 31.1
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 4.4e-30 137.1 530 25.3
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 2.2e-29 134.8 518 25.9
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 8.3e-29 132.9 230 37.0
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 7.0e-28 129.8 598 24.4
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 9.2e-28 129.4 525 27.2
Ah.03g136860 Amaranthus hybridus HOM05D005385 ORTHO05D006768 3.5e-27 127.5 391 30.4
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 3.5e-27 127.5 524 26.7
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 1.0e-26 125.9 158 44.9
AUR62043283 Chenopodium quinoa HOM05D005385 ORTHO05D006768 5.0e-26 123.6 394 29.4
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 6.6e-26 123.2 544 26.7
MD17G1100200 Malus domestica HOM05D005385 ORTHO05D006768 8.6e-26 122.9 308 30.5
EL10Ac6g14187 Beta vulgaris HOM05D005385 ORTHO05D006768 3.3e-25 120.9 408 28.7
AUR62043954 Chenopodium quinoa HOM05D005385 ORTHO05D006768 5.6e-25 120.2 389 29.0
Sc06g0009590 Simmondsia chinensis HOM05D005385 ORTHO05D006768 4.0e-23 114.0 151 39.1
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.6e-19 102.1 248 32.3
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 1.6e-19 102.1 248 32.3
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 6.0e-19 100.1 301 29.9
VMungo0251G1899 Vigna mungo HOM05D005385 ORTHO05D006768 1.1e-17 95.9 112 42.9
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 1.5e-17 95.5 328 28.4
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 7.3e-17 93.2 166 34.9
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 4.0e-15 87.4 156 35.9
Lj3P615T7 Lonicera japonica HOM05D005385 ORTHO05D006768 2.6e-14 84.7 107 46.7
CDE02G3131 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 3.4e-14 84.3 340 27.9
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.7e-13 82.0 163 35.6
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 1.7e-13 82.0 163 35.6
Lj1P773T39 Lonicera japonica HOM05D005385 ORTHO05D006768 8.4e-13 79.7 109 45.0
CDE05G0211 Ceratophyllum demersum HOM05D005385 ORTHO05D006768 1.2e-11 75.9 328 25.0


User provided reference genes

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