Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 9.2e-22 105.9 51 100.0
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 1.2e-16 89.0 48 79.2
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 1.4e-14 82.0 48 77.1
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 2.4e-14 81.3 52 73.1
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 2.4e-14 81.3 52 73.1
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 3.2e-14 80.9 45 77.8
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 4.2e-14 80.5 46 71.7
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 9.2e-14 79.3 47 70.2
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 9.2e-14 79.3 55 63.6
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 9.2e-14 79.3 58 63.8
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 9.2e-14 79.3 48 70.8
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 1.6e-13 78.6 47 70.2
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 1.6e-13 78.6 46 71.7
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 1.6e-13 78.6 40 80.0
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 2.1e-13 78.2 47 68.1
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 2.1e-13 78.2 47 68.1
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 2.1e-13 78.2 47 68.1
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 2.1e-13 78.2 47 68.1
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 2.1e-13 78.2 43 76.7
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 2.1e-13 78.2 39 87.2
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 2.7e-13 77.8 43 76.7
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 2.7e-13 77.8 42 73.8
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 2.7e-13 77.8 48 72.9
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 3.5e-13 77.4 51 66.7
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 3.5e-13 77.4 44 70.5
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 3.5e-13 77.4 39 84.6
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 4.6e-13 77.0 44 72.7
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 6.0e-13 76.6 47 68.1
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 6.0e-13 76.6 47 68.1
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 6.0e-13 76.6 47 68.1
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 6.0e-13 76.6 48 70.8
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 6.0e-13 76.6 39 82.1
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 7.8e-13 76.3 40 77.5
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 7.8e-13 76.3 40 77.5
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 7.8e-13 76.3 45 73.3
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 7.8e-13 76.3 40 75.0
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 7.8e-13 76.3 40 75.0
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 7.8e-13 76.3 40 75.0
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 1.0e-12 75.9 57 59.6
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 1.0e-12 75.9 43 72.1
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 1.7e-12 75.1 47 66.0
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 1.7e-12 75.1 47 66.0
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 2.3e-12 74.7 40 77.5
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 2.3e-12 74.7 51 64.7
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 2.3e-12 74.7 46 65.2
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 2.3e-12 74.7 54 61.1
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 2.3e-12 74.7 43 72.1
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 2.3e-12 74.7 44 72.7
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 2.3e-12 74.7 43 72.1
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 2.3e-12 74.7 52 65.4
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 3.0e-12 74.3 47 63.8
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 3.0e-12 74.3 47 66.0
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 3.9e-12 73.9 47 68.1
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 3.9e-12 73.9 54 63.0
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 3.9e-12 73.9 53 64.2
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 3.9e-12 73.9 53 64.2
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 5.1e-12 73.6 54 64.8
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 5.1e-12 73.6 41 73.2
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 5.1e-12 73.6 46 67.4
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 6.6e-12 73.2 55 61.8
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 6.6e-12 73.2 50 64.0
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 6.6e-12 73.2 47 61.7
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 8.7e-12 72.8 39 76.9
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 8.7e-12 72.8 47 63.8
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 8.7e-12 72.8 47 63.8
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 8.7e-12 72.8 40 75.0
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 8.7e-12 72.8 46 60.9
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 1.1e-11 72.4 47 61.7
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 1.1e-11 72.4 47 66.0
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 1.1e-11 72.4 59 57.6
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 1.1e-11 72.4 50 66.0
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 1.5e-11 72.0 40 70.0
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 1.5e-11 72.0 42 66.7
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 1.5e-11 72.0 42 73.8
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 1.5e-11 72.0 39 71.8
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 1.5e-11 72.0 39 71.8
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 1.9e-11 71.6 58 56.9
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 1.9e-11 71.6 54 63.0
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 1.9e-11 71.6 38 76.3
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 2.5e-11 71.2 38 76.3
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 2.5e-11 71.2 38 76.3
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 2.5e-11 71.2 53 58.5
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 2.5e-11 71.2 39 71.8
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 2.5e-11 71.2 48 68.8
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 3.3e-11 70.9 56 58.9
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 3.3e-11 70.9 56 60.7
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 3.3e-11 70.9 48 56.2
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 3.3e-11 70.9 46 58.7
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 4.3e-11 70.5 54 61.1
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 4.3e-11 70.5 48 68.8
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 5.6e-11 70.1 47 57.4
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 5.6e-11 70.1 46 60.9
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 7.3e-11 69.7 48 60.4
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 1.3e-10 68.9 39 74.4
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 1.6e-10 68.6 48 58.3
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 2.1e-10 68.2 54 55.6
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 2.1e-10 68.2 43 58.1
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 2.1e-10 68.2 52 55.8
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 2.8e-10 67.8 54 55.6
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 3.6e-10 67.4 53 56.6
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 4.8e-10 67.0 40 62.5
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 4.8e-10 67.0 40 60.0
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 4.8e-10 67.0 47 57.4
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 8.1e-10 66.2 54 57.4
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 8.1e-10 66.2 47 53.2
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 8.1e-10 66.2 40 60.0
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 1.1e-09 65.9 40 70.0
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 1.4e-09 65.5 41 61.0
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 1.4e-09 65.5 41 61.0
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 1.4e-09 65.5 58 50.0
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 1.4e-09 65.5 47 61.7
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 1.4e-09 65.5 41 68.3
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 2.4e-09 64.7 42 57.1
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 2.4e-09 64.7 47 55.3
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 3.1e-09 64.3 39 71.8
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 4.0e-09 63.9 45 51.1
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 4.0e-09 63.9 42 64.3
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 5.3e-09 63.5 52 53.8
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 6.9e-09 63.2 47 59.6
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 6.9e-09 63.2 34 73.5
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 1.5e-08 62.0 40 60.0
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 4.4e-08 60.5 46 52.2
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 7.6e-08 59.7 39 61.5
BcaB05g25217 Brassica carinata HOM05D006125 ORTHO05D007404 9.9e-08 59.3 43 60.5
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 2.9e-07 57.8 31 80.6
Potri.004G051201 Populus trichocarpa HOM05D006125 ORTHO05D007404 4.9e-07 57.0 51 51.0


User provided reference genes

Program Settings