Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 2.0e-48 195.3 90 100.0
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 3.5e-40 167.9 89 83.1
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 5.6e-38 160.6 92 76.1
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 1.4e-36 156.0 124 62.1
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 6.8e-36 153.7 124 60.5
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 6.8e-36 153.7 124 62.1
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 8.9e-36 153.3 124 62.1
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 1.5e-35 152.5 124 62.1
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 1.5e-35 152.5 126 62.7
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 1.5e-35 152.5 124 62.1
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 3.4e-35 151.4 124 60.5
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 3.4e-35 151.4 124 61.3
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 3.4e-35 151.4 124 61.3
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 4.4e-35 151.0 124 61.3
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 4.4e-35 151.0 118 62.7
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 4.4e-35 151.0 118 62.7
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 7.5e-35 150.2 124 60.5
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 9.8e-35 149.8 124 60.5
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 9.8e-35 149.8 124 60.5
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 9.8e-35 149.8 124 60.5
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 1.3e-34 149.4 124 59.7
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 1.3e-34 149.4 124 60.5
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 1.3e-34 149.4 124 61.3
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 1.3e-34 149.4 124 61.3
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 1.7e-34 149.1 126 60.3
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 1.7e-34 149.1 126 60.3
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 1.7e-34 149.1 126 60.3
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 1.7e-34 149.1 126 60.3
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 1.7e-34 149.1 126 60.3
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 1.7e-34 149.1 126 60.3
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 2.2e-34 148.7 124 61.3
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 2.2e-34 148.7 124 59.7
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 2.2e-34 148.7 120 61.7
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 2.2e-34 148.7 120 61.7
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 2.2e-34 148.7 124 59.7
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 2.2e-34 148.7 120 61.7
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 2.9e-34 148.3 124 60.5
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 2.9e-34 148.3 124 59.7
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 2.9e-34 148.3 124 59.7
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 2.9e-34 148.3 126 59.5
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 2.9e-34 148.3 126 59.5
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 2.9e-34 148.3 124 59.7
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 2.9e-34 148.3 124 59.7
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 2.9e-34 148.3 124 59.7
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 3.7e-34 147.9 122 59.8
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 3.7e-34 147.9 124 58.9
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 3.7e-34 147.9 124 59.7
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 3.7e-34 147.9 124 58.9
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 4.9e-34 147.5 120 61.7
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 4.9e-34 147.5 120 61.7
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 4.9e-34 147.5 120 61.7
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 4.9e-34 147.5 118 61.0
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 4.9e-34 147.5 124 58.9
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 6.4e-34 147.1 120 60.8
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 6.4e-34 147.1 120 60.8
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 6.4e-34 147.1 120 60.8
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 6.4e-34 147.1 124 58.9
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 6.4e-34 147.1 124 59.7
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 8.3e-34 146.7 118 60.2
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 8.3e-34 146.7 124 58.9
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.1e-33 146.4 118 61.0
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.1e-33 146.4 124 58.9
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.1e-33 146.4 124 57.3
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 1.1e-33 146.4 124 58.9
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 1.1e-33 146.4 124 57.3
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 1.1e-33 146.4 118 60.2
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 1.4e-33 146.0 118 60.2
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 1.4e-33 146.0 118 61.0
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.4e-33 146.0 118 61.0
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.4e-33 146.0 118 61.0
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 1.4e-33 146.0 124 57.3
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 1.4e-33 146.0 118 61.0
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 1.4e-33 146.0 118 61.9
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 1.4e-33 146.0 124 58.9
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 1.9e-33 145.6 124 58.1
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 1.9e-33 145.6 118 61.0
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 1.9e-33 145.6 118 61.0
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 1.9e-33 145.6 124 58.1
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 2.4e-33 145.2 118 59.3
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.4e-33 145.2 118 60.2
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.4e-33 145.2 118 60.2
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 2.4e-33 145.2 118 60.2
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 2.4e-33 145.2 118 59.3
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 3.2e-33 144.8 118 60.2
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 3.2e-33 144.8 124 58.1
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 4.1e-33 144.4 124 59.7
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 4.1e-33 144.4 124 58.1
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 4.1e-33 144.4 124 59.7
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 4.1e-33 144.4 124 59.7
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 4.1e-33 144.4 124 58.1
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 4.1e-33 144.4 124 58.9
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 5.4e-33 144.1 120 60.0
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 5.4e-33 144.1 124 57.3
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 7.0e-33 143.7 124 58.9
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 9.2e-33 143.3 124 57.3
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.2e-32 142.9 118 60.2
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 1.2e-32 142.9 120 58.3
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 1.6e-32 142.5 120 59.2
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 1.6e-32 142.5 120 59.2
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 1.6e-32 142.5 118 57.6
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 1.6e-32 142.5 124 57.3
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 1.6e-32 142.5 124 58.9
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 1.6e-32 142.5 124 58.9
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 2.1e-32 142.1 124 58.9
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 2.1e-32 142.1 118 58.5
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 2.7e-32 141.7 126 57.1
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 1.0e-31 139.8 119 57.1
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 1.3e-31 139.4 126 55.6
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 1.7e-31 139.0 169 46.2
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 1.7e-31 139.0 118 55.9
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 2.3e-31 138.7 118 57.6
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 6.6e-31 137.1 119 56.3
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 2.5e-30 135.2 118 58.5
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 3.3e-30 134.8 124 54.8
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 5.6e-30 134.0 143 51.0
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 9.5e-30 133.3 126 54.8
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 2.8e-29 131.7 124 54.0
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 8.1e-29 130.2 124 52.4
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 4.0e-28 127.9 129 51.2
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 5.2e-28 127.5 117 53.8
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 4.4e-27 124.4 149 46.3
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 3.7e-26 121.3 112 54.5
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 4.9e-26 120.9 118 54.2
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 6.4e-26 120.6 107 56.1
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 4.1e-25 117.9 106 55.7
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 5.4e-25 117.5 110 55.5
Ah.01g002230 Amaranthus hybridus HOM05D004304 ORTHO05D005229 2.2e-18 95.5 46 84.8
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 8.4e-18 93.6 47 87.2
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 8.4e-18 93.6 47 87.2
Hund21536 Selenicereus undatus HOM05D004304 ORTHO05D005229 1.4e-17 92.8 47 85.1
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 1.9e-17 92.4 47 85.1
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 5.4e-17 90.9 44 84.1
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 7.1e-17 90.5 47 83.0
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 9.2e-17 90.1 47 83.0
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 1.2e-16 89.7 47 85.1
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 1.6e-16 89.4 53 71.7
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 2.7e-16 88.6 47 83.0
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 4.6e-16 87.8 41 90.2
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 6.0e-16 87.4 41 90.2
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 6.0e-16 87.4 41 90.2
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 6.0e-16 87.4 41 90.2
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 1.0e-15 86.7 47 76.6
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 1.3e-15 86.3 41 87.8
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 1.7e-15 85.9 47 80.9
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 1.7e-15 85.9 47 80.9
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 2.3e-15 85.5 117 44.4
Nn1g03242 Nelumbo nucifera HOM05D004304 ORTHO05D005229 2.3e-15 85.5 89 52.8
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 2.3e-15 85.5 47 78.7
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 8.7e-15 83.6 44 81.8
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 1.1e-14 83.2 43 83.7
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 1.9e-14 82.4 44 79.5
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 7.3e-14 80.5 44 79.5
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 7.3e-14 80.5 55 67.3
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 2.8e-13 78.6 44 77.3
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 4.7e-13 77.8 41 75.6
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 6.2e-13 77.4 41 75.6
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.1e-12 76.6 44 75.0
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 3.1e-12 75.1 40 77.5
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 6.9e-12 73.9 75 50.7
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 9.0e-12 73.6 83 48.2
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 9.0e-12 73.6 83 48.2
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 2.6e-11 72.0 41 65.9
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 6.0e-08 60.8 29 86.2
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.1e-06 56.6 43 55.8
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 1.5e-06 56.2 41 56.1


User provided reference genes

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