Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021101 Daucus carota HOM05D006200 ORTHO05D007569 6.2e-41 170.2 80 100.0
MSTRG.14921 Avicennia marina HOM05D006200 ORTHO05D007569 4.6e-36 154.1 79 88.6
Prupe.3G200400 Prunus persica HOM05D006200 ORTHO05D007569 6.7e-35 150.2 79 86.1
Phvul.008G213600 Phaseolus vulgaris HOM05D006200 ORTHO05D007569 2.5e-34 148.3 79 83.5
vmacro09406 Vaccinium macrocarpon HOM05D006200 ORTHO05D007569 2.5e-34 148.3 79 86.1
Rhsim04G0037800 Rhododendron simsii HOM05D006200 ORTHO05D007569 3.3e-34 147.9 79 84.8
TAR626G0047 Trochodendron aralioides HOM05D006200 ORTHO05D007569 3.3e-34 147.9 79 83.5
Glyma.14G048700 Glycine max HOM05D006200 ORTHO05D007569 5.7e-34 147.1 79 82.3
Hma1.2p1_2053F.1_g312740 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 7.4e-34 146.7 79 83.5
CSS0021565 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 9.7e-34 146.4 79 82.3
Dinv05360 Davidia involucrata HOM05D006200 ORTHO05D007569 9.7e-34 146.4 79 83.5
CAN.G1036.6 Capsicum annuum HOM05D006200 ORTHO05D007569 1.3e-33 146.0 79 83.5
MD17G1114500 Malus domestica HOM05D006200 ORTHO05D007569 1.6e-33 145.6 79 83.5
Nn1g07469 Nelumbo nucifera HOM05D006200 ORTHO05D007569 1.6e-33 145.6 79 82.3
Nitab4.5_0001774g0080 Nicotiana tabacum HOM05D006200 ORTHO05D007569 2.2e-33 145.2 79 82.3
Glyma.02G268700 Glycine max HOM05D006200 ORTHO05D007569 2.8e-33 144.8 79 81.0
CDE07G1212 Ceratophyllum demersum HOM05D006200 ORTHO05D007569 3.7e-33 144.4 79 81.0
arahy.Tifrunner.gnm1.ann1.HJ95Y2 Arachis hypogaea HOM05D006200 ORTHO05D007569 4.8e-33 144.1 80 82.5
Medtr5g085420 Medicago truncatula HOM05D006200 ORTHO05D007569 4.8e-33 144.1 79 82.3
arahy.Tifrunner.gnm1.ann1.GBED9Y Arachis hypogaea HOM05D006200 ORTHO05D007569 6.3e-33 143.7 79 82.3
Hma1.2p1_0545F.1_g176060 Hydrangea macrophylla HOM05D006200 ORTHO05D007569 6.3e-33 143.7 79 81.0
Actinidia09782 Actinidia chinensis HOM05D006200 ORTHO05D007569 8.2e-33 143.3 79 81.0
Cc02_g04700 Coffea canephora HOM05D006200 ORTHO05D007569 8.2e-33 143.3 79 82.3
Haze_12649 Corylus avellana HOM05D006200 ORTHO05D007569 8.2e-33 143.3 79 82.3
Migut.M00041 Erythranthe guttata HOM05D006200 ORTHO05D007569 8.2e-33 143.3 79 79.7
TPR.G25628 Trifolium pratense HOM05D006200 ORTHO05D007569 8.2e-33 143.3 79 81.0
QL08p028355 Quercus lobata HOM05D006200 ORTHO05D007569 1.1e-32 142.9 79 81.0
MD09G1123700 Malus domestica HOM05D006200 ORTHO05D007569 1.4e-32 142.5 79 82.3
Oeu040457.1 Olea europaea HOM05D006200 ORTHO05D007569 1.4e-32 142.5 79 82.3
PSO675G7132 Papaver somniferum HOM05D006200 ORTHO05D007569 1.4e-32 142.5 79 79.7
Potri.014G164500 Populus trichocarpa HOM05D006200 ORTHO05D007569 1.8e-32 142.1 79 79.7
Rhsim02G0017500 Rhododendron simsii HOM05D006200 ORTHO05D007569 1.8e-32 142.1 78 82.1
PGSC0003DMG400006126 Solanum tuberosum HOM05D006200 ORTHO05D007569 1.8e-32 142.1 79 78.5
TWI36G1668 Tripterygium wilfordii HOM05D006200 ORTHO05D007569 2.4e-32 141.7 79 78.5
Atru.chr6.3355 Acer truncatum HOM05D006200 ORTHO05D007569 3.1e-32 141.4 79 79.7
CiPaw.04G196600 Carya illinoinensis HOM05D006200 ORTHO05D007569 3.1e-32 141.4 79 79.7
LjContig00029g0002447 Lotus japonicus HOM05D006200 ORTHO05D007569 3.1e-32 141.4 79 78.5
SalBow7G0450 Salvia bowleyana HOM05D006200 ORTHO05D007569 3.1e-32 141.4 79 78.5
SGA_v2.0_scaffold181G39681 Striga asiatica HOM05D006200 ORTHO05D007569 3.1e-32 141.4 79 81.0
HPP92_012226 Vanilla planifolia HOM05D006200 ORTHO05D007569 4.1e-32 141.0 79 81.0
Cc05_g02100 Coffea canephora HOM05D006200 ORTHO05D007569 5.3e-32 140.6 79 81.0
PSO541G4622 Papaver somniferum HOM05D006200 ORTHO05D007569 5.3e-32 140.6 79 79.7
Psat2g026360 Pisum sativum HOM05D006200 ORTHO05D007569 5.3e-32 140.6 79 79.7
ATR0624G019 Amborella trichopoda HOM05D006200 ORTHO05D007569 9.0e-32 139.8 79 78.5
AL3G42530 Arabidopsis lyrata HOM05D006200 ORTHO05D007569 9.0e-32 139.8 79 81.0
Carub.0003s2650 Capsella rubella HOM05D006200 ORTHO05D007569 9.0e-32 139.8 79 81.0
BcaC06g35887 Brassica carinata HOM05D006200 ORTHO05D007569 1.2e-31 139.4 79 81.0
C07p10040 Brassica napus HOM05D006200 ORTHO05D007569 1.2e-31 139.4 79 81.0
BolC7t41451H Brassica oleracea HOM05D006200 ORTHO05D007569 1.2e-31 139.4 79 81.0
BraA07t28456Z Brassica rapa HOM05D006200 ORTHO05D007569 1.2e-31 139.4 79 81.0
Cfa014235 Carpinus fangiana HOM05D000160 ORTHO05D000496 1.2e-31 139.4 79 82.3
Thhalv10002727m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.2e-31 139.4 79 81.0
Sp3g23500 Schrenkiella parvula HOM05D006200 ORTHO05D007569 1.2e-31 139.4 79 81.0
BcaB06g26789 Brassica carinata HOM05D006200 ORTHO05D007569 1.5e-31 139.0 79 79.7
Aqoxy4G02230 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 2.0e-31 138.7 79 79.7
AT2G04900 Arabidopsis thaliana HOM05D006200 ORTHO05D007569 2.0e-31 138.7 79 79.7
A07p06630 Brassica napus HOM05D006200 ORTHO05D007569 2.0e-31 138.7 79 81.0
Manes.13G063700 Manihot esculenta HOM05D006200 ORTHO05D007569 2.0e-31 138.7 79 78.5
THA.LOC104815354 Tarenaya hassleriana HOM05D006200 ORTHO05D007569 2.0e-31 138.7 79 79.7
Sopen07g024150 Solanum pennellii HOM05D006200 ORTHO05D007569 2.6e-31 138.3 79 77.2
HanXRQChr10g0306841 Helianthus annuus HOM05D006200 ORTHO05D007569 3.4e-31 137.9 79 79.7
Peaxi162Scf00776g00024 Petunia axillaris HOM05D006200 ORTHO05D007569 3.4e-31 137.9 79 79.7
Solyc07g047700.4 Solanum lycopersicum HOM05D006200 ORTHO05D007569 3.4e-31 137.9 79 75.9
Ciclev10017136m.g Citrus clementina HOM05D006200 ORTHO05D007569 5.9e-31 137.1 79 78.5
FvH4_6g40890 Fragaria vesca HOM05D006200 ORTHO05D007569 5.9e-31 137.1 79 79.7
Lalb_Chr04g0250001 Lupinus albus HOM05D006200 ORTHO05D007569 7.7e-31 136.7 79 77.2
Lsat_1_v5_gn_5_121761 Lactuca sativa HOM05D006200 ORTHO05D007569 1.0e-30 136.3 79 77.2
FAN02G1931 Fragaria x ananassa HOM05D006200 ORTHO05D007569 1.7e-30 135.6 79 78.5
CARHR102920 Cardamine hirsuta HOM05D006200 ORTHO05D007569 3.8e-30 134.4 79 78.5
ClCG02G002790 Citrullus lanatus HOM05D006200 ORTHO05D007569 3.8e-30 134.4 79 77.2
RcHm_v2.0_Chr2g0156461 Rosa chinensis HOM05D006200 ORTHO05D007569 5.0e-30 134.0 79 78.5
Os03g0751000 Oryza sativa ssp. japonica HOM05D006200 ORTHO05D007569 1.1e-29 132.9 78 74.4
CANSAT64G0383 Cannabis sativa HOM05D006200 ORTHO05D007569 1.9e-29 132.1 79 72.2
Zm00001eb057520 Zea mays HOM05D006200 ORTHO05D007569 1.9e-29 132.1 78 73.1
SMO356G0472 Selaginella moellendorffii HOM05D006200 ORTHO05D007569 4.2e-29 131.0 75 76.0
Sed0007295 Sechium edule HOM05D006200 ORTHO05D007569 7.2e-29 130.2 79 74.7
Sed0012997 Sechium edule HOM05D006200 ORTHO05D007569 1.6e-28 129.0 77 76.6
SEGI_07661 Sequoiadendron giganteum HOM05D006200 ORTHO05D007569 1.6e-28 129.0 79 73.4
MELO3C024201.2 Cucumis melo HOM05D006200 ORTHO05D007569 2.7e-28 128.3 84 73.8
Cpa.g.sc136.18 Carica papaya HOM05D006200 ORTHO05D007569 3.6e-28 127.9 79 73.4
Thecc.01G190500 Theobroma cacao HOM05D006200 ORTHO05D007569 4.6e-28 127.5 79 73.4
FAN09G2038 Fragaria x ananassa HOM05D006200 ORTHO05D007569 6.1e-28 127.1 94 67.0
Aa31sc107G30 Aethionema arabicum HOM05D006200 ORTHO05D007569 1.0e-27 126.3 110 59.1
COL.COLO4_33018 Corchorus olitorius HOM05D006200 ORTHO05D007569 1.4e-27 125.9 79 70.9
FAN05G3226 Fragaria x ananassa HOM05D006200 ORTHO05D007569 1.8e-27 125.6 94 66.0
FAN14G5749 Fragaria x ananassa HOM05D006200 ORTHO05D007569 1.8e-27 125.6 94 66.0
CSS0018696 Camellia sinensis var. sinensis HOM05D006200 ORTHO05D007569 3.0e-27 124.8 67 85.1
Lj8A134G80 Lonicera japonica HOM05D006200 ORTHO05D007569 3.9e-27 124.4 65 87.7
Manes.12G061800 Manihot esculenta HOM05D006200 ORTHO05D007569 3.9e-27 124.4 79 72.2
Gohir.A07G167000 Gossypium hirsutum HOM05D006200 ORTHO05D007569 4.3e-26 120.9 79 68.4
Gohir.D07G172300 Gossypium hirsutum HOM05D006200 ORTHO05D007569 4.3e-26 120.9 79 68.4
Gorai.001G192600 Gossypium raimondii HOM05D006200 ORTHO05D007569 4.3e-26 120.9 79 68.4
Sabra14G0125300 Salix brachista HOM05D006200 ORTHO05D007569 2.8e-25 118.2 106 54.7
Duzib138G0810 Durio zibethinus HOM05D006200 ORTHO05D007569 3.7e-25 117.9 79 64.6
GSVIVG01030518001 Vitis vinifera HOM05D006200 ORTHO05D007569 4.8e-25 117.5 74 68.9
GSVIVG01030523001 Vitis vinifera HOM05D006200 ORTHO05D007569 6.3e-25 117.1 74 68.9
Zm00001eb181090 Zea mays HOM05D006200 ORTHO05D007569 6.3e-25 117.1 77 67.5
ECA234G3013 Erigeron canadensis HOM05D006200 ORTHO05D007569 1.4e-24 115.9 65 81.5
Thhalv10009367m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 5.3e-24 114.0 64 79.7
Thhalv10016039m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 9.1e-24 113.2 64 78.1
PGR042G1757 Punica granatum HOM05D006200 ORTHO05D007569 9.1e-24 113.2 64 79.7
Thhalv10023849m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.5e-23 112.5 64 78.1
Eucgr.A01040 Eucalyptus grandis HOM05D006200 ORTHO05D007569 4.5e-23 110.9 65 75.4
Thhalv10027363m.g Eutrema salsugineum HOM05D006200 ORTHO05D007569 1.3e-22 109.4 64 76.6
SHI10134 Sapria himalayana HOM05D006200 ORTHO05D007569 1.3e-22 109.4 82 61.0
AagrBONN_evm.TU.Sc2ySwM_368.977 Anthoceros agrestis HOM05D006200 ORTHO05D007569 1.7e-22 109.0 64 67.2
AUR62015021 Chenopodium quinoa HOM05D006200 ORTHO05D007569 2.9e-22 108.2 64 71.9
MBI16_g28733_MAGBIO Magnolia biondii HOM05D006200 ORTHO05D007569 5.0e-22 107.5 66 74.2
Mapoly0007s0279 Marchantia polymorpha HOM05D006200 ORTHO05D007569 5.0e-22 107.5 75 65.3
Zm00001eb025380 Zea mays HOM05D006200 ORTHO05D007569 6.5e-22 107.1 99 53.5
AUR62029092 Chenopodium quinoa HOM05D006200 ORTHO05D007569 1.2e-20 102.8 63 71.4
Pp3c6_18880 Physcomitrium patens HOM05D006200 ORTHO05D007569 2.7e-20 101.7 78 56.4
Ah.01g013830 Amaranthus hybridus HOM05D004982 ORTHO05D007569 5.1e-19 97.4 69 63.8
Zm00001eb402120 Zea mays HOM05D006200 ORTHO05D007569 5.7e-18 94.0 78 59.0
MD17G1249100 Malus domestica HOM05D006200 ORTHO05D007569 8.2e-17 90.1 50 80.0
Pp3c16_4930 Physcomitrium patens HOM05D006200 ORTHO05D007569 1.8e-16 89.0 70 58.6
Pp3c16_5110 Physcomitrium patens HOM05D006200 ORTHO05D007569 1.8e-16 89.0 70 58.6
Pp3c6_18900 Physcomitrium patens HOM05D006200 ORTHO05D007569 1.8e-16 89.0 65 60.0
Cre12.g543050 Chlamydomonas reinhardtii HOM05D006200 ORTHO05D007569 1.9e-13 79.0 75 46.7
Aqoxy5G00520 Aquilegia oxysepala HOM05D006200 ORTHO05D007569 4.2e-13 77.8 40 85.0
MSTRG.6639 Avicennia marina HOM05D006200 ORTHO05D007569 1.6e-12 75.9 42 83.3
CsaV3_7G002590 Cucumis sativus L. HOM05D006200 ORTHO05D007569 5.2e-11 70.9 42 81.0
Zm00001eb093000 Zea mays HOM05D006200 ORTHO05D007569 1.5e-10 69.3 78 47.4
RcHm_v2.0_Chr5g0026981 Rosa chinensis HOM05D006200 ORTHO05D007569 3.1e-08 61.6 37 67.6
Zm00001eb414470 Zea mays HOM05D006200 ORTHO05D007569 2.2e-06 55.5 36 66.7
TAR375G0899 Trochodendron aralioides HOM05D000612 ORTHO05D030704 3.8e-06 54.7 65 44.6


User provided reference genes

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