Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_021040 Daucus carota HOM05D004700 ORTHO05D005576 8.0e-108 394.0 240 100.0
DCAR_013348 Daucus carota HOM05D004700 ORTHO05D005576 2.5e-93 345.9 240 91.7
Lj1A824T63 Lonicera japonica HOM05D004700 ORTHO05D005576 6.2e-76 288.1 239 74.5
Actinidia03618 Actinidia chinensis HOM05D004700 ORTHO05D005576 4.0e-75 285.4 240 77.5
Haze_09248 Corylus avellana HOM05D004700 ORTHO05D005576 5.2e-75 285.0 240 77.1
CSS0040857 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 1.5e-74 283.5 238 79.8
CSS0048020 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 2.0e-74 283.1 239 79.1
CSS0037390 Camellia sinensis var. sinensis HOM05D004700 ORTHO05D005576 7.5e-74 281.2 239 78.7
vmacro11972 Vaccinium macrocarpon HOM05D004700 ORTHO05D005576 1.1e-72 277.3 240 75.8
Cfa019516 Carpinus fangiana HOM05D004700 ORTHO05D005576 2.4e-72 276.2 240 76.2
Manes.15G098600 Manihot esculenta HOM05D004700 ORTHO05D005576 1.6e-71 273.5 240 70.8
QL08p024163 Quercus lobata HOM05D004700 ORTHO05D005576 2.7e-71 272.7 239 73.2
Actinidia12604 Actinidia chinensis HOM05D004700 ORTHO05D005576 3.5e-71 272.3 254 68.5
Potri.011G104500 Populus trichocarpa HOM05D004700 ORTHO05D005576 4.6e-71 271.9 240 73.8
CiPaw.12G110800 Carya illinoinensis HOM05D004700 ORTHO05D005576 6.0e-71 271.6 239 78.2
Ciclev10016084m.g Citrus clementina HOM05D004700 ORTHO05D005576 1.3e-70 270.4 240 75.4
CAN.G68.2 Capsicum annuum HOM05D004700 ORTHO05D005576 2.3e-70 269.6 239 77.8
Hma1.2p1_0325F.1_g125830 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 3.0e-70 269.2 246 76.4
ECA236G3615 Erigeron canadensis HOM05D004700 ORTHO05D005576 3.9e-70 268.9 266 56.8
Sabra11G0076400 Salix brachista HOM05D004700 ORTHO05D005576 3.9e-70 268.9 241 74.3
Sabra11G0081100 Salix brachista HOM05D004700 ORTHO05D005576 3.9e-70 268.9 240 74.6
PGSC0003DMG400013718 Solanum tuberosum HOM05D004700 ORTHO05D005576 8.6e-70 267.7 239 77.8
COL.COLO4_17473 Corchorus olitorius HOM05D004700 ORTHO05D005576 1.9e-69 266.5 241 61.0
Solyc08g015770.4 Solanum lycopersicum HOM05D004700 ORTHO05D005576 2.5e-69 266.2 239 77.4
GSVIVG01014096001 Vitis vinifera HOM05D004700 ORTHO05D005576 2.5e-69 266.2 241 75.1
Atru.chr2.1968 Acer truncatum HOM05D004700 ORTHO05D005576 3.3e-69 265.8 240 76.2
HanXRQChr15g0492381 Helianthus annuus HOM05D004700 ORTHO05D005576 3.3e-69 265.8 240 75.0
Atru.chr2.1937 Acer truncatum HOM05D004700 ORTHO05D005576 9.5e-69 264.2 240 75.8
Prupe.4G156500 Prunus persica HOM05D004700 ORTHO05D005576 9.5e-69 264.2 240 71.7
TAR624G0400 Trochodendron aralioides HOM05D004700 ORTHO05D005576 4.7e-68 261.9 239 75.7
Cc05_g10710 Coffea canephora HOM05D004700 ORTHO05D005576 8.1e-68 261.2 240 73.8
Hma1.2p1_0050F.1_g028780 Hydrangea macrophylla HOM05D004700 ORTHO05D005576 1.4e-67 260.4 240 70.0
Nn6g34422 Nelumbo nucifera HOM05D004700 ORTHO05D005576 1.4e-67 260.4 239 71.1
Actinidia39420 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.8e-67 260.0 239 67.4
RhsimUnG0206700 Rhododendron simsii HOM05D004700 ORTHO05D005576 1.8e-67 260.0 240 70.0
TWI38G0400 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 3.1e-67 259.2 240 69.6
PGR031G0266 Punica granatum HOM05D004700 ORTHO05D005576 6.8e-67 258.1 239 75.7
Lsat_1_v5_gn_7_101801 Lactuca sativa HOM05D004700 ORTHO05D005576 1.2e-66 257.3 255 57.3
Cpa.g.sc77.62 Carica papaya HOM05D004700 ORTHO05D005576 1.5e-66 256.9 242 60.3
CiPaw.11G155900 Carya illinoinensis HOM05D004700 ORTHO05D005576 1.5e-66 256.9 239 73.6
Eucgr.F03234 Eucalyptus grandis HOM05D004700 ORTHO05D005576 2.0e-66 256.5 240 72.1
Oeu050672.1 Olea europaea HOM05D004700 ORTHO05D005576 2.0e-66 256.5 239 67.8
AUR62039578 Chenopodium quinoa HOM05D004700 ORTHO05D005576 2.6e-66 256.1 240 73.3
AUR62019650 Chenopodium quinoa HOM05D004700 ORTHO05D005576 7.6e-66 254.6 240 72.9
MELO3C016116.2 Cucumis melo HOM05D004700 ORTHO05D005576 2.9e-65 252.7 241 68.9
Migut.H02024 Erythranthe guttata HOM05D004700 ORTHO05D005576 2.9e-65 252.7 239 61.5
Peaxi162Scf00111g01325 Petunia axillaris HOM05D004700 ORTHO05D005576 3.8e-65 252.3 238 59.7
Lalb_Chr19g0133711 Lupinus albus HOM05D004700 ORTHO05D005576 4.9e-65 251.9 240 58.3
THA.LOC104822577 Tarenaya hassleriana HOM05D004700 ORTHO05D005576 8.4e-65 251.1 241 58.1
Potri.001G383900 Populus trichocarpa HOM05D004700 ORTHO05D005576 1.4e-64 250.4 246 73.2
Rhsim06G0211800 Rhododendron simsii HOM05D004700 ORTHO05D005576 1.4e-64 250.4 241 75.5
EL10Ac4g08417 Beta vulgaris HOM05D004700 ORTHO05D005576 4.1e-64 248.8 240 72.5
MBI06_g08516_MAGBIO Magnolia biondii HOM05D004700 ORTHO05D005576 5.4e-64 248.4 240 72.5
Phvul.011G168700 Phaseolus vulgaris HOM05D004700 ORTHO05D005576 7.1e-64 248.1 239 57.3
Sc03g0010710 Simmondsia chinensis HOM05D004700 ORTHO05D005576 7.1e-64 248.1 241 71.8
Nitab4.5_0012258g0020 Nicotiana tabacum HOM05D004700 ORTHO05D005576 1.6e-63 246.9 238 73.5
PSO675G6346 Papaver somniferum HOM05D004700 ORTHO05D005576 1.6e-63 246.9 241 72.6
Peaxi162Scf00000g00759 Petunia axillaris HOM05D004700 ORTHO05D005576 2.1e-63 246.5 240 73.3
Glyma.15G209600 Glycine max HOM05D004700 ORTHO05D005576 2.7e-63 246.1 239 64.9
Nitab4.5_0000348g0050 Nicotiana tabacum HOM05D004700 ORTHO05D005576 2.7e-63 246.1 240 73.3
CANSAT56G3173 Cannabis sativa HOM05D004700 ORTHO05D005576 3.5e-63 245.7 240 56.7
Manes.03G079300 Manihot esculenta HOM05D004700 ORTHO05D005576 6.0e-63 245.0 241 74.3
Thecc.07G132900 Theobroma cacao HOM05D004700 ORTHO05D005576 6.0e-63 245.0 241 73.0
Duzib213G0278 Durio zibethinus HOM05D004700 ORTHO05D005576 1.0e-62 244.2 241 74.7
Sabra16G0252900 Salix brachista HOM05D004700 ORTHO05D005576 2.3e-62 243.0 247 72.5
Sopen08g005940 Solanum pennellii HOM05D004700 ORTHO05D005576 3.0e-62 242.7 239 74.5
VMungo1127G0687 Vigna mungo HOM05D004700 ORTHO05D005576 3.9e-62 242.3 240 57.5
Nitab4.5_0000092g0360 Nicotiana tabacum HOM05D004700 ORTHO05D005576 6.6e-62 241.5 240 57.9
Sed0011117 Sechium edule HOM05D004700 ORTHO05D005576 6.6e-62 241.5 238 68.5
Glyma.09G099300 Glycine max HOM05D004700 ORTHO05D005576 8.6e-62 241.1 239 71.5
SGA_v2.0_scaffold181G39765 Striga asiatica HOM05D004700 ORTHO05D005576 8.6e-62 241.1 242 71.1
Gorai.007G331800 Gossypium raimondii HOM05D004700 ORTHO05D005576 1.5e-61 240.4 240 55.8
MSTRG.12860 Avicennia marina HOM05D004700 ORTHO05D005576 9.6e-61 237.7 240 55.8
PSO541G3766 Papaver somniferum HOM05D004700 ORTHO05D005576 1.6e-60 236.9 239 67.8
TPR.G16482 Trifolium pratense HOM05D004700 ORTHO05D005576 2.8e-60 236.1 239 54.8
ClCG07G010130 Citrullus lanatus HOM05D004700 ORTHO05D005576 4.7e-60 235.3 255 53.7
MD03G1247600 Malus domestica HOM05D004700 ORTHO05D005576 6.2e-60 235.0 241 67.6
Sp1g40020 Schrenkiella parvula HOM05D004700 ORTHO05D005576 8.1e-60 234.6 242 58.7
TWI38G0408 Tripterygium wilfordii HOM05D004700 ORTHO05D005576 1.1e-59 234.2 241 57.7
Hund08843 Selenicereus undatus HOM05D004700 ORTHO05D005576 1.4e-59 233.8 242 71.5
Thhalv10011691m.g Eutrema salsugineum HOM05D004700 ORTHO05D005576 6.9e-59 231.5 242 58.3
Ah.06g187700 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.2e-58 230.7 240 69.6
Medtr8g054400 Medicago truncatula HOM05D004700 ORTHO05D005576 1.5e-58 230.3 234 55.6
AL1G62040 Arabidopsis lyrata HOM05D004700 ORTHO05D005576 2.6e-58 229.6 241 57.3
Carub.0001s4267 Capsella rubella HOM05D004700 ORTHO05D005576 2.6e-58 229.6 242 57.9
ATR0602G050 Amborella trichopoda HOM05D004700 ORTHO05D005576 1.3e-57 227.3 246 66.3
CsaV3_4G008200 Cucumis sativus L. HOM05D004700 ORTHO05D005576 2.2e-57 226.5 240 66.2
Aa31LG10G1720 Aethionema arabicum HOM05D004700 ORTHO05D005576 2.9e-57 226.1 242 59.5
AT1G53490 Arabidopsis thaliana HOM05D004700 ORTHO05D005576 2.9e-57 226.1 241 57.3
Lj3g0009226 Lotus japonicus HOM05D004700 ORTHO05D005576 2.9e-57 226.1 240 57.9
BolC3t21472H Brassica oleracea HOM05D004700 ORTHO05D005576 1.1e-56 224.2 242 54.5
MD11G1269900 Malus domestica HOM05D004700 ORTHO05D005576 1.1e-56 224.2 238 63.0
BcaC01g01394 Brassica carinata HOM05D004700 ORTHO05D005576 2.4e-56 223.0 241 54.4
C03p91550 Brassica napus HOM05D004700 ORTHO05D005576 1.2e-55 220.7 243 54.7
CDE06G2539 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 1.6e-55 220.3 243 65.8
Gohir.D11G302900 Gossypium hirsutum HOM05D004700 ORTHO05D005576 3.5e-55 219.2 240 53.8
Dinv26707 Davidia involucrata HOM05D004700 ORTHO05D005576 1.7e-54 216.9 239 70.3
A05p18220 Brassica napus HOM05D004700 ORTHO05D005576 5.1e-54 215.3 243 52.3
Gohir.A11G289500 Gossypium hirsutum HOM05D004700 ORTHO05D005576 6.6e-54 214.9 240 52.9
Ah.04g164030 Amaranthus hybridus HOM05D004700 ORTHO05D005576 1.9e-53 213.4 240 65.8
BcaB02g10917 Brassica carinata HOM05D004700 ORTHO05D005576 3.3e-53 212.6 242 62.8
Os02g0232100 Oryza sativa ssp. japonica HOM05D004700 ORTHO05D005576 3.3e-53 212.6 240 55.8
BcaC08g43535 Brassica carinata HOM05D004700 ORTHO05D005576 1.6e-52 210.3 247 60.7
A06p00990 Brassica napus HOM05D004700 ORTHO05D005576 2.1e-52 209.9 249 57.8
BraA06t23327Z Brassica rapa HOM05D004700 ORTHO05D005576 2.1e-52 209.9 249 57.8
CARHR043720 Cardamine hirsuta HOM05D004700 ORTHO05D005576 4.8e-52 208.8 242 55.0
unitig_746.g26835 Utricularia gibba HOM05D004700 ORTHO05D005576 2.6e-50 203.0 239 51.5
BcaC08g44093 Brassica carinata HOM05D004700 ORTHO05D005576 3.4e-50 202.6 250 50.4
Zm00001eb239370 Zea mays HOM05D004700 ORTHO05D005576 7.6e-50 201.4 239 49.8
BcaB07g33326 Brassica carinata HOM05D004700 ORTHO05D005576 2.2e-49 199.9 243 49.4
arahy.Tifrunner.gnm1.ann1.DP9AR5 Arachis hypogaea HOM05D004700 ORTHO05D005576 4.9e-49 198.7 194 73.2
FAN11G3801 Fragaria x ananassa HOM05D004700 ORTHO05D005576 1.1e-48 197.6 253 62.5
C06p14980 Brassica napus HOM05D004700 ORTHO05D005576 1.9e-48 196.8 243 50.6
BolC6t36675H Brassica oleracea HOM05D004700 ORTHO05D005576 1.9e-48 196.8 243 50.6
arahy.Tifrunner.gnm1.ann1.7PP38G Arachis hypogaea HOM05D004700 ORTHO05D005576 3.2e-48 196.1 194 73.7
FAN16G2451 Fragaria x ananassa HOM05D004700 ORTHO05D005576 5.4e-48 195.3 253 61.3
Psat4g157000 Pisum sativum HOM05D004700 ORTHO05D005576 4.6e-47 192.2 241 52.7
BraA08t32208Z Brassica rapa HOM05D004700 ORTHO05D005576 3.9e-46 189.1 236 48.7
FAN25G1946 Fragaria x ananassa HOM05D004700 ORTHO05D005576 8.7e-46 188.0 253 62.5
Ca_22302_v3 Cicer arietinum L. HOM05D004700 ORTHO05D005576 1.1e-45 187.6 240 48.8
C06p09250 Brassica napus HOM05D004700 ORTHO05D005576 2.5e-45 186.4 236 58.9
BolC6t36002H Brassica oleracea HOM05D004700 ORTHO05D005576 2.5e-45 186.4 236 58.9
FvH4_3g17740 Fragaria vesca HOM05D004700 ORTHO05D005576 7.4e-45 184.9 240 65.0
BraA08t32205Z Brassica rapa HOM05D004700 ORTHO05D005576 2.8e-44 183.0 235 48.5
RcHm_v2.0_Chr5g0029521 Rosa chinensis HOM05D004700 ORTHO05D005576 8.1e-44 181.4 240 64.6
Oeu010032.1 Olea europaea HOM05D004700 ORTHO05D005576 4.5e-42 175.6 231 46.8
Aqoxy1G01902 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 1.5e-37 160.6 139 80.6
Sabra11G0075300 Salix brachista HOM05D004700 ORTHO05D005576 4.3e-37 159.1 163 56.4
BcaB04g17077 Brassica carinata HOM05D004700 ORTHO05D005576 1.4e-35 154.1 213 45.5
Sabra11G0075500 Salix brachista HOM05D004700 ORTHO05D005576 5.3e-35 152.1 140 79.3
Sed0005766 Sechium edule HOM05D004700 ORTHO05D005576 2.6e-34 149.8 142 77.5
CDE02G3773 Ceratophyllum demersum HOM05D004700 ORTHO05D005576 1.7e-33 147.1 149 56.4
SEGI_00597 Sequoiadendron giganteum HOM05D004700 ORTHO05D005576 2.9e-33 146.4 248 41.9
Sc07g0002390 Simmondsia chinensis HOM05D004700 ORTHO05D005576 6.3e-28 128.6 121 75.2
Gorai.002G047100 Gossypium raimondii HOM05D004700 ORTHO05D005576 8.2e-28 128.3 166 61.4
Sabra11G0075900 Salix brachista HOM05D004700 ORTHO05D005576 9.0e-27 124.8 126 81.7
Gohir.D01G038350 Gossypium hirsutum HOM05D004700 ORTHO05D005576 2.6e-26 123.2 158 64.6
Dinv13363 Davidia involucrata HOM05D004700 ORTHO05D005576 3.4e-26 122.9 115 92.2
Actinidia04620 Actinidia chinensis HOM05D004700 ORTHO05D005576 1.4e-24 117.5 127 52.8
Sabra11G0076300 Salix brachista HOM05D004700 ORTHO05D005576 1.1e-21 107.8 149 45.6
Aqoxy1G01901 Aquilegia oxysepala HOM05D004700 ORTHO05D005576 2.2e-20 103.6 114 57.9
BraA05t20718Z Brassica rapa HOM05D004700 ORTHO05D005576 5.9e-18 95.5 54 83.3
Zm00001eb364990 Zea mays HOM05D001185 ORTHO05D005576 1.8e-14 84.0 94 48.9
Mapoly0001s0250 Marchantia polymorpha HOM05D004700 ORTHO05D005576 5.1e-14 82.4 258 44.6
Sc07g0002380 Simmondsia chinensis HOM05D004700 ORTHO05D005576 2.2e-12 77.0 111 44.1
Lsat_1_v5_gn_6_80301 Lactuca sativa HOM05D003665 ORTHO05D004387 5.9e-10 68.9 46 71.7
Lsat_1_v5_gn_8_31621 Lactuca sativa HOM05D003665 ORTHO05D004387 5.9e-10 68.9 46 71.7
Nitab4.5_0000244g0440 Nicotiana tabacum HOM05D000856 ORTHO05D001792 3.8e-09 66.2 76 53.9
AagrBONN_evm.TU.Sc2ySwM_362.885 Anthoceros agrestis HOM05D004700 ORTHO05D005576 7.2e-08 62.0 160 55.6


User provided reference genes

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