Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 0.0e+00 1107.0 605 100.0
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 7.1e-121 438.7 510 51.6
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 2.4e-116 423.7 482 51.7
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 2.6e-115 420.2 498 49.8
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 3.4e-115 419.9 483 49.7
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 7.6e-115 418.7 554 47.7
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 1.0e-114 418.3 481 49.7
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 1.0e-114 418.3 483 50.7
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 1.3e-114 417.9 558 45.7
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 2.2e-114 417.2 481 49.9
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 2.9e-114 416.8 482 50.2
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 6.5e-114 415.6 545 47.0
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 6.5e-114 415.6 503 48.5
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 8.4e-114 415.2 558 47.1
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 8.4e-114 415.2 534 46.6
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 8.4e-114 415.2 544 46.9
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 1.1e-113 414.8 546 46.2
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 1.1e-113 414.8 554 47.1
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 1.9e-113 414.1 556 46.8
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 1.9e-113 414.1 566 44.3
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 3.2e-113 413.3 559 46.2
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.2e-113 413.3 548 46.0
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 3.2e-113 413.3 552 45.8
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 4.2e-113 412.9 481 48.4
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 5.5e-113 412.5 564 45.9
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 5.5e-113 412.5 558 46.4
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 5.5e-113 412.5 555 45.8
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 7.1e-113 412.1 549 46.1
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 9.3e-113 411.8 482 51.0
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 1.6e-112 411.0 558 45.2
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 1.6e-112 411.0 557 46.7
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 2.1e-112 410.6 564 46.3
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 2.1e-112 410.6 481 49.5
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 2.7e-112 410.2 537 45.1
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.5e-112 409.8 504 47.0
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.5e-112 409.8 500 47.6
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 3.5e-112 409.8 481 49.9
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 4.6e-112 409.5 564 46.1
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 4.6e-112 409.5 559 46.3
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 7.9e-112 408.7 509 50.3
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 7.9e-112 408.7 565 45.8
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 1.0e-111 408.3 543 45.7
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 1.0e-111 408.3 563 44.6
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 1.0e-111 408.3 481 49.9
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.3e-111 407.9 500 47.4
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 1.3e-111 407.9 485 49.3
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 1.3e-111 407.9 485 49.3
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 1.8e-111 407.5 481 47.8
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 1.8e-111 407.5 481 47.8
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 1.8e-111 407.5 561 45.3
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 1.8e-111 407.5 558 46.6
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 5.1e-111 406.0 548 45.3
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 8.7e-111 405.2 481 47.6
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 1.5e-110 404.4 479 47.8
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 1.5e-110 404.4 485 50.1
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 1.9e-110 404.1 482 49.2
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 3.3e-110 403.3 474 50.4
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 4.3e-110 402.9 540 45.4
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 7.4e-110 402.1 558 44.6
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 9.7e-110 401.7 507 46.0
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 9.7e-110 401.7 550 46.5
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 1.3e-109 401.4 569 44.6
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 1.3e-109 401.4 481 48.6
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.6e-109 401.0 483 48.2
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 2.2e-109 400.6 574 44.1
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 2.8e-109 400.2 555 44.9
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.8e-109 400.2 511 46.4
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 6.3e-109 399.1 539 45.5
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 6.3e-109 399.1 485 52.0
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 1.4e-108 397.9 506 47.4
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 1.4e-108 397.9 468 48.9
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 2.4e-108 397.1 565 43.9
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 3.1e-108 396.7 471 50.5
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 5.3e-108 396.0 555 44.7
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 6.9e-108 395.6 456 51.8
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 6.9e-108 395.6 552 45.3
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 1.2e-107 394.8 556 45.9
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 1.5e-107 394.4 500 47.0
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 2.0e-107 394.0 497 45.9
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 3.4e-107 393.3 573 45.2
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 3.4e-107 393.3 573 45.2
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 1.7e-106 391.0 490 47.6
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 2.9e-106 390.2 485 48.0
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 2.7e-104 383.6 605 41.5
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 3.6e-104 383.3 481 46.6
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 8.7e-103 378.6 560 42.7
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 1.9e-102 377.5 507 43.8
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 8.2e-101 372.1 500 47.0
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 1.1e-100 371.7 488 45.3
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 1.8e-100 370.9 535 43.0
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 6.9e-100 369.0 486 49.0
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 1.0e-98 365.2 553 43.4
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 1.3e-98 364.8 553 41.6
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 2.5e-97 360.5 544 44.1
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 7.2e-97 359.0 554 43.0
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 6.1e-96 355.9 587 39.7
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.4e-95 354.8 448 47.8
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 3.9e-95 353.2 427 48.0
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 4.4e-94 349.7 571 39.4
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 7.4e-94 349.0 482 44.0
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 1.4e-89 334.7 438 46.3
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 3.2e-89 333.6 426 46.0
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 6.1e-88 329.3 482 44.4
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 3.0e-87 327.0 397 48.1
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 8.8e-87 325.5 516 40.7
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 1.7e-85 321.2 556 38.3
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 7.0e-84 315.8 455 43.5
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 1.2e-83 315.1 444 45.0
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 7.7e-83 312.4 422 45.7
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 2.9e-82 310.5 484 39.5
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 7.2e-81 305.8 492 42.3
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 6.1e-80 302.8 400 46.8
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 5.2e-79 299.7 474 39.9
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 1.3e-74 285.0 507 36.5
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 7.2e-73 279.3 490 39.4
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 1.5e-62 245.0 293 46.4
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 1.7e-58 231.5 481 32.8
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 2.9e-53 214.2 272 44.9
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 3.5e-51 207.2 480 34.2
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 1.3e-50 205.3 421 36.3
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 5.6e-49 199.9 206 51.5
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 1.8e-47 194.9 534 29.2
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 1.2e-46 192.2 279 43.0
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.6e-43 180.3 239 44.8
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 5.0e-42 176.8 239 43.9
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 3.7e-37 160.6 247 40.5
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 4.6e-35 153.7 166 54.8
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 8.6e-34 149.4 354 31.9
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 4.3e-33 147.1 247 39.7
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.1e-32 144.8 234 40.6
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 4.7e-32 143.7 241 39.4
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 1.4e-31 142.1 149 48.3
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 4.9e-29 133.7 130 55.4
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 4.1e-28 130.6 186 44.1
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 3.5e-27 127.5 121 56.2
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 7.8e-27 126.3 116 59.5
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 7.8e-27 126.3 113 60.2
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.9e-26 124.0 112 60.7
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 5.1e-26 123.6 113 58.4
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 8.7e-26 122.9 113 59.3
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 1.5e-25 122.1 88 63.6
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 2.2e-21 108.2 220 34.5
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 1.2e-19 102.4 100 52.0
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 1.6e-19 102.1 222 33.3
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 2.1e-19 101.7 222 33.3
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 1.7e-18 98.6 88 58.0
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 3.0e-18 97.8 79 58.2
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.1e-17 95.9 193 34.7
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.5e-14 85.5 87 50.6
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 4.5e-14 84.0 77 58.4
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 2.2e-13 81.6 136 42.6
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 3.8e-13 80.9 135 32.6
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 4.9e-13 80.5 93 49.5
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 1.9e-12 78.6 59 61.0
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 4.2e-12 77.4 104 42.3
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 5.4e-12 77.0 66 60.6
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 8.7e-10 69.7 100 40.0
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 5.6e-09 67.0 61 59.0
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 1.6e-08 65.5 61 59.0
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 4.0e-07 60.8 110 41.8


User provided reference genes

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