Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 0.0e+00 1712.6 869 100.0
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 1.2e-294 1016.5 863 60.8
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 1.8e-290 1002.7 859 60.5
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.7e-288 996.1 864 60.0
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 1.2e-283 979.9 863 58.3
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 3.0e-282 975.3 900 57.2
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 5.2e-282 974.5 749 65.3
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 2.8e-280 968.8 866 58.5
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 3.8e-277 958.4 869 57.5
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 2.5e-276 955.7 862 57.4
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 3.4e-273 945.3 866 56.7
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 2.4e-271 939.1 864 57.3
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 2.7e-270 935.6 863 57.5
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 2.3e-269 932.6 863 57.9
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 1.9e-268 929.5 866 56.7
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 2.5e-268 929.1 863 56.7
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 5.8e-265 917.9 869 56.4
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 7.5e-265 917.5 807 58.2
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 9.8e-265 917.1 862 55.7
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 1.1e-263 913.7 862 55.6
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 7.0e-263 911.0 866 56.5
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 1.0e-261 907.1 864 55.6
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.7e-261 906.4 862 55.8
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 3.0e-261 905.6 860 56.6
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 8.6e-261 904.0 862 55.3
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 2.5e-260 902.5 862 55.7
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 2.1e-259 899.4 863 56.3
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 3.6e-259 898.7 854 54.3
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 3.6e-259 898.7 862 55.6
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 4.7e-259 898.3 863 55.2
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 4.7e-259 898.3 861 56.3
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.8e-257 891.3 863 54.9
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 7.5e-257 891.0 861 55.9
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 2.5e-252 875.9 862 54.1
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 9.5e-252 874.0 888 53.9
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.2e-250 868.2 863 54.1
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 8.9e-250 867.5 863 54.1
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 8.3e-248 860.9 867 52.4
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.4e-247 860.1 867 54.8
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 7.8e-246 854.4 752 59.0
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 3.9e-245 852.0 868 52.8
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 2.1e-243 846.3 925 50.7
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 5.4e-239 831.6 816 53.7
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 4.6e-238 828.6 863 51.3
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 1.7e-237 826.6 865 51.6
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 2.3e-237 826.2 870 51.7
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 1.9e-236 823.2 870 51.4
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 5.6e-236 821.6 870 51.5
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.1e-235 819.7 880 51.7
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 4.0e-234 815.5 947 49.7
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 6.9e-234 814.7 897 50.8
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 2.0e-233 813.1 861 52.6
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 5.8e-233 811.6 869 50.3
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 1.4e-231 807.0 890 49.3
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 9.3e-231 804.3 953 47.2
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 9.3e-231 804.3 864 50.5
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 2.1e-230 803.1 875 51.1
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 6.6e-229 798.1 648 63.9
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 1.9e-228 796.6 864 49.4
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 3.3e-228 795.8 869 51.0
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 1.8e-226 790.0 872 49.0
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 5.8e-225 785.0 871 48.7
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 8.4e-224 781.2 866 50.6
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 4.2e-223 778.9 864 50.2
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 8.1e-219 764.6 923 46.6
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 2.0e-217 760.0 865 47.9
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 1.5e-212 743.8 885 46.8
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 2.1e-211 740.0 866 46.5
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.1e-210 737.6 867 46.0
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 4.0e-210 735.7 814 49.9
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 6.9e-210 734.9 884 47.9
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 1.2e-209 734.2 869 46.5
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 1.2e-209 734.2 864 48.5
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 1.0e-208 731.1 870 46.7
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 1.2e-206 724.2 868 46.3
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 1.2e-206 724.2 910 44.6
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 7.9e-206 721.5 878 46.1
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 5.1e-205 718.8 885 45.6
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 9.7e-204 714.5 875 44.6
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 8.2e-203 711.4 868 45.2
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 3.1e-202 709.5 720 53.2
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 5.3e-202 708.8 703 52.6
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 6.9e-202 708.4 868 44.9
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 1.2e-201 707.6 868 44.9
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 1.2e-201 707.6 868 44.9
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 4.5e-201 705.7 867 46.1
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 1.7e-200 703.7 871 44.5
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 4.2e-199 699.1 868 46.4
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 1.2e-198 697.6 717 52.4
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 3.4e-193 679.5 864 45.7
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 5.5e-191 672.2 815 45.5
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 4.7e-190 669.1 709 50.1
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 3.3e-188 662.9 878 44.1
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 2.4e-186 656.8 874 44.1
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 4.1e-186 656.0 877 44.8
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.5e-185 654.1 865 44.2
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 2.9e-184 649.8 716 50.3
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 4.0e-181 639.4 669 50.1
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.1e-178 631.3 606 54.0
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.8e-176 622.9 678 52.5
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 6.1e-174 615.5 876 42.8
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 1.2e-169 601.3 867 42.7
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 3.8e-168 596.3 708 47.9
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 7.7e-161 572.0 863 40.1
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 8.0e-158 562.0 709 44.3
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 1.8e-157 560.8 622 49.0
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 4.7e-142 509.6 559 48.7
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 8.9e-141 505.4 763 39.4
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 3.9e-136 490.0 893 38.2
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 1.9e-130 471.1 877 34.9
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 1.2e-126 458.4 731 39.0
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 1.1e-122 445.3 697 38.2
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 3.1e-117 427.2 783 37.7
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 2.1e-113 414.5 580 41.7
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 6.2e-110 402.9 534 41.8
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.8e-101 374.8 262 72.5
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 6.0e-97 359.8 246 75.2
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 2.8e-94 350.9 228 78.1
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 3.0e-88 330.9 960 28.2
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.8e-86 324.3 963 28.9
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 2.8e-86 324.3 963 28.9
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 5.3e-85 320.1 799 30.8
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 5.3e-85 320.1 720 30.6
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 1.3e-83 315.5 437 43.7
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 2.2e-83 314.7 228 68.9
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 1.8e-77 295.0 192 79.7
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 2.0e-71 275.0 193 72.5
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 2.0e-71 275.0 505 34.7
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 1.2e-68 265.8 193 69.9
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 2.6e-68 264.6 187 67.4
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 8.0e-65 253.1 189 63.0
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 8.2e-62 243.0 353 38.2
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 5.0e-59 233.8 213 54.0
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 4.2e-58 230.7 760 28.2
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.7e-54 218.8 260 48.1
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 5.4e-53 213.8 224 51.3
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 7.7e-52 209.9 143 78.3
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 1.7e-51 208.8 220 52.3
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 1.7e-51 208.8 211 50.2
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 6.5e-51 206.8 332 37.3
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 2.2e-46 191.8 196 49.0
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 5.0e-43 180.6 143 66.4
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 1.3e-38 166.0 194 46.4
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 3.7e-38 164.5 223 40.4
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 3.9e-35 154.5 108 70.4
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 1.9e-34 152.1 231 37.2
Nitab4.5_0000020g0040 Nicotiana tabacum HOM05D004248 ORTHO05D004978 1.6e-33 149.1 214 40.2
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 2.8e-33 148.3 222 39.2
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 4.6e-28 131.0 84 81.0
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 3.0e-27 128.3 104 68.3
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 8.9e-24 116.7 192 37.0
Psat3g179800 Pisum sativum HOM05D004248 ORTHO05D004978 1.5e-23 115.9 106 58.5
Psat3g179840 Pisum sativum HOM05D004248 ORTHO05D004978 2.6e-23 115.2 103 58.3
SEGI_14989 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 2.9e-22 111.7 369 24.1
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 1.1e-21 109.8 203 33.0
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 7.1e-21 107.1 100 56.0
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 2.1e-20 105.5 188 31.9
C05p33550 Brassica napus HOM05D004248 ORTHO05D004978 1.7e-19 102.4 177 36.7
Potri.011G096201 Populus trichocarpa HOM05D004248 ORTHO05D004978 6.6e-19 100.5 114 48.2
BraA05t20915Z Brassica rapa HOM05D000848 ORTHO05D000007 1.4e-13 82.8 114 36.8
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 6.9e-08 63.9 50 66.0
Phvul.004G028700 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 9.9e-07 60.1 68 50.0


User provided reference genes

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