Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 7.4e-71 270.4 134 100.0
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 4.1e-53 211.5 123 79.7
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 7.0e-53 210.7 122 80.3
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 1.6e-52 209.5 123 78.0
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 2.0e-52 209.1 124 78.2
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 2.0e-52 209.1 133 75.2
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 2.7e-52 208.8 130 76.2
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 7.7e-52 207.2 123 78.9
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.9e-51 205.3 125 76.8
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 6.5e-51 204.1 125 76.0
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 8.5e-51 203.8 123 78.0
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 1.1e-50 203.4 124 75.8
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 2.5e-50 202.2 123 78.0
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 4.2e-50 201.4 123 76.4
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 1.6e-49 199.5 130 75.4
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 1.6e-49 199.5 126 76.2
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 4.7e-49 198.0 125 73.6
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 4.7e-49 198.0 130 73.1
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 6.1e-49 197.6 126 75.4
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 1.0e-48 196.8 127 75.6
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 1.4e-48 196.4 127 70.9
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 1.8e-48 196.1 131 72.5
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 8.8e-48 193.7 126 74.6
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 1.2e-47 193.4 120 79.2
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 1.2e-47 193.4 130 72.3
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 1.5e-47 193.0 123 74.8
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 2.0e-47 192.6 130 70.0
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 2.6e-47 192.2 123 73.2
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 2.6e-47 192.2 127 73.2
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 3.4e-47 191.8 130 70.8
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 3.4e-47 191.8 126 74.6
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 3.4e-47 191.8 120 75.8
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 4.4e-47 191.4 126 73.8
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 4.4e-47 191.4 122 77.0
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 5.7e-47 191.0 136 73.5
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.7e-47 191.0 126 72.2
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 5.7e-47 191.0 127 70.1
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 7.5e-47 190.7 127 74.0
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 9.8e-47 190.3 127 72.4
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 9.8e-47 190.3 122 72.1
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.3e-46 189.9 126 72.2
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 1.3e-46 189.9 126 72.2
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 1.3e-46 189.9 126 73.8
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.7e-46 189.5 125 73.6
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 2.2e-46 189.1 123 73.2
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.2e-46 189.1 126 71.4
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 2.8e-46 188.7 119 76.5
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 2.8e-46 188.7 122 77.0
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.8e-46 188.7 122 77.0
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 2.8e-46 188.7 122 77.0
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 3.7e-46 188.3 123 74.8
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.7e-46 188.3 130 70.0
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 4.9e-46 188.0 122 75.4
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 6.3e-46 187.6 130 69.2
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 6.3e-46 187.6 121 73.6
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 1.1e-45 186.8 118 74.6
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 1.4e-45 186.4 126 73.0
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.8e-45 186.0 123 76.4
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 2.4e-45 185.7 121 72.7
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 3.1e-45 185.3 129 72.1
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 3.1e-45 185.3 120 71.7
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 7.0e-45 184.1 122 75.4
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 1.2e-44 183.3 122 73.8
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 2.0e-44 182.6 125 69.6
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 2.7e-44 182.2 119 74.8
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 2.7e-44 182.2 123 69.1
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 4.5e-44 181.4 122 69.7
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 1.0e-43 180.3 147 59.2
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 1.3e-43 179.9 121 69.4
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 2.3e-43 179.1 123 70.7
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 2.9e-43 178.7 122 71.3
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 3.8e-43 178.3 122 70.5
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 3.8e-43 178.3 120 70.8
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 6.6e-43 177.6 123 69.9
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.1e-42 176.8 119 67.2
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 1.1e-42 176.8 120 70.0
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 4.2e-42 174.9 118 70.3
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 5.6e-42 174.5 120 70.8
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 7.2e-42 174.1 128 66.4
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 1.6e-41 172.9 121 63.6
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 4.7e-41 171.4 121 67.8
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.0e-40 170.2 100 80.0
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 1.0e-40 170.2 119 66.4
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 1.4e-40 169.9 112 71.4
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 1.8e-40 169.5 120 68.3
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 1.8e-40 169.5 119 65.5
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 2.3e-40 169.1 99 80.8
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 2.3e-40 169.1 120 67.5
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 5.2e-40 167.9 117 70.9
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 5.2e-40 167.9 120 65.8
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 6.8e-40 167.5 120 66.7
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 1.2e-39 166.8 120 66.7
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 1.3e-38 163.3 128 65.6
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.2e-38 162.5 108 73.1
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 2.9e-38 162.2 120 62.5
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 2.9e-38 162.2 122 63.1
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 3.7e-38 161.8 119 63.9
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 6.4e-38 161.0 120 65.0
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 6.4e-38 161.0 122 66.4
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 6.4e-38 161.0 120 62.5
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 8.3e-38 160.6 126 59.5
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 8.3e-38 160.6 122 64.8
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 1.1e-37 160.2 123 62.6
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.1e-37 160.2 125 60.0
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 1.8e-37 159.5 120 63.3
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 1.8e-37 159.5 112 69.6
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 1.8e-37 159.5 120 63.3
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 1.8e-37 159.5 123 61.8
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 5.4e-37 157.9 122 61.5
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 9.2e-37 157.1 109 68.8
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 9.2e-37 157.1 118 62.7
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 9.2e-37 157.1 134 56.0
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 1.2e-36 156.8 120 64.2
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 1.2e-36 156.8 120 63.3
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 2.0e-36 156.0 120 62.5
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 2.7e-36 155.6 120 65.0
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 3.5e-36 155.2 105 65.7
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 7.8e-36 154.1 127 59.1
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 1.0e-35 153.7 120 60.0
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 1.0e-35 153.7 123 58.5
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.3e-35 152.5 123 61.0
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 2.9e-35 152.1 123 61.0
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 1.1e-34 150.2 120 61.7
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 1.1e-34 150.2 124 58.1
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.5e-34 149.8 127 56.7
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 1.5e-34 149.8 118 63.6
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 1.5e-34 149.8 118 63.6
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 1.5e-34 149.8 118 63.6
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.9e-34 149.4 123 60.2
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 1.9e-34 149.4 120 61.7
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.9e-34 149.4 120 60.8
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 2.5e-34 149.1 121 61.2
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 2.5e-34 149.1 120 60.8
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 3.3e-34 148.7 123 59.3
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 5.6e-34 147.9 123 60.2
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 5.6e-34 147.9 120 60.8
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.2e-33 146.7 123 58.5
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 2.1e-33 146.0 118 60.2
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 2.1e-33 146.0 118 60.2
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 2.1e-33 146.0 107 67.3
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 2.1e-33 146.0 123 56.1
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 3.6e-33 145.2 118 60.2
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 3.6e-33 145.2 120 60.0
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 3.6e-33 145.2 119 58.8
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 4.7e-33 144.8 125 60.8
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 8.0e-33 144.1 118 60.2
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 1.0e-32 143.7 121 58.7
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 2.3e-32 142.5 118 59.3
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 2.3e-32 142.5 118 59.3
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 4.0e-32 141.7 118 59.3
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 6.8e-32 141.0 119 54.6
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 2.6e-31 139.0 121 62.0
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 4.4e-31 138.3 124 56.5
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 1.7e-30 136.3 123 50.4
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 3.2e-29 132.1 119 53.8
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.0e-27 127.1 119 52.1
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 4.3e-26 121.7 120 50.8
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 1.3e-22 110.2 60 83.3
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 4.9e-22 108.2 59 84.7
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 3.2e-21 105.5 79 64.6
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 1.7e-19 99.8 112 42.9
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 9.5e-18 94.0 53 73.6
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.2e-17 93.6 65 70.8
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 4.7e-17 91.7 81 64.2
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 2.6e-15 85.9 62 58.1
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 5.8e-15 84.7 65 64.6
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 1.3e-14 83.6 62 66.1
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.3e-14 83.6 53 73.6
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 1.7e-14 83.2 63 63.5
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 2.2e-14 82.8 64 65.6
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 2.2e-14 82.8 119 37.8
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.9e-14 82.4 61 62.3
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.9e-14 82.4 61 62.3
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 8.6e-11 70.9 59 61.0
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 1.9e-10 69.7 70 54.3
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 1.6e-09 66.6 51 66.7
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 2.0e-07 59.7 64 48.4


User provided reference genes

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