Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
DCAR_020672 Daucus carota HOM05D003229 ORTHO05D003835 2.9e-154 548.5 274 100.0
AUR62020197 Chenopodium quinoa HOM05D003229 ORTHO05D003835 2.4e-15 87.0 198 30.3
AUR62001585 Chenopodium quinoa HOM05D003229 ORTHO05D003835 4.1e-15 86.3 196 31.1
Lsat_1_v5_gn_0_39260 Lactuca sativa HOM05D003229 ORTHO05D003835 1.1e-12 78.2 178 30.3
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 7.2e-12 75.5 105 35.2
CiPaw.13G105300 Carya illinoinensis HOM05D003229 ORTHO05D003835 1.6e-11 74.3 212 27.8
PSO339G4047 Papaver somniferum HOM05D003229 ORTHO05D003835 1.6e-11 74.3 216 27.3
PSO384G4356 Papaver somniferum HOM05D003229 ORTHO05D003835 1.6e-11 74.3 218 27.1
COL.COLO4_29455 Corchorus olitorius HOM05D003229 ORTHO05D003835 1.0e-10 71.6 142 33.8
TWI74G0877 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 1.4e-10 71.2 235 28.1
Haze_23616 Corylus avellana HOM05D003229 ORTHO05D003835 1.8e-10 70.9 217 27.6
GSVIVG01037516001 Vitis vinifera HOM05D003229 ORTHO05D003835 1.8e-10 70.9 233 26.2
Cfa010230 Carpinus fangiana HOM05D003229 ORTHO05D003835 5.1e-10 69.3 201 25.9
Ciclev10011928m.g Citrus clementina HOM05D003229 ORTHO05D003835 5.1e-10 69.3 92 40.2
Atru.chr3.3041 Acer truncatum HOM05D003229 ORTHO05D003835 8.8e-10 68.6 182 28.6
arahy.Tifrunner.gnm1.ann1.B3GIUW Arachis hypogaea HOM05D003229 ORTHO05D003835 1.5e-09 67.8 253 23.7
HanXRQChr03g0089231 Helianthus annuus HOM05D003229 ORTHO05D003835 1.5e-09 67.8 198 27.3
CSS0045009 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 2.0e-09 67.4 148 28.4
AT3G43590 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 3.3e-09 66.6 265 27.9
Duzib177G0022 Durio zibethinus HOM05D003229 ORTHO05D003835 3.3e-09 66.6 155 28.4
PGSC0003DMG400002995 Solanum tuberosum HOM05D003229 ORTHO05D003835 3.3e-09 66.6 136 32.4
Thhalv10020505m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 4.4e-09 66.2 236 26.7
Solyc06g073810.4 Solanum lycopersicum HOM05D003229 ORTHO05D003835 4.4e-09 66.2 259 24.7
MELO3C017380.2 Cucumis melo HOM05D003229 ORTHO05D003835 5.7e-09 65.9 142 32.4
Sc21g0006640 Simmondsia chinensis HOM05D003229 ORTHO05D003835 5.7e-09 65.9 145 26.9
Gohir.A04G056400 Gossypium hirsutum HOM05D003229 ORTHO05D003835 7.4e-09 65.5 143 32.2
Phvul.006G006900 Phaseolus vulgaris HOM05D003229 ORTHO05D003835 7.4e-09 65.5 189 30.2
TWI79G1121 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 7.4e-09 65.5 120 36.7
Duzib128G1455 Durio zibethinus HOM05D003229 ORTHO05D003835 9.7e-09 65.1 153 29.4
Atru.chr8.1245 Acer truncatum HOM05D003229 ORTHO05D003835 2.2e-08 63.9 92 35.9
MSTRG.26568 Avicennia marina HOM05D003229 ORTHO05D003835 2.2e-08 63.9 150 28.0
QL01p018824 Quercus lobata HOM05D003229 ORTHO05D003835 2.2e-08 63.9 120 40.0
TWI31G0893 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 2.8e-08 63.5 197 29.4
GSVIVG01022494001 Vitis vinifera HOM05D003229 ORTHO05D003835 2.8e-08 63.5 126 32.5
Migut.N02427 Erythranthe guttata HOM05D003229 ORTHO05D003835 3.7e-08 63.2 119 37.0
SGA_v2.0_scaffold16G07545 Striga asiatica HOM05D003229 ORTHO05D003835 4.8e-08 62.8 117 36.8
Ciclev10028298m.g Citrus clementina HOM05D003229 ORTHO05D003835 6.3e-08 62.4 196 26.5
Cc01_g08150 Coffea canephora HOM05D003229 ORTHO05D003835 6.3e-08 62.4 154 33.8
Peaxi162Scf01091g00018 Petunia axillaris HOM05D003229 ORTHO05D003835 6.3e-08 62.4 138 34.1
AL5G21520 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 1.1e-07 61.6 194 30.4
Eucgr.J00598 Eucalyptus grandis HOM05D003229 ORTHO05D003835 1.1e-07 61.6 171 26.9
VMungo0540G0117 Vigna mungo HOM05D003229 ORTHO05D003835 1.1e-07 61.6 98 39.8
MSTRG.12405 Avicennia marina HOM05D003229 ORTHO05D003835 1.4e-07 61.2 102 34.3
PGSC0003DMG400005910 Solanum tuberosum HOM05D003229 ORTHO05D003835 1.4e-07 61.2 188 29.3
SGA_v2.0_scaffold82G26251 Striga asiatica HOM05D003229 ORTHO05D003835 1.4e-07 61.2 138 36.2
Cpa.g.sc103.35 Carica papaya HOM05D003229 ORTHO05D003835 1.8e-07 60.8 154 33.1
HanXRQChr05g0137001 Helianthus annuus HOM05D003229 ORTHO05D003835 2.4e-07 60.5 127 34.6
Sed0028007 Sechium edule HOM05D003229 ORTHO05D003835 2.4e-07 60.5 148 27.0
Nitab4.5_0010116g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 3.1e-07 60.1 89 34.8
Sp5g17570 Schrenkiella parvula HOM05D003229 ORTHO05D003835 3.1e-07 60.1 204 29.9
Solyc11g071690.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 4.1e-07 59.7 92 38.0
Sopen11g029360 Solanum pennellii HOM05D003229 ORTHO05D003835 4.1e-07 59.7 92 38.0
Zm00001eb114310 Zea mays HOM05D003229 ORTHO05D003835 4.1e-07 59.7 56 44.6
ClCG06G014150 Citrullus lanatus HOM05D003229 ORTHO05D003835 5.3e-07 59.3 130 33.1
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 5.3e-07 59.3 92 39.1
Lj6g0007817 Lotus japonicus HOM05D003229 ORTHO05D003835 5.3e-07 59.3 185 26.5
TAR636G2352 Trochodendron aralioides HOM05D003229 ORTHO05D003835 5.3e-07 59.3 145 29.0
Zm00001eb200300 Zea mays HOM05D003229 ORTHO05D003835 5.3e-07 59.3 56 42.9
Dinv32144 Davidia involucrata HOM05D003229 ORTHO05D003835 6.9e-07 58.9 139 36.0
Peaxi162Scf00355g00005 Petunia axillaris HOM05D003229 ORTHO05D003835 6.9e-07 58.9 193 32.1
CARHR287360 Cardamine hirsuta HOM05D003229 ORTHO05D003835 9.1e-07 58.5 230 25.7
Glyma.20G055200 Glycine max HOM05D003229 ORTHO05D003835 9.1e-07 58.5 56 44.6
LjContig00564g0024504 Lotus japonicus HOM05D003229 ORTHO05D003835 9.1e-07 58.5 148 28.4
Thecc.05G181700 Theobroma cacao HOM05D003229 ORTHO05D003835 1.2e-06 58.2 120 31.7
DCAR_012260 Daucus carota HOM05D003229 ORTHO05D003835 1.5e-06 57.8 149 24.8
Glyma.13G028000 Glycine max HOM05D003229 ORTHO05D003835 1.5e-06 57.8 185 30.8
Hma1.2p1_0218F.1_g092270 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 1.5e-06 57.8 178 28.7
Lj2C839T18 Lonicera japonica HOM05D003229 ORTHO05D003835 1.5e-06 57.8 94 40.4
Manes.04G063962 Manihot esculenta HOM05D003229 ORTHO05D003835 1.5e-06 57.8 131 32.8
Nn2g14458 Nelumbo nucifera HOM05D003229 ORTHO05D003835 1.5e-06 57.8 92 38.0
Sopen06g030210 Solanum pennellii HOM05D003229 ORTHO05D003835 1.5e-06 57.8 165 29.1
SGA_v2.0_scaffold392G50668 Striga asiatica HOM05D003229 ORTHO05D003835 1.5e-06 57.8 158 31.6
CSS0010675 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 2.0e-06 57.4 91 33.0
THA.LOC104799740 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 2.0e-06 57.4 246 24.4
THA.LOC104810972 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 2.0e-06 57.4 210 24.3
BraA06t25329Z Brassica rapa HOM05D003229 ORTHO05D003835 2.6e-06 57.0 141 34.0
Thhalv10019590m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 2.6e-06 57.0 237 28.7
Rhsim13G0199400 Rhododendron simsii HOM05D003229 ORTHO05D003835 2.6e-06 57.0 56 42.9
Carub.0005s0918 Capsella rubella HOM05D003229 ORTHO05D003835 3.4e-06 56.6 186 29.6
Hund20968 Selenicereus undatus HOM05D003229 ORTHO05D003835 3.4e-06 56.6 99 37.4
MD03G1161300 Malus domestica HOM05D003229 ORTHO05D003835 4.5e-06 56.2 194 22.7
Carub.0005s0931 Capsella rubella HOM05D003229 ORTHO05D003835 5.9e-06 55.8 186 30.1
FvH4_2g05241 Fragaria vesca HOM05D003229 ORTHO05D003835 5.9e-06 55.8 92 33.7
FAN27G0679 Fragaria x ananassa HOM05D003229 ORTHO05D003835 5.9e-06 55.8 151 27.8
Oeu048813.5 Olea europaea HOM05D003229 ORTHO05D003835 5.9e-06 55.8 138 32.6
A06p22470 Brassica napus HOM05D003229 ORTHO05D003835 7.7e-06 55.5 141 33.3
A06p22530 Brassica napus HOM05D003229 ORTHO05D003835 7.7e-06 55.5 141 33.3
Oeu058180.2 Olea europaea HOM05D003229 ORTHO05D003835 7.7e-06 55.5 57 43.9
RcHm_v2.0_Chr6g0255381 Rosa chinensis HOM05D003229 ORTHO05D003835 7.7e-06 55.5 94 35.1


User provided reference genes

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